Incidental Mutation 'R8962:Itgb7'
ID 682433
Institutional Source Beutler Lab
Gene Symbol Itgb7
Ensembl Gene ENSMUSG00000001281
Gene Name integrin beta 7
Synonyms
MMRRC Submission 068796-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.217) question?
Stock # R8962 (G1)
Quality Score 225.009
Status Validated
Chromosome 15
Chromosomal Location 102124430-102140379 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 102127037 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Serine at position 466 (L466S)
Ref Sequence ENSEMBL: ENSMUSP00000001327 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000001327] [ENSMUST00000118729] [ENSMUST00000119168] [ENSMUST00000119800]
AlphaFold P26011
Predicted Effect probably damaging
Transcript: ENSMUST00000001327
AA Change: L466S

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000001327
Gene: ENSMUSG00000001281
AA Change: L466S

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
PSI 44 92 6.35e-6 SMART
INB 50 476 2.82e-273 SMART
VWA 151 383 7.52e-2 SMART
low complexity region 537 557 N/A INTRINSIC
Pfam:EGF_2 605 635 2.6e-7 PFAM
Integrin_B_tail 645 721 4.22e-18 SMART
low complexity region 732 744 N/A INTRINSIC
Integrin_b_cyt 746 792 7.82e-22 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000118729
SMART Domains Protein: ENSMUSP00000112985
Gene: ENSMUSG00000046897

DomainStartEndE-ValueType
low complexity region 53 62 N/A INTRINSIC
ZnF_C2H2 76 98 3.07e-1 SMART
ZnF_C2H2 104 126 1.69e-3 SMART
ZnF_C2H2 132 152 4.99e1 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000119168
Predicted Effect probably benign
Transcript: ENSMUST00000119800
SMART Domains Protein: ENSMUSP00000113770
Gene: ENSMUSG00000046897

DomainStartEndE-ValueType
low complexity region 65 74 N/A INTRINSIC
ZnF_C2H2 88 110 3.07e-1 SMART
ZnF_C2H2 116 138 1.69e-3 SMART
ZnF_C2H2 144 164 4.99e1 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000229440
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.3%
  • 20x: 97.4%
Validation Efficiency 99% (86/87)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that is a member of the integrin superfamily. Members of this family are adhesion receptors that function in signaling from the extracellular matrix to the cell. Integrins are heterodimeric integral membrane proteins composed of an alpha chain and a beta chain. The encoded protein forms dimers with an alpha4 chain or an alphaE chain and plays a role in leukocyte adhesion. Dimerization with alpha4 forms a homing receptor for migration of lymphocytes to the intestinal mucosa and Peyer's patches. Dimerization with alphaE permits binding to the ligand epithelial cadherin, a calcium-dependent adhesion molecule. Alternate splicing results in multiple transcript variants. Additional alternatively spliced transcript variants of this gene have been described, but their full-length nature is not known. [provided by RefSeq, Sep 2013]
PHENOTYPE: Homozygous null mice display hypoplasia of gut-associated lymph tissue due to defects in lymphocyte migration [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 86 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4931429L15Rik T A 9: 46,220,173 (GRCm39) M120L probably benign Het
Abat A G 16: 8,396,166 (GRCm39) T48A probably damaging Het
Abca8a A T 11: 109,969,634 (GRCm39) I314N probably damaging Het
Abr A T 11: 76,352,155 (GRCm39) V108D probably damaging Het
Adamts17 T G 7: 66,725,057 (GRCm39) L162V probably damaging Het
Adamts6 A T 13: 104,433,899 (GRCm39) K109N probably damaging Het
Ago3 A G 4: 126,241,595 (GRCm39) F68S probably damaging Het
Aifm3 T C 16: 17,324,200 (GRCm39) probably null Het
Ankrd26 T C 6: 118,512,104 (GRCm39) E506G probably benign Het
Apaf1 A G 10: 90,903,066 (GRCm39) L185P probably damaging Het
Atp8b3 G T 10: 80,355,896 (GRCm39) T1272K probably benign Het
Cars2 A G 8: 11,587,304 (GRCm39) V193A probably benign Het
Ccn5 C T 2: 163,667,160 (GRCm39) R54* probably null Het
Ccr8 A T 9: 119,923,613 (GRCm39) I243F possibly damaging Het
Col12a1 A G 9: 79,538,901 (GRCm39) V2465A probably damaging Het
Ctbp1 T C 5: 33,416,616 (GRCm39) N127S probably benign Het
Ddx10 A G 9: 53,149,377 (GRCm39) S117P probably damaging Het
Dgkb T C 12: 38,189,494 (GRCm39) probably null Het
Dnah11 T A 12: 117,916,273 (GRCm39) D3520V probably damaging Het
Dnah11 C T 12: 117,918,630 (GRCm39) D1530N probably damaging Het
Dock5 T C 14: 67,994,640 (GRCm39) T1807A probably benign Het
Drd3 C T 16: 43,641,842 (GRCm39) T386I probably damaging Het
Dsg1b A G 18: 20,542,316 (GRCm39) N941S probably damaging Het
Enpp3 T C 10: 24,696,513 (GRCm39) T141A probably benign Het
Esyt1 A T 10: 128,356,566 (GRCm39) C360S possibly damaging Het
Ethe1 T A 7: 24,305,682 (GRCm39) V143D probably damaging Het
Fam170b A G 14: 32,557,336 (GRCm39) D57G probably benign Het
Fam53c T C 18: 34,901,229 (GRCm39) S49P probably damaging Het
Fbp1 G A 13: 63,023,067 (GRCm39) L77F probably benign Het
Gm17093 A G 14: 44,758,149 (GRCm39) E110G Het
Gm21976 G T 13: 98,423,821 (GRCm39) silent Het
Golgb1 T C 16: 36,733,978 (GRCm39) I1075T probably damaging Het
Grip2 T C 6: 91,754,391 (GRCm39) D628G probably damaging Het
Gtpbp1 G T 15: 79,601,929 (GRCm39) L557F probably benign Het
Ighv12-3 A T 12: 114,330,204 (GRCm39) F97Y probably benign Het
Itga8 T C 2: 12,196,045 (GRCm39) H635R possibly damaging Het
Klc2 T C 19: 5,161,864 (GRCm39) D277G probably benign Het
Ktn1 A G 14: 47,901,248 (GRCm39) E2G probably damaging Het
Lcmt1 T A 7: 123,000,669 (GRCm39) Y68N probably damaging Het
Marchf10 G T 11: 105,280,815 (GRCm39) S490* probably null Het
Mterf1b A T 5: 4,246,437 (GRCm39) Y26F probably benign Het
Myo18b T A 5: 113,006,346 (GRCm39) I855F probably benign Het
Nek4 G A 14: 30,675,915 (GRCm39) M83I probably damaging Het
Nicn1 C T 9: 108,171,708 (GRCm39) R163C possibly damaging Het
Nos1 T C 5: 118,017,405 (GRCm39) V256A probably benign Het
Nr1h2 T C 7: 44,201,463 (GRCm39) T50A probably benign Het
Or14c42-ps1 T A 7: 86,211,317 (GRCm39) *126K probably null Het
Or4n4 A C 14: 50,518,816 (GRCm39) M298R possibly damaging Het
Ovol2 G C 2: 144,147,834 (GRCm39) R172G probably damaging Het
Parp14 A G 16: 35,677,187 (GRCm39) I927T probably damaging Het
Pcdhga7 T A 18: 37,848,879 (GRCm39) H295Q probably benign Het
Pkhd1l1 C T 15: 44,400,291 (GRCm39) T2145I probably damaging Het
Plekhs1 C T 19: 56,461,680 (GRCm39) T139I possibly damaging Het
Rab11fip3 T A 17: 26,231,007 (GRCm39) D746V probably damaging Het
Rnf214 A C 9: 45,809,728 (GRCm39) probably null Het
Rtn4ip1 A T 10: 43,822,415 (GRCm39) probably null Het
S1pr1 T C 3: 115,505,569 (GRCm39) R342G Het
Serpina1f T C 12: 103,656,131 (GRCm39) S366G probably benign Het
Sestd1 A T 2: 77,042,708 (GRCm39) M282K probably benign Het
Siglecf T G 7: 43,001,140 (GRCm39) V36G probably damaging Het
Slc1a1 T C 19: 28,886,869 (GRCm39) V410A probably damaging Het
Slc38a4 C A 15: 96,917,684 (GRCm39) D14Y probably benign Het
Slk C T 19: 47,610,748 (GRCm39) T806M probably damaging Het
Slurp2 C A 15: 74,615,249 (GRCm39) V48F possibly damaging Het
Socs1 A G 16: 10,602,642 (GRCm39) S32P possibly damaging Het
Son T C 16: 91,455,057 (GRCm39) V1268A possibly damaging Het
Sp7 C A 15: 102,274,880 (GRCm39) probably benign Het
Speer4a2 T G 5: 26,290,745 (GRCm39) E142A probably benign Het
Taar7b T G 10: 23,876,359 (GRCm39) S175A probably benign Het
Tet2 T C 3: 133,193,804 (GRCm39) N210S probably benign Het
Tkfc T C 19: 10,570,700 (GRCm39) D492G probably damaging Het
Tmc7 G A 7: 118,160,228 (GRCm39) P203L probably benign Het
Trmt9b A G 8: 36,972,729 (GRCm39) K60E probably damaging Het
Tshz2 C A 2: 169,726,524 (GRCm39) F373L probably damaging Het
Ttc29 T A 8: 79,042,336 (GRCm39) L307Q probably damaging Het
Tubd1 G A 11: 86,439,659 (GRCm39) M1I probably null Het
Vmn1r62 T A 7: 5,678,601 (GRCm39) M94K probably damaging Het
Vmn2r125 T C 4: 156,703,186 (GRCm39) I188T possibly damaging Het
Vmn2r5 T C 3: 64,398,564 (GRCm39) D805G probably damaging Het
Vmn2r6 A T 3: 64,463,576 (GRCm39) D419E probably damaging Het
Vps39 A T 2: 120,174,687 (GRCm39) Y98* probably null Het
Zdbf2 G A 1: 63,347,162 (GRCm39) G1847D probably benign Het
Zdhhc6 T C 19: 55,287,239 (GRCm39) E407G probably benign Het
Zfp407 A G 18: 84,577,057 (GRCm39) I1352T probably damaging Het
Zfp607a A G 7: 27,578,786 (GRCm39) K619E possibly damaging Het
Zfp811 A T 17: 33,017,622 (GRCm39) N139K probably benign Het
Other mutations in Itgb7
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01012:Itgb7 APN 15 102,136,020 (GRCm39) missense probably benign 0.22
IGL01574:Itgb7 APN 15 102,135,975 (GRCm39) missense possibly damaging 0.83
IGL01814:Itgb7 APN 15 102,131,852 (GRCm39) missense possibly damaging 0.78
IGL01875:Itgb7 APN 15 102,126,430 (GRCm39) missense probably damaging 1.00
IGL01996:Itgb7 APN 15 102,126,412 (GRCm39) missense probably damaging 1.00
IGL02320:Itgb7 APN 15 102,132,772 (GRCm39) missense probably benign 0.04
IGL02541:Itgb7 APN 15 102,131,892 (GRCm39) missense probably benign 0.05
IGL02547:Itgb7 APN 15 102,126,945 (GRCm39) missense probably damaging 1.00
R0083:Itgb7 UTSW 15 102,131,917 (GRCm39) missense probably damaging 0.98
R0108:Itgb7 UTSW 15 102,131,917 (GRCm39) missense probably damaging 0.98
R0195:Itgb7 UTSW 15 102,130,618 (GRCm39) unclassified probably benign
R1033:Itgb7 UTSW 15 102,131,989 (GRCm39) missense probably damaging 1.00
R1627:Itgb7 UTSW 15 102,131,911 (GRCm39) missense probably damaging 0.97
R1999:Itgb7 UTSW 15 102,130,553 (GRCm39) missense probably damaging 1.00
R2150:Itgb7 UTSW 15 102,130,553 (GRCm39) missense probably damaging 1.00
R2331:Itgb7 UTSW 15 102,131,983 (GRCm39) missense probably damaging 1.00
R3747:Itgb7 UTSW 15 102,131,212 (GRCm39) missense probably damaging 1.00
R4758:Itgb7 UTSW 15 102,124,642 (GRCm39) missense probably benign 0.07
R4779:Itgb7 UTSW 15 102,132,848 (GRCm39) missense possibly damaging 0.54
R5134:Itgb7 UTSW 15 102,125,842 (GRCm39) missense probably damaging 1.00
R5158:Itgb7 UTSW 15 102,125,464 (GRCm39) missense probably benign 0.05
R5323:Itgb7 UTSW 15 102,140,059 (GRCm39) intron probably benign
R5416:Itgb7 UTSW 15 102,125,744 (GRCm39) missense probably benign 0.00
R5652:Itgb7 UTSW 15 102,124,638 (GRCm39) missense possibly damaging 0.48
R6089:Itgb7 UTSW 15 102,125,721 (GRCm39) missense probably benign 0.00
R6144:Itgb7 UTSW 15 102,131,917 (GRCm39) missense probably benign 0.45
R6384:Itgb7 UTSW 15 102,132,886 (GRCm39) missense probably benign 0.04
R6475:Itgb7 UTSW 15 102,124,701 (GRCm39) missense probably benign 0.12
R6754:Itgb7 UTSW 15 102,124,595 (GRCm39) makesense probably null
R6857:Itgb7 UTSW 15 102,131,900 (GRCm39) missense probably damaging 1.00
R7394:Itgb7 UTSW 15 102,127,689 (GRCm39) missense probably damaging 1.00
R7747:Itgb7 UTSW 15 102,125,039 (GRCm39) missense possibly damaging 0.88
R8014:Itgb7 UTSW 15 102,131,087 (GRCm39) missense probably damaging 1.00
R8446:Itgb7 UTSW 15 102,127,043 (GRCm39) missense probably damaging 1.00
R8523:Itgb7 UTSW 15 102,124,957 (GRCm39) missense probably damaging 0.99
R9051:Itgb7 UTSW 15 102,126,359 (GRCm39) missense possibly damaging 0.88
R9074:Itgb7 UTSW 15 102,132,797 (GRCm39) missense
R9105:Itgb7 UTSW 15 102,135,904 (GRCm39) missense probably damaging 1.00
R9369:Itgb7 UTSW 15 102,131,821 (GRCm39) missense probably damaging 1.00
R9378:Itgb7 UTSW 15 102,135,831 (GRCm39) critical splice donor site probably null
R9467:Itgb7 UTSW 15 102,131,989 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AAGCTTTGGGGTATGACATTCAA -3'
(R):5'- TGTTTGAGCGGTCAGTGAAT -3'

Sequencing Primer
(F):5'- GGGGTATGACATTCAAGTAGATTCC -3'
(R):5'- AGCGGTCAGTGAATTGTGTG -3'
Posted On 2021-08-31