Mutagenetix > Incidental Mutation

Incidental Mutation 'R8957:Jmjd4'

682114

Institutional Source

Beutler Lab

Gene Symbol

Jmjd4

Ensembl Gene

ENSMUSG00000036819

Gene Name

jumonji domain containing 4

Synonyms

MMRRC Submission

068793-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.135) question?

Stock #

R8957 (G1)

Quality Score

106.062

Status

Validated

Chromosome

Chromosomal Location

59340871-59349393 bp(+) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

C to T at 59340884 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000121880 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000010038] [ENSMUST00000045279] [ENSMUST00000108777] [ENSMUST00000120940] [ENSMUST00000125846] [ENSMUST00000132969] [ENSMUST00000136436] [ENSMUST00000145550] [ENSMUST00000147163] [ENSMUST00000150297] [ENSMUST00000156146]

AlphaFold

Q8BFT6

Predicted Effect

probably benign
Transcript: ENSMUST00000010038

SMART Domains

Protein: ENSMUSP00000010038
Gene: ENSMUSG00000009894

Domain	Start	End	E-Value	Type
coiled coil region	125	173	N/A	INTRINSIC
SCOP:d1fpza_	181	234	3e-3	SMART
low complexity region	335	349	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000045279

SMART Domains

Protein: ENSMUSP00000043473
Gene: ENSMUSG00000036819

Domain	Start	End	E-Value	Type
low complexity region	19	33	N/A	INTRINSIC
Blast:JmjC	34	89	2e-21	BLAST
Blast:JmjC	103	144	1e-18	BLAST
JmjC	147	294	1.56e-13	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000108777

SMART Domains

Protein: ENSMUSP00000104407
Gene: ENSMUSG00000036819

Domain	Start	End	E-Value	Type
low complexity region	19	33	N/A	INTRINSIC
Blast:JmjC	34	89	3e-21	BLAST
JmjC	147	306	1.84e-24	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000120940

SMART Domains

Protein: ENSMUSP00000113555
Gene: ENSMUSG00000009894

Domain	Start	End	E-Value	Type
coiled coil region	125	173	N/A	INTRINSIC
SCOP:d1fpza_	181	234	3e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000125846

Predicted Effect

probably benign
Transcript: ENSMUST00000132969

SMART Domains

Protein: ENSMUSP00000116170
Gene: ENSMUSG00000009894

Domain	Start	End	E-Value	Type
coiled coil region	125	147	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000136436

SMART Domains

Protein: ENSMUSP00000115762
Gene: ENSMUSG00000009894

Domain	Start	End	E-Value	Type
coiled coil region	125	173	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000145550

Predicted Effect

probably benign
Transcript: ENSMUST00000147163

SMART Domains

Protein: ENSMUSP00000123531
Gene: ENSMUSG00000036819

Domain	Start	End	E-Value	Type
low complexity region	19	33	N/A	INTRINSIC
Blast:JmjC	68	152	8e-38	BLAST
Blast:JmjC	152	190	2e-15	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000150297

Predicted Effect

probably benign
Transcript: ENSMUST00000156146

SMART Domains

Protein: ENSMUSP00000121880
Gene: ENSMUSG00000009894

Domain	Start	End	E-Value	Type
coiled coil region	125	173	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.4%

Validation Efficiency

100% (66/66)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele are healthy, fertile and physiologically normal. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1500011B03Rik	A	G	5: 114,951,891 (GRCm39)	V28A	probably benign	Het
Abca12	T	A	1: 71,360,784 (GRCm39)	D503V	possibly damaging	Het
Aco2	A	T	15: 81,773,701 (GRCm39)		probably benign	Het
Aff1	A	G	5: 103,981,634 (GRCm39)	Q591R	possibly damaging	Het
Ankle2	G	A	5: 110,379,121 (GRCm39)	A7T	possibly damaging	Het
Ankrd12	T	C	17: 66,291,491 (GRCm39)	N1314S	probably benign	Het
Apeh	A	T	9: 107,969,572 (GRCm39)	M216K	probably benign	Het
Armh1	T	C	4: 117,087,104 (GRCm39)	Y187C	probably damaging	Het
Ascc3	C	A	10: 50,576,208 (GRCm39)	A821E	probably damaging	Het
Atf7ip	A	G	6: 136,543,701 (GRCm39)	D650G	probably null	Het
Cav1	T	A	6: 17,339,235 (GRCm39)	F107I	probably benign	Het
Ccdc146	A	G	5: 21,514,585 (GRCm39)		probably benign	Het
Ccdc57	A	G	11: 120,776,861 (GRCm39)	I513T	probably benign	Het
Ccrl2	T	C	9: 110,884,557 (GRCm39)	R314G	probably benign	Het
Cd1d1	T	C	3: 86,906,140 (GRCm39)	D45G	probably damaging	Het
Cfap74	G	A	4: 155,521,187 (GRCm39)	E620K		Het
Col4a1	T	A	8: 11,295,906 (GRCm39)		probably benign	Het
Cux2	C	T	5: 121,999,011 (GRCm39)	G1310R	probably benign	Het
Cyld	G	T	8: 89,432,410 (GRCm39)	R136L	probably damaging	Het
Cyp4v3	A	T	8: 45,760,018 (GRCm39)	N511K	probably benign	Het
Dchs2	G	A	3: 83,189,573 (GRCm39)	V1646M		Het
Des	A	T	1: 75,340,295 (GRCm39)	I401F	probably damaging	Het
Dis3	T	C	14: 99,337,027 (GRCm39)	D28G	probably damaging	Het
Dnai4	T	C	4: 102,953,950 (GRCm39)	D83G	probably damaging	Het
Ehd1	A	G	19: 6,344,439 (GRCm39)	Y233C	probably damaging	Het
Fcrlb	G	A	1: 170,735,536 (GRCm39)	A246V	probably benign	Het
Firrm	C	T	1: 163,792,335 (GRCm39)	R554H	probably damaging	Het
Fnta	T	C	8: 26,489,541 (GRCm39)	R357G	probably benign	Het
Fpgs	T	C	2: 32,575,354 (GRCm39)	D420G	probably damaging	Het
Hdac4	T	C	1: 91,873,757 (GRCm39)		probably null	Het
Hdhd5	C	T	6: 120,495,404 (GRCm39)		probably null	Het
Iqgap2	G	A	13: 95,772,154 (GRCm39)	R1342C	probably damaging	Het
Isyna1	T	G	8: 71,049,372 (GRCm39)	L428R	probably damaging	Het
Klra1	A	G	6: 130,357,609 (GRCm39)	V6A	possibly damaging	Het
Klrb1b	T	A	6: 128,795,522 (GRCm39)	K124N	probably benign	Het
Krtap19-3	T	C	16: 88,674,833 (GRCm39)		probably benign	Het
Lrrc74b	T	C	16: 17,378,976 (GRCm39)	T34A	probably benign	Het
Map9	A	G	3: 82,278,687 (GRCm39)	Y229C	probably benign	Het
Mmp28	T	C	11: 83,334,636 (GRCm39)	I373V	possibly damaging	Het
Mpdz	A	T	4: 81,251,216 (GRCm39)	Y1086*	probably null	Het
Myct1	C	T	10: 5,554,208 (GRCm39)	T25I	probably damaging	Het
Myh4	A	G	11: 67,141,780 (GRCm39)	K880E	possibly damaging	Het
Nav2	T	G	7: 49,220,964 (GRCm39)	V1656G	probably damaging	Het
Or12d13	A	G	17: 37,647,382 (GRCm39)	V247A	probably damaging	Het
Or1a1	T	A	11: 74,086,772 (GRCm39)	S148T	probably damaging	Het
Or5b101	T	A	19: 13,004,881 (GRCm39)	I271F	probably benign	Het
Pate2	T	C	9: 35,596,911 (GRCm39)	W100R	probably benign	Het
Pcdhb11	A	C	18: 37,554,692 (GRCm39)	K7N	probably benign	Het
Pcdhb11	A	G	18: 37,555,872 (GRCm39)	T401A	probably benign	Het
Pgam1	T	A	19: 41,905,215 (GRCm39)	I183N	possibly damaging	Het
Pou5f1	T	G	17: 35,821,366 (GRCm39)	L326R	possibly damaging	Het
Rbm34	A	C	8: 127,692,208 (GRCm39)	V178G	probably benign	Het
Rc3h2	A	G	2: 37,289,660 (GRCm39)	V384A	possibly damaging	Het
Sec62	T	A	3: 30,864,671 (GRCm39)	F178L	unknown	Het
Slco1a6	T	C	6: 142,091,493 (GRCm39)	N69S	probably damaging	Het
Smok2b	T	A	17: 13,453,873 (GRCm39)	L11Q	probably damaging	Het
Snai2	T	C	16: 14,526,113 (GRCm39)	S255P	probably damaging	Het
Spata31h1	A	G	10: 82,124,908 (GRCm39)	Y2701H	probably benign	Het
Tesk2	T	A	4: 116,659,910 (GRCm39)	F343I	probably benign	Het
Tmem106c	A	T	15: 97,867,481 (GRCm39)	I222F	probably benign	Het
Tmub1	G	T	5: 24,651,775 (GRCm39)	T63K	probably benign	Het
Tnip3	A	G	6: 65,582,843 (GRCm39)	T217A	probably benign	Het
Vmn2r10	T	G	5: 109,149,780 (GRCm39)	K421N	possibly damaging	Het
Zfp975	A	T	7: 42,311,157 (GRCm39)	H485Q	probably damaging	Het

Other mutations in Jmjd4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00334:Jmjd4	APN	11	59,346,140 (GRCm39)	missense	probably damaging	1.00
IGL00434:Jmjd4	APN	11	59,341,321 (GRCm39)	missense	probably damaging	1.00
IGL00863:Jmjd4	APN	11	59,341,569 (GRCm39)	missense	probably benign
IGL02566:Jmjd4	APN	11	59,345,880 (GRCm39)	missense	probably damaging	0.99
R0048:Jmjd4	UTSW	11	59,344,778 (GRCm39)	missense	probably benign
R1678:Jmjd4	UTSW	11	59,344,438 (GRCm39)	missense	probably damaging	1.00
R2131:Jmjd4	UTSW	11	59,345,781 (GRCm39)	missense	probably damaging	1.00
R4823:Jmjd4	UTSW	11	59,346,406 (GRCm39)	missense	probably benign	0.00
R5621:Jmjd4	UTSW	11	59,341,219 (GRCm39)	missense	probably damaging	0.99
R6053:Jmjd4	UTSW	11	59,344,870 (GRCm39)	missense	probably damaging	1.00
R6664:Jmjd4	UTSW	11	59,341,245 (GRCm39)	missense	probably benign	0.22
R7816:Jmjd4	UTSW	11	59,341,162 (GRCm39)	missense	probably benign	0.31
R8080:Jmjd4	UTSW	11	59,341,179 (GRCm39)	missense	probably benign
R9356:Jmjd4	UTSW	11	59,345,761 (GRCm39)	missense	probably benign
R9732:Jmjd4	UTSW	11	59,341,339 (GRCm39)	critical splice donor site	probably null
X0018:Jmjd4	UTSW	11	59,345,880 (GRCm39)	missense	probably damaging	0.99
Z1177:Jmjd4	UTSW	11	59,341,100 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GACTGATGTTCATCTCCTGTGTCG -3'
(R):5'- TCTGAATGAAGGTCACGCCG -3'

Sequencing Primer
(F):5'- CATCTCCTGTGTCGGTGGC -3'
(R):5'- TAGTACCGCTCGGCAAAGGTG -3'

Posted On

2021-08-31