Mutagenetix > Incidental Mutation

Incidental Mutation 'R8958:Brdt'

682158

Institutional Source

Beutler Lab

Gene Symbol

Brdt

Ensembl Gene

ENSMUSG00000029279

Gene Name

bromodomain, testis-specific

Synonyms

7420412D09Rik, Brd6, Fsrg3

MMRRC Submission

068794-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8958 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

107479025-107534924 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 107525877 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 910 (V910A)

Ref Sequence

ENSEMBL: ENSMUSP00000031215 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031215]

AlphaFold

Q91Y44

PDB Structure

Structure of Brdt bromodomain 2 bound to an acetylated histone H3 peptide [X-RAY DIFFRACTION]
Structure of Brdt bromodomain BD1 bound to a diacetylated histone H4 peptide. [X-RAY DIFFRACTION]

Predicted Effect

probably benign
Transcript: ENSMUST00000031215
AA Change: V910A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000031215
Gene: ENSMUSG00000029279
AA Change: V910A

Domain	Start	End	E-Value	Type
BROMO	24	134	2.7e-45	SMART
BROMO	268	377	2.18e-40	SMART
low complexity region	392	417	N/A	INTRINSIC
low complexity region	446	455	N/A	INTRINSIC
low complexity region	472	500	N/A	INTRINSIC
Pfam:BET	505	569	9.2e-34	PFAM
low complexity region	585	603	N/A	INTRINSIC
low complexity region	649	691	N/A	INTRINSIC
low complexity region	895	909	N/A	INTRINSIC
Pfam:BRD4_CDT	913	956	3e-26	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 97.8%

Validation Efficiency

MGI Phenotype

FUNCTION: The protein encoded by this gene belongs to the BET protein family. BET proteins have two N-terminal bromodomains and one C-terminal extraterminal domain (ET domain). BET proteins regulate chromatin reorganization via binding to acetylated histones. This gene is thought to play a role in the transcriptional regulation of spermatogenesis. Although referred to as testis-specific bromodomain (Brdt) protein, RT-PCR indicates that this gene is expressed in both mouse oocytes and testes. Alternative splicing results in multiple transcript variants encoding different proteins. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous inactivation of this genes leads to arrest of spermatogenesis and male infertility. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam17	A	T	12: 21,399,934 (GRCm39)	N157K	possibly damaging	Het
Adck2	T	C	6: 39,560,848 (GRCm39)	V412A	probably benign	Het
Adgrb3	C	T	1: 25,865,190 (GRCm39)	V11I	possibly damaging	Het
Arhgef17	T	C	7: 100,579,019 (GRCm39)	D643G	probably damaging	Het
Arvcf	A	G	16: 18,221,376 (GRCm39)	Q597R	probably damaging	Het
Cachd1	A	G	4: 100,851,283 (GRCm39)	D1167G	probably benign	Het
Ccdc187	A	C	2: 26,165,577 (GRCm39)	S860A	probably benign	Het
Ccdc28a	T	C	10: 18,089,926 (GRCm39)	I113M	probably benign	Het
Cdc5l	T	C	17: 45,704,127 (GRCm39)	N699S	probably benign	Het
Cenpf	A	T	1: 189,385,350 (GRCm39)	I2310K	possibly damaging	Het
Ch25h	A	T	19: 34,452,414 (GRCm39)	I38N	probably benign	Het
Chrdl2	C	A	7: 99,670,129 (GRCm39)	P84Q	probably damaging	Het
Cltc	A	T	11: 86,586,403 (GRCm39)	Y1673N	possibly damaging	Het
Cr1l	C	G	1: 194,812,243 (GRCm39)	G27R	probably damaging	Het
Crebbp	G	A	16: 4,031,172 (GRCm39)		probably benign	Het
Dync1h1	G	A	12: 110,586,805 (GRCm39)	E929K	probably benign	Het
E2f7	C	A	10: 110,601,615 (GRCm39)	P324Q	probably damaging	Het
Eif3b	A	G	5: 140,411,194 (GRCm39)	D215G	probably benign	Het
Ephb1	A	G	9: 102,072,614 (GRCm39)	I55T	probably damaging	Het
Fbxw14	A	T	9: 109,107,810 (GRCm39)	L188Q	probably damaging	Het
Foxg1	T	C	12: 49,431,944 (GRCm39)	S226P	probably damaging	Het
Gbe1	T	C	16: 70,275,210 (GRCm39)	F337L	probably damaging	Het
Glg1	A	T	8: 111,899,116 (GRCm39)	C716*	probably null	Het
Gp1ba	C	G	11: 70,531,730 (GRCm39)		probably benign	Het
Grm7	C	T	6: 111,472,783 (GRCm39)	S36L	probably damaging	Het
H2-M5	T	A	17: 37,299,520 (GRCm39)	I167F	probably damaging	Het
H3c6	T	C	13: 23,746,421 (GRCm39)	H40R	possibly damaging	Het
Hycc1	A	G	5: 24,169,934 (GRCm39)	C472R	probably benign	Het
Il18rap	C	T	1: 40,582,177 (GRCm39)	T366M	probably benign	Het
Ino80	C	T	2: 119,213,862 (GRCm39)	R1236H	probably damaging	Het
Ism1	T	A	2: 139,573,995 (GRCm39)	I115N	possibly damaging	Het
Kdm4a	A	G	4: 117,999,573 (GRCm39)	S950P	probably benign	Het
Lama5	T	C	2: 179,835,592 (GRCm39)	T1254A	probably benign	Het
Lipo2	T	A	19: 33,698,361 (GRCm39)	K339*	probably null	Het
Lrrc7	T	C	3: 157,946,138 (GRCm39)	K187R	probably benign	Het
Mkrn2os	G	C	6: 115,562,317 (GRCm39)	S215R	probably benign	Het
Myzap	G	T	9: 71,457,485 (GRCm39)	D303E	possibly damaging	Het
Naa11	T	C	5: 97,540,084 (GRCm39)	N25D	probably damaging	Het
Naip5	T	A	13: 100,354,117 (GRCm39)	K1149*	probably null	Het
Obscn	C	T	11: 58,964,158 (GRCm39)	V3083M	probably damaging	Het
Or10d1	T	C	9: 39,484,091 (GRCm39)	T155A	probably benign	Het
Or4k48	T	C	2: 111,476,070 (GRCm39)	T91A	possibly damaging	Het
Parn	T	A	16: 13,466,322 (GRCm39)	E241D	possibly damaging	Het
Pax1	T	A	2: 147,210,517 (GRCm39)		probably null	Het
Pclo	A	T	5: 14,725,369 (GRCm39)	E1409V	unknown	Het
Pclo	A	G	5: 14,763,056 (GRCm39)	Y3843C	unknown	Het
Ppp2r3d	A	T	9: 101,088,634 (GRCm39)	M563K	probably benign	Het
Prdm1	T	G	10: 44,316,729 (GRCm39)	K623Q	probably damaging	Het
Ptpn13	T	C	5: 103,698,973 (GRCm39)	V1152A	probably benign	Het
Ptx3	G	A	3: 66,128,391 (GRCm39)	A151T	probably benign	Het
Rab11fip1	T	C	8: 27,644,940 (GRCm39)	S282G	possibly damaging	Het
Ros1	G	T	10: 51,972,190 (GRCm39)	N1641K	probably damaging	Het
Syne1	T	C	10: 5,181,768 (GRCm39)	K4189R	probably benign	Het
Tcf3	T	C	10: 80,246,091 (GRCm39)	K611E	probably damaging	Het
Tmem215	A	G	4: 40,474,376 (GRCm39)	Q151R	probably benign	Het
Trappc8	T	C	18: 21,003,667 (GRCm39)	I254V	probably benign	Het
Trim46	T	C	3: 89,143,760 (GRCm39)	D556G	probably damaging	Het
Wdr97	A	T	15: 76,245,694 (GRCm39)	E1310D		Het
Zfp513	C	A	5: 31,356,825 (GRCm39)	R487L	probably damaging	Het
Zmpste24	C	A	4: 120,944,508 (GRCm39)	E97*	probably null	Het

Other mutations in Brdt

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02342:Brdt	APN	5	107,490,069 (GRCm39)	missense	probably damaging	1.00
IGL02718:Brdt	APN	5	107,497,934 (GRCm39)	splice site	probably benign
IGL02746:Brdt	APN	5	107,518,190 (GRCm39)	missense	probably benign
IGL02851:Brdt	APN	5	107,525,861 (GRCm39)	missense	possibly damaging	0.47
R0585:Brdt	UTSW	5	107,504,748 (GRCm39)	critical splice donor site	probably null
R0708:Brdt	UTSW	5	107,506,766 (GRCm39)	nonsense	probably null
R1338:Brdt	UTSW	5	107,498,054 (GRCm39)	missense	probably benign	0.02
R1710:Brdt	UTSW	5	107,491,450 (GRCm39)	missense	probably damaging	1.00
R1794:Brdt	UTSW	5	107,507,719 (GRCm39)	small deletion	probably benign
R1861:Brdt	UTSW	5	107,507,324 (GRCm39)	missense	probably benign
R1913:Brdt	UTSW	5	107,496,479 (GRCm39)	missense	probably benign
R2029:Brdt	UTSW	5	107,507,090 (GRCm39)	missense	probably benign	0.35
R2431:Brdt	UTSW	5	107,525,881 (GRCm39)	splice site	probably null
R3121:Brdt	UTSW	5	107,525,011 (GRCm39)	missense	probably damaging	0.99
R3122:Brdt	UTSW	5	107,525,011 (GRCm39)	missense	probably damaging	0.99
R4258:Brdt	UTSW	5	107,507,775 (GRCm39)	missense	probably damaging	0.97
R4609:Brdt	UTSW	5	107,507,802 (GRCm39)	missense	probably benign	0.00
R5306:Brdt	UTSW	5	107,493,010 (GRCm39)	missense	probably damaging	1.00
R5640:Brdt	UTSW	5	107,507,174 (GRCm39)	nonsense	probably null
R5677:Brdt	UTSW	5	107,496,483 (GRCm39)	missense	possibly damaging	0.85
R5936:Brdt	UTSW	5	107,507,261 (GRCm39)	missense	probably damaging	1.00
R6145:Brdt	UTSW	5	107,525,865 (GRCm39)	missense	possibly damaging	0.67
R6261:Brdt	UTSW	5	107,496,369 (GRCm39)	missense	probably benign	0.04
R6408:Brdt	UTSW	5	107,533,358 (GRCm39)	missense	probably damaging	1.00
R6930:Brdt	UTSW	5	107,507,081 (GRCm39)	missense	probably benign	0.35
R7372:Brdt	UTSW	5	107,518,160 (GRCm39)	missense	possibly damaging	0.49
R7741:Brdt	UTSW	5	107,506,752 (GRCm39)	missense	probably benign	0.00
R7842:Brdt	UTSW	5	107,496,454 (GRCm39)	missense	possibly damaging	0.49
R7869:Brdt	UTSW	5	107,518,045 (GRCm39)	missense	probably benign	0.04
R7887:Brdt	UTSW	5	107,507,799 (GRCm39)	missense	possibly damaging	0.66
R7972:Brdt	UTSW	5	107,496,415 (GRCm39)	missense	possibly damaging	0.53
R8064:Brdt	UTSW	5	107,525,862 (GRCm39)	nonsense	probably null
R9199:Brdt	UTSW	5	107,498,029 (GRCm39)	nonsense	probably null
R9346:Brdt	UTSW	5	107,524,880 (GRCm39)	missense	probably damaging	0.99
X0011:Brdt	UTSW	5	107,524,958 (GRCm39)	missense	probably damaging	1.00
X0011:Brdt	UTSW	5	107,489,994 (GRCm39)	missense	probably damaging	0.96
Z1176:Brdt	UTSW	5	107,507,764 (GRCm39)	missense	possibly damaging	0.70

Predicted Primers

PCR Primer
(F):5'- CCAGGACATGGCTTTCTGTAG -3'
(R):5'- AGTGATTGCCCCACTCACAC -3'

Sequencing Primer
(F):5'- ACATGGCTTTCTGTAGTTGTTTAATC -3'
(R):5'- CAGTCTAATGGTCCCACAGTGTG -3'

Posted On

2021-08-31