Incidental Mutation 'R8940:Ndst4'
| ID |
680898 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ndst4
|
| Ensembl Gene |
ENSMUSG00000027971 |
| Gene Name |
N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 |
| Synonyms |
4930439H17Rik |
| MMRRC Submission |
068780-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.072)
|
| Stock # |
R8940 (G1)
|
| Quality Score |
102.008 |
|
Status
|
Validated
|
| Chromosome |
3 |
| Chromosomal Location |
125197725-125522548 bp(+) (GRCm39) |
| Type of Mutation |
start gained |
| DNA Base Change (assembly) |
A to G
at 125474802 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000133575
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000173932]
[ENSMUST00000174648]
|
| AlphaFold |
Q9EQW8 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000173932
|
| SMART Domains |
Protein: ENSMUSP00000133341
Gene: ENSMUSG00000027971
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:HSNSD
|
20 |
505 |
1.2e-251 |
PFAM |
|
Pfam:Sulfotransfer_1
|
594 |
857 |
1.2e-43 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174648
|
| SMART Domains |
Protein: ENSMUSP00000133575
Gene: ENSMUSG00000027971
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Sulfotransfer_1
|
86 |
349 |
6.6e-44 |
PFAM |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.7%
- 20x: 99.1%
|
| Validation Efficiency |
99% (73/74) |
| MGI Phenotype |
PHENOTYPE: Mice homozygous for a knock-out allele exhibit a phenotype restricted to the colonic epithelium that includes an increased number of colon goblet cells, a decreased number of colonocytes, and increased apoptosis of colonic epithelial cells in the proximal colon. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 77 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2900026A02Rik |
A |
T |
5: 113,241,068 (GRCm39) |
S1709T |
probably benign |
Het |
| Abcc12 |
A |
G |
8: 87,287,440 (GRCm39) |
V135A |
probably benign |
Het |
| Alkbh3 |
G |
T |
2: 93,838,391 (GRCm39) |
P60H |
probably damaging |
Het |
| Armc3 |
A |
C |
2: 19,240,393 (GRCm39) |
Y50S |
probably damaging |
Het |
| Arpc4 |
T |
C |
6: 113,362,599 (GRCm39) |
V70A |
probably benign |
Het |
| Atp13a4 |
A |
G |
16: 29,273,508 (GRCm39) |
|
probably null |
Het |
| Bco1 |
A |
T |
8: 117,857,347 (GRCm39) |
Y438F |
probably benign |
Het |
| Cacna1b |
C |
A |
2: 24,653,084 (GRCm39) |
|
probably benign |
Het |
| Cdh17 |
C |
T |
4: 11,783,226 (GRCm39) |
S189L |
probably damaging |
Het |
| Cltc |
T |
C |
11: 86,621,072 (GRCm39) |
T312A |
probably benign |
Het |
| Crym |
T |
A |
7: 119,794,703 (GRCm39) |
N172I |
probably benign |
Het |
| Depdc7 |
A |
G |
2: 104,554,913 (GRCm39) |
|
probably null |
Het |
| Dnhd1 |
T |
A |
7: 105,363,854 (GRCm39) |
|
probably benign |
Het |
| Dntt |
T |
A |
19: 41,046,990 (GRCm39) |
|
probably benign |
Het |
| Elovl5 |
T |
A |
9: 77,890,007 (GRCm39) |
S273T |
possibly damaging |
Het |
| Fat2 |
A |
T |
11: 55,147,636 (GRCm39) |
L3869M |
possibly damaging |
Het |
| Garnl3 |
T |
C |
2: 32,895,241 (GRCm39) |
|
probably null |
Het |
| Gldc |
C |
T |
19: 30,128,884 (GRCm39) |
M196I |
probably benign |
Het |
| Gm17078 |
C |
T |
14: 51,846,342 (GRCm39) |
V120M |
probably damaging |
Het |
| Gm5157 |
G |
A |
7: 20,918,685 (GRCm39) |
S286F |
probably damaging |
Het |
| Gm6337 |
C |
T |
14: 6,055,308 (GRCm38) |
C187Y |
probably damaging |
Het |
| Golgb1 |
A |
G |
16: 36,736,759 (GRCm39) |
D2002G |
probably damaging |
Het |
| Gpr179 |
T |
C |
11: 97,228,675 (GRCm39) |
N1160S |
probably damaging |
Het |
| Gulo |
A |
G |
14: 66,235,040 (GRCm39) |
V227A |
probably benign |
Het |
| Hlcs |
G |
A |
16: 94,032,085 (GRCm39) |
A31V |
probably benign |
Het |
| Hs1bp3 |
T |
C |
12: 8,391,980 (GRCm39) |
S361P |
probably benign |
Het |
| Ifi44 |
G |
A |
3: 151,454,946 (GRCm39) |
P93L |
probably benign |
Het |
| Izumo2 |
T |
A |
7: 44,362,470 (GRCm39) |
M78K |
probably benign |
Het |
| Lin54 |
T |
C |
5: 100,594,530 (GRCm39) |
E545G |
probably damaging |
Het |
| Map3k13 |
A |
T |
16: 21,727,454 (GRCm39) |
I439F |
possibly damaging |
Het |
| Matr3 |
T |
G |
18: 35,705,640 (GRCm39) |
S188R |
probably damaging |
Het |
| Mug1 |
A |
T |
6: 121,858,642 (GRCm39) |
H1120L |
|
Het |
| Myef2l |
A |
T |
3: 10,153,406 (GRCm39) |
L58F |
probably benign |
Het |
| Nlrp3 |
G |
A |
11: 59,455,870 (GRCm39) |
V889M |
probably benign |
Het |
| Or1x6 |
A |
G |
11: 50,939,455 (GRCm39) |
I174V |
probably benign |
Het |
| Or2r2 |
A |
G |
6: 42,463,212 (GRCm39) |
M305T |
probably benign |
Het |
| Or5g29 |
A |
G |
2: 85,421,528 (GRCm39) |
I215V |
probably benign |
Het |
| Or5m5 |
A |
T |
2: 85,814,543 (GRCm39) |
M120L |
probably benign |
Het |
| Or8d4 |
T |
A |
9: 40,038,480 (GRCm39) |
Y259F |
probably damaging |
Het |
| P4hb |
A |
T |
11: 120,458,828 (GRCm39) |
D182E |
probably benign |
Het |
| Pcdh10 |
A |
G |
3: 45,338,620 (GRCm39) |
T926A |
possibly damaging |
Het |
| Pikfyve |
T |
C |
1: 65,286,129 (GRCm39) |
S1078P |
probably benign |
Het |
| Plcl2 |
A |
T |
17: 50,915,790 (GRCm39) |
D933V |
probably damaging |
Het |
| Pramel7 |
G |
A |
2: 87,321,612 (GRCm39) |
T141I |
probably benign |
Het |
| Prepl |
A |
T |
17: 85,376,354 (GRCm39) |
C567S |
probably damaging |
Het |
| Prpsap1 |
A |
T |
11: 116,370,615 (GRCm39) |
M114K |
probably damaging |
Het |
| Ptk2b |
A |
C |
14: 66,407,685 (GRCm39) |
|
probably null |
Het |
| Rest |
T |
C |
5: 77,430,715 (GRCm39) |
F1045L |
possibly damaging |
Het |
| Rnf19a |
A |
G |
15: 36,260,284 (GRCm39) |
C254R |
probably damaging |
Het |
| Rrad |
C |
T |
8: 105,355,222 (GRCm39) |
R262Q |
possibly damaging |
Het |
| Rsf1 |
GGCG |
GGCGACTGCCGCG |
7: 97,229,113 (GRCm39) |
|
probably benign |
Het |
| Setdb1 |
T |
A |
3: 95,263,483 (GRCm39) |
M8L |
probably benign |
Het |
| Setdb2 |
A |
G |
14: 59,646,956 (GRCm39) |
S536P |
probably damaging |
Het |
| Sipa1l1 |
T |
C |
12: 82,404,040 (GRCm39) |
L511P |
probably damaging |
Het |
| Slc12a9 |
T |
A |
5: 137,326,755 (GRCm39) |
H234L |
probably benign |
Het |
| Slc35e2 |
G |
T |
4: 155,694,542 (GRCm39) |
G30W |
probably damaging |
Het |
| Slc6a15 |
T |
C |
10: 103,229,357 (GRCm39) |
V132A |
probably damaging |
Het |
| Slc7a10 |
A |
G |
7: 34,899,875 (GRCm39) |
T486A |
probably benign |
Het |
| Smc5 |
T |
C |
19: 23,237,126 (GRCm39) |
Y235C |
probably benign |
Het |
| Sorcs3 |
T |
C |
19: 48,784,908 (GRCm39) |
|
probably null |
Het |
| Spata21 |
T |
C |
4: 140,832,216 (GRCm39) |
L459P |
probably damaging |
Het |
| Tbc1d9 |
A |
G |
8: 83,981,452 (GRCm39) |
I706M |
probably damaging |
Het |
| Tcp11 |
T |
A |
17: 28,299,204 (GRCm39) |
E17V |
probably damaging |
Het |
| Tiparp |
A |
G |
3: 65,439,299 (GRCm39) |
D23G |
probably benign |
Het |
| Tmem108 |
A |
G |
9: 103,377,156 (GRCm39) |
S98P |
possibly damaging |
Het |
| Tmem35b |
A |
G |
4: 127,021,673 (GRCm39) |
D56G |
probably damaging |
Het |
| Tnr |
G |
C |
1: 159,685,867 (GRCm39) |
G366A |
probably damaging |
Het |
| Ttc3 |
A |
G |
16: 94,230,358 (GRCm39) |
S852G |
possibly damaging |
Het |
| Ttn |
G |
A |
2: 76,596,938 (GRCm39) |
L19992F |
probably damaging |
Het |
| Ush2a |
T |
A |
1: 188,132,505 (GRCm39) |
M909K |
probably benign |
Het |
| Wdr90 |
G |
A |
17: 26,076,146 (GRCm39) |
R104C |
|
Het |
| Wif1 |
A |
G |
10: 120,935,684 (GRCm39) |
H333R |
probably benign |
Het |
| Zfp119a |
A |
G |
17: 56,172,551 (GRCm39) |
C431R |
probably damaging |
Het |
| Zfp345 |
G |
A |
2: 150,314,277 (GRCm39) |
P420L |
probably benign |
Het |
| Zfp608 |
C |
T |
18: 55,033,301 (GRCm39) |
D411N |
possibly damaging |
Het |
| Zfp609 |
C |
T |
9: 65,610,561 (GRCm39) |
A801T |
possibly damaging |
Het |
| Zfp74 |
A |
G |
7: 29,634,772 (GRCm39) |
V312A |
possibly damaging |
Het |
|
| Other mutations in Ndst4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00920:Ndst4
|
APN |
3 |
125,231,860 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL00926:Ndst4
|
APN |
3 |
125,355,102 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01292:Ndst4
|
APN |
3 |
125,232,403 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01797:Ndst4
|
APN |
3 |
125,476,802 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0004:Ndst4
|
UTSW |
3 |
125,364,475 (GRCm39) |
missense |
probably benign |
0.03 |
|
R0118:Ndst4
|
UTSW |
3 |
125,405,210 (GRCm39) |
nonsense |
probably null |
|
|
R0652:Ndst4
|
UTSW |
3 |
125,405,188 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R1437:Ndst4
|
UTSW |
3 |
125,355,099 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R1502:Ndst4
|
UTSW |
3 |
125,231,407 (GRCm39) |
start gained |
probably benign |
|
|
R1900:Ndst4
|
UTSW |
3 |
125,491,544 (GRCm39) |
splice site |
probably null |
|
|
R1960:Ndst4
|
UTSW |
3 |
125,232,331 (GRCm39) |
nonsense |
probably null |
|
|
R2249:Ndst4
|
UTSW |
3 |
125,231,823 (GRCm39) |
missense |
probably benign |
0.16 |
|
R2334:Ndst4
|
UTSW |
3 |
125,501,825 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R2345:Ndst4
|
UTSW |
3 |
125,501,769 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R3617:Ndst4
|
UTSW |
3 |
125,231,782 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3713:Ndst4
|
UTSW |
3 |
125,355,154 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R3715:Ndst4
|
UTSW |
3 |
125,355,154 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R3954:Ndst4
|
UTSW |
3 |
125,231,554 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4013:Ndst4
|
UTSW |
3 |
125,476,819 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4035:Ndst4
|
UTSW |
3 |
125,232,385 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4085:Ndst4
|
UTSW |
3 |
125,403,131 (GRCm39) |
missense |
probably benign |
|
|
R4496:Ndst4
|
UTSW |
3 |
125,476,922 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4498:Ndst4
|
UTSW |
3 |
125,232,007 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5187:Ndst4
|
UTSW |
3 |
125,231,560 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5233:Ndst4
|
UTSW |
3 |
125,503,766 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5518:Ndst4
|
UTSW |
3 |
125,232,105 (GRCm39) |
missense |
probably benign |
|
|
R5575:Ndst4
|
UTSW |
3 |
125,231,479 (GRCm39) |
missense |
probably benign |
0.41 |
|
R5687:Ndst4
|
UTSW |
3 |
125,232,258 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R5940:Ndst4
|
UTSW |
3 |
125,355,068 (GRCm39) |
splice site |
probably benign |
|
|
R6027:Ndst4
|
UTSW |
3 |
125,507,025 (GRCm39) |
missense |
probably benign |
0.38 |
|
R6406:Ndst4
|
UTSW |
3 |
125,232,150 (GRCm39) |
missense |
probably benign |
|
|
R6540:Ndst4
|
UTSW |
3 |
125,515,801 (GRCm39) |
nonsense |
probably null |
|
|
R6941:Ndst4
|
UTSW |
3 |
125,403,160 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R7108:Ndst4
|
UTSW |
3 |
125,355,120 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7269:Ndst4
|
UTSW |
3 |
125,232,007 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7278:Ndst4
|
UTSW |
3 |
125,231,952 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7345:Ndst4
|
UTSW |
3 |
125,508,308 (GRCm39) |
missense |
probably benign |
0.07 |
|
R7405:Ndst4
|
UTSW |
3 |
125,476,865 (GRCm39) |
missense |
probably benign |
|
|
R7418:Ndst4
|
UTSW |
3 |
125,501,800 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7592:Ndst4
|
UTSW |
3 |
125,364,436 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7714:Ndst4
|
UTSW |
3 |
125,364,493 (GRCm39) |
missense |
probably benign |
0.08 |
|
R7955:Ndst4
|
UTSW |
3 |
125,231,831 (GRCm39) |
nonsense |
probably null |
|
|
R8070:Ndst4
|
UTSW |
3 |
125,508,293 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8412:Ndst4
|
UTSW |
3 |
125,364,439 (GRCm39) |
missense |
possibly damaging |
0.76 |
|
R8553:Ndst4
|
UTSW |
3 |
125,503,756 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8744:Ndst4
|
UTSW |
3 |
125,506,989 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R8933:Ndst4
|
UTSW |
3 |
125,405,155 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8984:Ndst4
|
UTSW |
3 |
125,515,810 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9147:Ndst4
|
UTSW |
3 |
125,231,722 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9148:Ndst4
|
UTSW |
3 |
125,231,722 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9194:Ndst4
|
UTSW |
3 |
125,518,385 (GRCm39) |
missense |
probably benign |
0.19 |
|
R9196:Ndst4
|
UTSW |
3 |
125,518,385 (GRCm39) |
missense |
probably benign |
0.19 |
|
R9202:Ndst4
|
UTSW |
3 |
125,518,385 (GRCm39) |
missense |
probably benign |
0.19 |
|
R9203:Ndst4
|
UTSW |
3 |
125,518,385 (GRCm39) |
missense |
probably benign |
0.19 |
|
R9217:Ndst4
|
UTSW |
3 |
125,518,385 (GRCm39) |
missense |
probably benign |
0.19 |
|
R9311:Ndst4
|
UTSW |
3 |
125,518,385 (GRCm39) |
missense |
probably benign |
0.19 |
|
R9355:Ndst4
|
UTSW |
3 |
125,403,246 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9402:Ndst4
|
UTSW |
3 |
125,518,385 (GRCm39) |
missense |
probably benign |
0.19 |
|
R9415:Ndst4
|
UTSW |
3 |
125,518,385 (GRCm39) |
missense |
probably benign |
0.19 |
|
R9475:Ndst4
|
UTSW |
3 |
125,508,296 (GRCm39) |
nonsense |
probably null |
|
|
R9544:Ndst4
|
UTSW |
3 |
125,476,808 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9588:Ndst4
|
UTSW |
3 |
125,476,808 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9626:Ndst4
|
UTSW |
3 |
125,476,829 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9640:Ndst4
|
UTSW |
3 |
125,232,196 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9691:Ndst4
|
UTSW |
3 |
125,518,344 (GRCm39) |
missense |
unknown |
|
|
R9716:Ndst4
|
UTSW |
3 |
125,232,211 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0027:Ndst4
|
UTSW |
3 |
125,231,595 (GRCm39) |
missense |
probably benign |
|
|
Z1177:Ndst4
|
UTSW |
3 |
125,364,389 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- CCCTAGGTTCAATCTCTAGTACTGA -3'
(R):5'- TCTCCAAATTATAAAAGTAGTACCCCA -3'
Sequencing Primer
(F):5'- GGCAGGTACCTAGCTAAAGTTTCC -3'
(R):5'- CAAGGTAGGTAGTTTCATAGACCCC -3'
|
| Posted On |
2021-08-31 |
Incidental Mutation