Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL00332:Chil3'

6790

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Chil3

Ensembl Gene

ENSMUSG00000040809

Gene Name

chitinase-like 3

Synonyms

Ym1, Chi3l3

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.501) question?

Stock #

IGL00332

Quality Score

Status

Chromosome

Chromosomal Location

106054870-106074852 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 106056017 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Isoleucine at position 352 (N352I)

Ref Sequence

ENSEMBL: ENSMUSP00000053923 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000063062]

AlphaFold

O35744

PDB Structure

THE CRYSTAL STRUCTURE OF NOVEL MAMMALIAN LECTIN YM1 SUGGESTS A SACCHARIDE BINDING SITE [X-RAY DIFFRACTION]
The Crystal Structure of Ym1 at 1.31 A Resolution [X-RAY DIFFRACTION]

Predicted Effect

probably damaging
Transcript: ENSMUST00000063062
AA Change: N352I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000053923
Gene: ENSMUSG00000040809
AA Change: N352I

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Glyco_18	22	365	5.17e-134	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000149836
AA Change: N23I

SMART Domains

Protein: ENSMUSP00000121823
Gene: ENSMUSG00000040809
AA Change: N23I

Domain	Start	End	E-Value	Type
Blast:Glyco_18	2	37	1e-10	BLAST
SCOP:d1goia2	2	44	2e-6	SMART
PDB:1VF8\|A	2	58	3e-28	PDB

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: The protein encoded by this gene is similar to bacterial chitinases but lacks chitinase activity. The encoded protein is thought to function as a lectin and may be involved in inflammation and allergy. [provided by RefSeq, Sep 2015]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acp6	T	C	3: 97,083,737 (GRCm39)	Y404H	possibly damaging	Het
Adgrv1	T	A	13: 81,620,996 (GRCm39)		probably benign	Het
Akap13	A	G	7: 75,378,667 (GRCm39)	K2107E	probably damaging	Het
Ankrd42	A	G	7: 92,233,662 (GRCm39)		probably benign	Het
Apba3	C	T	10: 81,108,901 (GRCm39)	P555S	probably damaging	Het
Aplnr	A	G	2: 84,967,985 (GRCm39)	S337G	probably benign	Het
Arhgef40	A	G	14: 52,226,417 (GRCm39)	N154D	probably damaging	Het
Asb14	A	G	14: 26,633,998 (GRCm39)	K401R	probably benign	Het
Aspn	C	A	13: 49,719,968 (GRCm39)	T328K	probably benign	Het
Barhl2	C	T	5: 106,603,365 (GRCm39)	A265T	possibly damaging	Het
Brca2	T	A	5: 150,463,363 (GRCm39)	H1042Q	probably benign	Het
C3	A	G	17: 57,533,004 (GRCm39)	L167P	probably benign	Het
Ccdc33	A	G	9: 57,977,257 (GRCm39)		probably benign	Het
Cdk10	T	A	8: 123,957,063 (GRCm39)	M222K	possibly damaging	Het
Cfap45	C	T	1: 172,362,912 (GRCm39)		probably benign	Het
Chn2	G	T	6: 54,272,907 (GRCm39)		probably null	Het
Cimip2b	G	A	4: 43,428,158 (GRCm39)	R100W	possibly damaging	Het
Cpt1b	T	C	15: 89,305,066 (GRCm39)	E394G	probably benign	Het
Fcgr2b	T	A	1: 170,788,799 (GRCm39)	N273I	possibly damaging	Het
Fpr-rs7	G	A	17: 20,333,480 (GRCm39)	Q337*	probably null	Het
Fras1	T	A	5: 96,887,217 (GRCm39)	N2666K	possibly damaging	Het
Gfra3	C	T	18: 34,824,601 (GRCm39)		probably null	Het
Gm4553	T	C	7: 141,718,964 (GRCm39)	S155G	unknown	Het
Gpr75	C	T	11: 30,841,590 (GRCm39)	T165I	probably damaging	Het
Gzmd	A	T	14: 56,367,737 (GRCm39)	C179S	probably damaging	Het
Hand1	T	G	11: 57,722,575 (GRCm39)	H13P	probably damaging	Het
Irak3	C	T	10: 120,013,972 (GRCm39)		probably null	Het
Isl2	T	A	9: 55,452,253 (GRCm39)	L275Q	possibly damaging	Het
Itgb2	T	C	10: 77,393,240 (GRCm39)	V367A	probably damaging	Het
Katna1	T	C	10: 7,638,758 (GRCm39)		probably benign	Het
Myh6	A	G	14: 55,184,450 (GRCm39)	M1627T	probably benign	Het
Naprt	A	G	15: 75,765,164 (GRCm39)	Y187H	probably damaging	Het
Nedd4	T	A	9: 72,642,371 (GRCm39)	V550E	probably damaging	Het
Nt5c2	A	G	19: 46,884,954 (GRCm39)	V252A	possibly damaging	Het
Or8k39	T	C	2: 86,563,579 (GRCm39)	I126V	possibly damaging	Het
Or9i16	C	T	19: 13,864,945 (GRCm39)	V210I	probably benign	Het
P2ry2	A	G	7: 100,647,393 (GRCm39)	V304A	probably damaging	Het
Pde4dip	T	C	3: 97,674,593 (GRCm39)	N108D	probably benign	Het
Pdgfrl	A	G	8: 41,438,660 (GRCm39)	T199A	probably damaging	Het
Plaa	A	G	4: 94,470,844 (GRCm39)	Y431H	probably benign	Het
Pls1	A	T	9: 95,664,472 (GRCm39)	I177N	possibly damaging	Het
Plxna2	T	C	1: 194,472,138 (GRCm39)	F1035L	probably damaging	Het
Ppp6r3	A	T	19: 3,564,729 (GRCm39)		probably null	Het
Prpf4b	T	C	13: 35,067,890 (GRCm39)	S240P	probably benign	Het
Reg2	T	A	6: 78,383,204 (GRCm39)	Y50*	probably null	Het
Rev3l	C	T	10: 39,682,965 (GRCm39)	T361I	probably benign	Het
Rps4l	A	G	6: 148,256,383 (GRCm39)		probably benign	Het
Scn11a	A	T	9: 119,598,982 (GRCm39)	F1183I	probably damaging	Het
Sh2b2	T	C	5: 136,253,273 (GRCm39)	E327G	probably damaging	Het
Shank2	A	G	7: 143,965,584 (GRCm39)	K1057R	probably damaging	Het
Sim2	T	A	16: 93,915,803 (GRCm39)	Y255*	probably null	Het
Snx9	A	G	17: 5,949,636 (GRCm39)	N112S	probably benign	Het
Sphkap	T	A	1: 83,258,237 (GRCm39)	I169F	probably damaging	Het
Spink5	A	G	18: 44,100,111 (GRCm39)	T43A	probably benign	Het
Stac2	C	T	11: 97,932,005 (GRCm39)	S265N	probably benign	Het
Tbx20	A	G	9: 24,670,044 (GRCm39)	V91A	probably damaging	Het
Tgfbr2	C	T	9: 115,939,257 (GRCm39)	R190H	probably damaging	Het
Ubr2	A	G	17: 47,301,916 (GRCm39)		probably null	Het
Wdfy3	C	T	5: 102,063,204 (GRCm39)		probably null	Het
Wdr82	T	C	9: 106,061,449 (GRCm39)	V166A	probably benign	Het
Zfhx4	C	T	3: 5,307,401 (GRCm39)	A209V	probably damaging	Het
Zfp518b	T	A	5: 38,831,109 (GRCm39)	T299S	possibly damaging	Het

Other mutations in Chil3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01552:Chil3	APN	3	106,056,164 (GRCm39)	missense	probably damaging	0.98
IGL02538:Chil3	APN	3	106,071,445 (GRCm39)	missense	probably damaging	1.00
PIT4382001:Chil3	UTSW	3	106,055,975 (GRCm39)	missense	probably damaging	1.00
R0145:Chil3	UTSW	3	106,067,794 (GRCm39)	missense	probably damaging	1.00
R0269:Chil3	UTSW	3	106,063,072 (GRCm39)	missense	probably benign	0.00
R0310:Chil3	UTSW	3	106,067,839 (GRCm39)	missense	possibly damaging	0.75
R0453:Chil3	UTSW	3	106,056,221 (GRCm39)	missense	probably benign	0.26
R0541:Chil3	UTSW	3	106,068,548 (GRCm39)	critical splice acceptor site	probably null
R0617:Chil3	UTSW	3	106,063,072 (GRCm39)	missense	probably benign	0.00
R0831:Chil3	UTSW	3	106,057,063 (GRCm39)	missense	probably benign	0.19
R1699:Chil3	UTSW	3	106,067,682 (GRCm39)	critical splice donor site	probably null
R1851:Chil3	UTSW	3	106,056,117 (GRCm39)	critical splice donor site	probably null
R1852:Chil3	UTSW	3	106,056,117 (GRCm39)	critical splice donor site	probably null
R2105:Chil3	UTSW	3	106,067,794 (GRCm39)	missense	possibly damaging	0.73
R2202:Chil3	UTSW	3	106,071,562 (GRCm39)	missense	probably benign	0.11
R2204:Chil3	UTSW	3	106,071,562 (GRCm39)	missense	probably benign	0.11
R2205:Chil3	UTSW	3	106,071,562 (GRCm39)	missense	probably benign	0.11
R4358:Chil3	UTSW	3	106,067,815 (GRCm39)	nonsense	probably null
R4492:Chil3	UTSW	3	106,063,017 (GRCm39)	missense	probably damaging	1.00
R4543:Chil3	UTSW	3	106,067,686 (GRCm39)	missense	probably benign
R4554:Chil3	UTSW	3	106,067,686 (GRCm39)	missense	probably benign
R4930:Chil3	UTSW	3	106,071,524 (GRCm39)	missense	possibly damaging	0.67
R5011:Chil3	UTSW	3	106,057,477 (GRCm39)	missense	possibly damaging	0.46
R5083:Chil3	UTSW	3	106,071,405 (GRCm39)	critical splice donor site	probably null
R5231:Chil3	UTSW	3	106,063,045 (GRCm39)	missense	probably damaging	0.96
R5423:Chil3	UTSW	3	106,055,978 (GRCm39)	missense	probably damaging	1.00
R6804:Chil3	UTSW	3	106,071,495 (GRCm39)	nonsense	probably null
R6859:Chil3	UTSW	3	106,067,730 (GRCm39)	missense	probably benign	0.14
R7218:Chil3	UTSW	3	106,067,853 (GRCm39)	splice site	probably null
R7391:Chil3	UTSW	3	106,071,496 (GRCm39)	missense	probably damaging	1.00
R7426:Chil3	UTSW	3	106,063,022 (GRCm39)	missense	probably benign	0.05
R7582:Chil3	UTSW	3	106,071,572 (GRCm39)	missense	probably damaging	1.00
R7620:Chil3	UTSW	3	106,067,751 (GRCm39)	missense	probably damaging	1.00
R7647:Chil3	UTSW	3	106,056,122 (GRCm39)	missense	possibly damaging	0.73
R7749:Chil3	UTSW	3	106,056,161 (GRCm39)	missense	probably benign	0.22
R7944:Chil3	UTSW	3	106,057,464 (GRCm39)	nonsense	probably null
R8099:Chil3	UTSW	3	106,055,984 (GRCm39)	missense	probably damaging	1.00
R8181:Chil3	UTSW	3	106,057,203 (GRCm39)	missense	probably damaging	0.98
R8859:Chil3	UTSW	3	106,071,440 (GRCm39)	missense	possibly damaging	0.86
R9011:Chil3	UTSW	3	106,057,031 (GRCm39)	nonsense	probably null
R9193:Chil3	UTSW	3	106,063,081 (GRCm39)	missense	possibly damaging	0.90
R9352:Chil3	UTSW	3	106,067,787 (GRCm39)	missense	probably damaging	1.00
R9607:Chil3	UTSW	3	106,067,685 (GRCm39)	missense	probably null	0.01

Posted On

2012-04-20