Incidental Mutation 'R8947:Ift122'
ID 681374
Institutional Source Beutler Lab
Gene Symbol Ift122
Ensembl Gene ENSMUSG00000030323
Gene Name intraflagellar transport 122
Synonyms C86139, sopb, Wdr10
MMRRC Submission 068785-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R8947 (G1)
Quality Score 225.009
Status Validated
Chromosome 6
Chromosomal Location 115830431-115903660 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 115901368 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Aspartic acid at position 1050 (A1050D)
Ref Sequence ENSEMBL: ENSMUSP00000108547 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038234] [ENSMUST00000112923] [ENSMUST00000112925] [ENSMUST00000141305]
AlphaFold Q6NWV3
Predicted Effect probably benign
Transcript: ENSMUST00000038234
AA Change: A1051D

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000045468
Gene: ENSMUSG00000030323
AA Change: A1051D

DomainStartEndE-ValueType
WD40 1 39 7.1e1 SMART
WD40 42 81 7.16e-10 SMART
WD40 83 120 1.54e0 SMART
WD40 122 160 1.43e0 SMART
WD40 162 208 2.29e1 SMART
WD40 210 249 1.91e1 SMART
WD40 251 290 3.45e-3 SMART
WD40 448 483 1.43e1 SMART
Predicted Effect
SMART Domains Protein: ENSMUSP00000108545
Gene: ENSMUSG00000030323
AA Change: A1109D

DomainStartEndE-ValueType
WD40 1 39 7.1e1 SMART
WD40 42 81 7.16e-10 SMART
WD40 83 120 1.54e0 SMART
WD40 122 160 1.43e0 SMART
Blast:WD40 163 267 3e-46 BLAST
WD40 269 308 1.91e1 SMART
WD40 310 349 3.45e-3 SMART
WD40 507 542 1.43e1 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000112925
AA Change: A1050D

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000108547
Gene: ENSMUSG00000030323
AA Change: A1050D

DomainStartEndE-ValueType
WD40 1 39 7.1e1 SMART
WD40 42 81 7.16e-10 SMART
WD40 83 120 1.54e0 SMART
WD40 122 160 1.43e0 SMART
WD40 162 208 2.29e1 SMART
WD40 210 249 1.91e1 SMART
WD40 251 290 3.45e-3 SMART
WD40 448 483 1.43e1 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000141305
SMART Domains Protein: ENSMUSP00000138535
Gene: ENSMUSG00000030323

DomainStartEndE-ValueType
WD40 1 39 7.1e1 SMART
WD40 42 81 7.16e-10 SMART
WD40 83 120 1.54e0 SMART
low complexity region 124 134 N/A INTRINSIC
low complexity region 162 176 N/A INTRINSIC
Meta Mutation Damage Score 0.0846 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.8%
Validation Efficiency 99% (93/94)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. This cytoplasmic protein contains seven WD repeats and an AF-2 domain which function by recruiting coregulatory molecules and in transcriptional activation. Mutations in this gene cause cranioectodermal dysplasia-1. A related pseudogene is located on chromosome 3. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]
PHENOTYPE: Homozygotes for a null mutation display embryonic lethality during organogenesis with exencephaly, a ventralized caudal neural tube, preaxial polydactyly, abnormal cilia, and left-right patterning defects. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 97 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930562C15Rik T A 16: 4,665,292 (GRCm39) F141L unknown Het
A2ml1 G T 6: 128,529,219 (GRCm39) N974K probably damaging Het
Abcg8 T C 17: 84,999,246 (GRCm39) L114P probably damaging Het
Akt3 A T 1: 176,958,645 (GRCm39) W22R probably damaging Het
Ank2 C T 3: 126,736,396 (GRCm39) probably benign Het
Ap1g1 C T 8: 110,589,964 (GRCm39) probably benign Het
Arhgef19 T A 4: 140,973,618 (GRCm39) V35E possibly damaging Het
Baz2b T C 2: 59,778,583 (GRCm39) D759G probably benign Het
BC051665 C A 13: 60,930,004 (GRCm39) G320W probably damaging Het
Bche T A 3: 73,608,761 (GRCm39) T222S probably damaging Het
C8a T C 4: 104,679,326 (GRCm39) D444G probably damaging Het
Cacna1e A T 1: 154,277,896 (GRCm39) S2019T probably benign Het
Carm1 T C 9: 21,497,749 (GRCm39) I373T probably damaging Het
Ccdc39 T C 3: 33,869,609 (GRCm39) probably benign Het
Clic5 A T 17: 44,553,148 (GRCm39) probably benign Het
Cntn3 A G 6: 102,414,864 (GRCm39) F28L probably damaging Het
Col6a5 C T 9: 105,822,833 (GRCm39) E175K unknown Het
Cpb2 T C 14: 75,515,627 (GRCm39) Y352H probably damaging Het
Cpeb3 A T 19: 37,152,366 (GRCm39) D3E probably damaging Het
Ctsl T C 13: 64,514,840 (GRCm39) T155A probably damaging Het
Cygb C T 11: 116,540,645 (GRCm39) A114T probably damaging Het
Cyp11a1 T C 9: 57,924,738 (GRCm39) V17A probably benign Het
Dhcr7 T G 7: 143,400,959 (GRCm39) I374S probably damaging Het
Dhx36 T C 3: 62,380,387 (GRCm39) R807G probably benign Het
Diaph1 A T 18: 37,986,754 (GRCm39) V1077E probably damaging Het
Ehmt2 A G 17: 35,127,280 (GRCm39) E131G possibly damaging Het
Evpl A G 11: 116,112,164 (GRCm39) I1842T probably damaging Het
Fastk C A 5: 24,646,649 (GRCm39) C294F probably damaging Het
Fndc5 T C 4: 129,030,929 (GRCm39) C20R probably benign Het
Gm7298 C A 6: 121,757,553 (GRCm39) Q1053K possibly damaging Het
Gm8362 A G 14: 18,151,405 (GRCm39) probably null Het
Gmps T A 3: 63,906,098 (GRCm39) I465N probably damaging Het
Heatr4 T G 12: 84,001,431 (GRCm39) M904L probably benign Het
Hhip T A 8: 80,771,785 (GRCm39) D175V probably damaging Het
Hmcn2 G A 2: 31,278,220 (GRCm39) V1641M probably damaging Het
Hoxa5 T G 6: 52,179,776 (GRCm39) T200P probably damaging Het
Igf2bp2 C A 16: 21,897,473 (GRCm39) E247* probably null Het
Irak1bp1 T A 9: 82,728,846 (GRCm39) L259H probably damaging Het
Irgm1 G A 11: 48,759,575 (GRCm39) probably benign Het
Itih1 A T 14: 30,657,866 (GRCm39) probably benign Het
Itpk1 A T 12: 102,536,582 (GRCm39) C355S probably benign Het
Kcng4 T C 8: 120,352,452 (GRCm39) E486G possibly damaging Het
Kif20b T C 19: 34,918,629 (GRCm39) V671A possibly damaging Het
Kif28 T G 1: 179,544,320 (GRCm39) I345L possibly damaging Het
Klri2 C G 6: 129,710,742 (GRCm39) probably null Het
Kntc1 T C 5: 123,925,041 (GRCm39) V1118A probably benign Het
Lpin2 T A 17: 71,511,871 (GRCm39) I34N probably benign Het
Lrch3 T A 16: 32,802,199 (GRCm39) V264D possibly damaging Het
Lrrk2 C T 15: 91,586,473 (GRCm39) Q430* probably null Het
Map10 T G 8: 126,397,839 (GRCm39) S411A probably benign Het
Map1a A T 2: 121,135,450 (GRCm39) I2089F probably benign Het
Med12l T A 3: 58,984,443 (GRCm39) probably benign Het
Mypn T A 10: 63,005,156 (GRCm39) Q317L probably damaging Het
Ncan T A 8: 70,555,171 (GRCm39) I999F probably damaging Het
Nmrk2 C A 10: 81,035,539 (GRCm39) R134L probably damaging Het
Or4k42 C T 2: 111,320,042 (GRCm39) V154I probably benign Het
Or51f1d T A 7: 102,701,315 (GRCm39) V270E probably damaging Het
Or5k17 T C 16: 58,746,433 (GRCm39) N167S probably benign Het
Or6z7 A G 7: 6,483,246 (GRCm39) V303A probably benign Het
Or8b1c T A 9: 38,384,685 (GRCm39) I214N probably damaging Het
Osbpl1a A G 18: 12,899,858 (GRCm39) probably null Het
Pcdh1 T C 18: 38,332,073 (GRCm39) D310G possibly damaging Het
Pkn2 C T 3: 142,517,674 (GRCm39) probably null Het
Plch1 T A 3: 63,691,547 (GRCm39) M31L probably damaging Het
Polg2 A G 11: 106,659,170 (GRCm39) F448L probably damaging Het
Ppp4r3b A G 11: 29,150,758 (GRCm39) T475A possibly damaging Het
Prdm13 C T 4: 21,678,817 (GRCm39) E558K probably damaging Het
Prdm9 T A 17: 15,764,270 (GRCm39) I837F possibly damaging Het
R3hdm1 T A 1: 128,102,694 (GRCm39) M125K possibly damaging Het
Rbm39 A T 2: 155,990,276 (GRCm39) V468E probably damaging Het
Rnasel T A 1: 153,630,777 (GRCm39) V431E probably damaging Het
Rps2 T A 17: 24,940,227 (GRCm39) D220E probably benign Het
Rsf1 T C 7: 97,331,059 (GRCm39) probably benign Het
Rsph10b G T 5: 143,913,952 (GRCm39) A710S probably benign Het
Sez6 A T 11: 77,844,353 (GRCm39) T59S probably damaging Het
Sf3b1 A T 1: 55,039,444 (GRCm39) V727E probably damaging Het
Slit2 T G 5: 48,407,140 (GRCm39) L857R probably damaging Het
Spata31g1 T A 4: 42,972,097 (GRCm39) S477T probably benign Het
Sspo T G 6: 48,425,504 (GRCm39) C42G probably damaging Het
Strc C T 2: 121,201,470 (GRCm39) D1245N probably benign Het
Supv3l1 T A 10: 62,268,118 (GRCm39) T576S probably benign Het
Tecrl C T 5: 83,461,154 (GRCm39) R101Q probably benign Het
Tmeff2 A G 1: 51,220,952 (GRCm39) Y309C probably damaging Het
Tmem43 T A 6: 91,462,362 (GRCm39) W316R probably damaging Het
Tmigd3 T C 3: 105,821,554 (GRCm39) V141A probably benign Het
Trav9-1 T C 14: 53,725,584 (GRCm39) F8L probably benign Het
Trbv5 T G 6: 41,039,641 (GRCm39) F82C probably damaging Het
Ubtf T C 11: 102,205,802 (GRCm39) N41S possibly damaging Het
Uggt1 T C 1: 36,197,229 (GRCm39) T1225A probably benign Het
Vmn1r72 T C 7: 11,403,807 (GRCm39) R214G possibly damaging Het
Vmn2r12 T G 5: 109,234,522 (GRCm39) K563N possibly damaging Het
Vmn2r83 T C 10: 79,304,873 (GRCm39) S28P probably benign Het
Vwa8 T G 14: 79,438,552 (GRCm39) L1875R probably damaging Het
Xrcc6 T A 15: 81,913,866 (GRCm39) V64E probably damaging Het
Zfp292 T C 4: 34,811,835 (GRCm39) Y403C probably damaging Het
Zfp955a A T 17: 33,460,955 (GRCm39) H392Q probably damaging Het
Zfyve19 T C 2: 119,041,290 (GRCm39) S69P probably damaging Het
Other mutations in Ift122
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00227:Ift122 APN 6 115,894,018 (GRCm39) missense probably benign 0.10
IGL00783:Ift122 APN 6 115,882,863 (GRCm39) missense probably benign
IGL00784:Ift122 APN 6 115,882,863 (GRCm39) missense probably benign
IGL00799:Ift122 APN 6 115,854,497 (GRCm39) missense probably damaging 1.00
IGL00908:Ift122 APN 6 115,890,870 (GRCm39) missense probably benign 0.00
IGL01012:Ift122 APN 6 115,876,452 (GRCm39) missense probably damaging 0.99
IGL01444:Ift122 APN 6 115,861,340 (GRCm39) missense probably benign 0.08
IGL01451:Ift122 APN 6 115,889,565 (GRCm39) critical splice donor site probably null
IGL01940:Ift122 APN 6 115,864,332 (GRCm39) splice site probably benign
IGL02089:Ift122 APN 6 115,902,398 (GRCm39) missense probably benign 0.00
IGL02331:Ift122 APN 6 115,864,285 (GRCm39) missense probably damaging 1.00
IGL02929:Ift122 APN 6 115,879,838 (GRCm39) missense probably damaging 1.00
IGL03169:Ift122 APN 6 115,882,922 (GRCm39) splice site probably benign
PIT1430001:Ift122 UTSW 6 115,902,705 (GRCm39) splice site probably benign
R0158:Ift122 UTSW 6 115,901,445 (GRCm39) splice site probably benign
R0496:Ift122 UTSW 6 115,882,863 (GRCm39) missense probably benign
R1065:Ift122 UTSW 6 115,852,286 (GRCm39) splice site probably null
R1670:Ift122 UTSW 6 115,900,844 (GRCm39) missense probably benign 0.05
R1861:Ift122 UTSW 6 115,868,889 (GRCm39) missense probably damaging 1.00
R1889:Ift122 UTSW 6 115,871,382 (GRCm39) critical splice donor site probably null
R1990:Ift122 UTSW 6 115,901,328 (GRCm39) missense probably damaging 1.00
R2362:Ift122 UTSW 6 115,861,311 (GRCm39) missense probably damaging 0.99
R2385:Ift122 UTSW 6 115,889,483 (GRCm39) missense probably benign 0.21
R3734:Ift122 UTSW 6 115,902,462 (GRCm39) splice site probably benign
R3800:Ift122 UTSW 6 115,902,867 (GRCm39) missense probably benign 0.03
R3981:Ift122 UTSW 6 115,890,882 (GRCm39) missense probably benign 0.02
R4289:Ift122 UTSW 6 115,900,852 (GRCm39) missense probably damaging 1.00
R4545:Ift122 UTSW 6 115,867,549 (GRCm39) missense probably damaging 1.00
R4546:Ift122 UTSW 6 115,867,549 (GRCm39) missense probably damaging 1.00
R4641:Ift122 UTSW 6 115,865,726 (GRCm39) nonsense probably null
R4815:Ift122 UTSW 6 115,858,517 (GRCm39) missense possibly damaging 0.95
R4854:Ift122 UTSW 6 115,839,707 (GRCm39) missense possibly damaging 0.61
R4928:Ift122 UTSW 6 115,892,819 (GRCm39) utr 3 prime probably benign
R5021:Ift122 UTSW 6 115,841,333 (GRCm39) missense probably benign 0.41
R5121:Ift122 UTSW 6 115,889,495 (GRCm39) missense probably benign 0.04
R5200:Ift122 UTSW 6 115,897,340 (GRCm39) missense probably damaging 0.99
R5549:Ift122 UTSW 6 115,868,983 (GRCm39) missense probably damaging 1.00
R6111:Ift122 UTSW 6 115,852,247 (GRCm39) missense probably damaging 1.00
R6141:Ift122 UTSW 6 115,892,972 (GRCm39) missense probably damaging 0.99
R6766:Ift122 UTSW 6 115,903,204 (GRCm39) missense probably benign 0.15
R7379:Ift122 UTSW 6 115,903,263 (GRCm39) missense probably benign
R7402:Ift122 UTSW 6 115,871,283 (GRCm39) missense probably benign 0.00
R7436:Ift122 UTSW 6 115,903,263 (GRCm39) missense probably benign
R7437:Ift122 UTSW 6 115,903,263 (GRCm39) missense probably benign
R7438:Ift122 UTSW 6 115,903,263 (GRCm39) missense probably benign
R7517:Ift122 UTSW 6 115,867,543 (GRCm39) missense probably benign 0.37
R7978:Ift122 UTSW 6 115,897,313 (GRCm39) missense probably benign 0.37
R8492:Ift122 UTSW 6 115,863,966 (GRCm39) missense probably benign 0.02
R8493:Ift122 UTSW 6 115,887,292 (GRCm39) missense probably benign 0.01
R8669:Ift122 UTSW 6 115,900,252 (GRCm39) missense probably damaging 0.98
R8867:Ift122 UTSW 6 115,857,632 (GRCm39) missense probably damaging 1.00
R8887:Ift122 UTSW 6 115,868,880 (GRCm39) missense probably benign 0.00
R8978:Ift122 UTSW 6 115,902,769 (GRCm39) missense possibly damaging 0.78
R9149:Ift122 UTSW 6 115,867,492 (GRCm39) missense probably damaging 1.00
R9571:Ift122 UTSW 6 115,857,628 (GRCm39) missense possibly damaging 0.50
R9573:Ift122 UTSW 6 115,857,646 (GRCm39) missense probably benign
R9677:Ift122 UTSW 6 115,897,357 (GRCm39) missense probably benign 0.16
Z1176:Ift122 UTSW 6 115,892,955 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CATAGTGGCTGCTTGGGAAAG -3'
(R):5'- AGATGAAGGGGACACTCTCC -3'

Sequencing Primer
(F):5'- AAGGGGACATGCTCTGGCTG -3'
(R):5'- TCACTATGTGAGGACCTCCCCAG -3'
Posted On 2021-08-31