Mutagenetix > Incidental Mutation

Incidental Mutation 'R8927:Tarm1'

679598

Institutional Source

Beutler Lab

Gene Symbol

Tarm1

Ensembl Gene

ENSMUSG00000053338

Gene Name

T cell-interacting, activating receptor on myeloid cells 1

Synonyms

Gm9904, 9930022N03Rik

MMRRC Submission

068771-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.071) question?

Stock #

R8927 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

3535016-3551140 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 3537719 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 248 (T248I)

Ref Sequence

ENSEMBL: ENSMUSP00000145188 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065703] [ENSMUST00000203020] [ENSMUST00000203821]

AlphaFold

B6A8R8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000065703
AA Change: T236I

PolyPhen 2 Score 0.866 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000069745
Gene: ENSMUSG00000053338
AA Change: T236I

Domain	Start	End	E-Value	Type
signal peptide	1	16	N/A	INTRINSIC
IG_like	34	120	9.45e0	SMART
IG	131	217	5.28e-3	SMART
transmembrane domain	256	278	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000203020
AA Change: T248I

PolyPhen 2 Score 0.943 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000145188
Gene: ENSMUSG00000053338
AA Change: T248I

Domain	Start	End	E-Value	Type
signal peptide	1	16	N/A	INTRINSIC
IG_like	40	104	4.6e-3	SMART
IG_like	92	198	4.1e-2	SMART
IG	131	217	2.2e-5	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000203821
AA Change: T248I

PolyPhen 2 Score 0.793 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000145491
Gene: ENSMUSG00000053338
AA Change: T248I

Domain	Start	End	E-Value	Type
signal peptide	1	16	N/A	INTRINSIC
IG_like	34	120	9.45e0	SMART
IG	131	217	5.28e-3	SMART
transmembrane domain	256	278	N/A	INTRINSIC

Meta Mutation Damage Score

0.1712

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700017B05Rik	G	A	9: 57,165,805 (GRCm39)	R190*	probably null	Het
Aldh7a1	A	T	18: 56,660,060 (GRCm39)	S529T	probably benign	Het
Carmil2	T	G	8: 106,415,130 (GRCm39)	Y214*	probably null	Het
Ccdc136	A	G	6: 29,406,109 (GRCm39)	I152V	probably damaging	Het
Ccdc88c	T	C	12: 100,932,676 (GRCm39)	D285G	possibly damaging	Het
Clec4a3	T	A	6: 122,946,328 (GRCm39)	F191I	probably damaging	Het
Dennd6b	AGCTGGGGTCCCGC	AGC	15: 89,069,780 (GRCm39)		probably null	Het
Dlg5	A	T	14: 24,206,547 (GRCm39)	S1222T		Het
Dnaaf9	T	A	2: 130,579,300 (GRCm39)	R777*	probably null	Het
Dnah14	T	G	1: 181,508,321 (GRCm39)	L1833W	probably damaging	Het
Dsg2	T	C	18: 20,725,535 (GRCm39)	W549R	probably damaging	Het
Ezh2	A	T	6: 47,510,713 (GRCm39)	V632E	possibly damaging	Het
Fam83a	G	A	15: 57,873,313 (GRCm39)	V381M	probably benign	Het
Fmo2	T	C	1: 162,704,398 (GRCm39)	T503A	probably benign	Het
Foxo1	T	C	3: 52,252,703 (GRCm39)	F289L	probably damaging	Het
Gckr	A	G	5: 31,456,903 (GRCm39)	E96G	probably damaging	Het
Gm18596	G	A	10: 77,578,162 (GRCm39)	A104V	unknown	Het
Gm21680	A	T	5: 26,176,347 (GRCm39)	N83K	probably damaging	Het
Gnb5	T	C	9: 75,252,236 (GRCm39)	V393A	possibly damaging	Het
Grin2b	T	G	6: 135,749,339 (GRCm39)	Q621P	probably damaging	Het
Gtsf2	T	C	15: 103,352,783 (GRCm39)	I79V	probably benign	Het
Itga1	T	C	13: 115,105,055 (GRCm39)	I1040V	probably benign	Het
Kif2b	C	T	11: 91,468,023 (GRCm39)	E87K	probably benign	Het
Klk1b8	G	A	7: 43,604,206 (GRCm39)	G225S	probably damaging	Het
L3mbtl3	A	T	10: 26,220,084 (GRCm39)	C94S	unknown	Het
Man2c1	T	G	9: 57,048,456 (GRCm39)	Y872*	probably null	Het
Mical3	T	A	6: 120,984,325 (GRCm39)	M832L	probably benign	Het
Mrc2	A	G	11: 105,216,334 (GRCm39)	D41G	probably benign	Het
Nedd1	T	A	10: 92,558,258 (GRCm39)		probably benign	Het
Nicn1	C	T	9: 108,171,708 (GRCm39)	R163C	possibly damaging	Het
Notch3	C	T	17: 32,372,792 (GRCm39)	R593Q	probably benign	Het
Nxpe3	T	G	16: 55,669,997 (GRCm39)	E369D	possibly damaging	Het
Obscn	T	A	11: 58,977,695 (GRCm39)	T1802S	possibly damaging	Het
Or1e33	A	T	11: 73,738,406 (GRCm39)	F182I	probably benign	Het
Or2a7	T	C	6: 43,151,669 (GRCm39)	F250L	probably benign	Het
Or4k51	A	T	2: 111,585,107 (GRCm39)	H171L	probably benign	Het
Or9s14	A	G	1: 92,536,438 (GRCm39)	N293S	probably damaging	Het
Oscar	A	C	7: 3,614,747 (GRCm39)	V75G	probably benign	Het
Pcdhb17	G	A	18: 37,620,372 (GRCm39)	A721T	probably benign	Het
Pcnx2	T	C	8: 126,614,659 (GRCm39)	Y264C	probably benign	Het
Pear1	G	T	3: 87,661,890 (GRCm39)	A495D	probably damaging	Het
Plekhf1	C	A	7: 37,920,998 (GRCm39)	R190L	probably damaging	Het
Plppr5	T	C	3: 117,369,532 (GRCm39)	V63A	probably benign	Het
Pyroxd1	T	A	6: 142,300,437 (GRCm39)	F189Y	probably damaging	Het
Rab13	C	T	3: 90,128,120 (GRCm39)		probably benign	Het
Rptor	C	T	11: 119,782,036 (GRCm39)	T1121I	probably benign	Het
Scgb2b7	T	C	7: 31,404,602 (GRCm39)	S33G	probably benign	Het
Slc25a36	A	G	9: 96,982,126 (GRCm39)		probably null	Het
Smtn	T	A	11: 3,479,477 (GRCm39)	H530L	possibly damaging	Het
Srrt	C	T	5: 137,297,070 (GRCm39)	C411Y	probably benign	Het
Stag1	C	A	9: 100,587,298 (GRCm39)	P7Q	possibly damaging	Het
Tektl1	T	C	10: 78,588,258 (GRCm39)	Y184C	probably damaging	Het
Trim6	C	T	7: 103,881,655 (GRCm39)	A328V	probably benign	Het
Vmn1r189	T	C	13: 22,286,811 (GRCm39)	I9V	probably benign	Het
Vmn2r93	A	G	17: 18,546,500 (GRCm39)	T791A	probably damaging	Het
Vsig10l	A	G	7: 43,116,020 (GRCm39)	T454A	probably benign	Het

Other mutations in Tarm1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03229:Tarm1	APN	7	3,545,413 (GRCm39)	missense	probably damaging	1.00
R0096:Tarm1	UTSW	7	3,546,067 (GRCm39)	missense	probably benign	0.23
R0282:Tarm1	UTSW	7	3,546,006 (GRCm39)	missense	probably damaging	1.00
R0308:Tarm1	UTSW	7	3,545,187 (GRCm39)	splice site	probably benign
R3768:Tarm1	UTSW	7	3,546,097 (GRCm39)	missense	probably benign	0.10
R4732:Tarm1	UTSW	7	3,545,416 (GRCm39)	nonsense	probably null
R4733:Tarm1	UTSW	7	3,545,416 (GRCm39)	nonsense	probably null
R4982:Tarm1	UTSW	7	3,537,612 (GRCm39)	missense	probably damaging	1.00
R5336:Tarm1	UTSW	7	3,546,084 (GRCm39)	missense	probably damaging	0.99
R6128:Tarm1	UTSW	7	3,537,720 (GRCm39)	missense	probably benign	0.04
R6746:Tarm1	UTSW	7	3,550,978 (GRCm39)	missense	probably benign	0.10
R6892:Tarm1	UTSW	7	3,546,006 (GRCm39)	missense	probably damaging	1.00
R7003:Tarm1	UTSW	7	3,545,939 (GRCm39)	critical splice donor site	probably null
R7414:Tarm1	UTSW	7	3,545,318 (GRCm39)	missense	probably benign	0.05
R8439:Tarm1	UTSW	7	3,546,037 (GRCm39)	missense	possibly damaging	0.69
R8925:Tarm1	UTSW	7	3,537,719 (GRCm39)	missense	possibly damaging	0.94
R9608:Tarm1	UTSW	7	3,551,062 (GRCm39)	start gained	probably benign
R9687:Tarm1	UTSW	7	3,544,457 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CCCTGTAAGTAACAAGGCTAAATTGG -3'
(R):5'- GCTGCTGCAGAGTTGAACAC -3'

Sequencing Primer
(F):5'- ATGGTGGCTCACAACCATCTG -3'
(R):5'- CTGCTGCAGAGTTGAACACAAAGG -3'

Posted On

2021-08-02