Mutagenetix > Incidental Mutation

Incidental Mutation 'R8966:Hgd'

682764

Institutional Source

Beutler Lab

Gene Symbol

Hgd

Ensembl Gene

ENSMUSG00000022821

Gene Name

homogentisate 1, 2-dioxygenase

Synonyms

MMRRC Submission

068800-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8966 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

37400515-37452382 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 37431532 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 113 (V113E)

Ref Sequence

ENSEMBL: ENSMUSP00000125492 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000159787] [ENSMUST00000160847]

AlphaFold

O09173

Predicted Effect

probably damaging
Transcript: ENSMUST00000159787
AA Change: V72E

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

Predicted Effect

probably damaging
Transcript: ENSMUST00000160847
AA Change: V113E

PolyPhen 2 Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000125492
Gene: ENSMUSG00000022821
AA Change: V113E

Domain	Start	End	E-Value	Type
Pfam:HgmA	5	434	2e-225	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the enzyme homogentisate 1,2 dioxygenase. This enzyme is involved in the catabolism of the amino acids tyrosine and phenylalanine. Mutations in this gene are the cause of the autosomal recessive metabolism disorder alkaptonuria.[provided by RefSeq, May 2010]
PHENOTYPE: Mutations in this gene result in high levels of urinary homogentisic acid. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930444P10Rik	A	T	1: 16,151,062 (GRCm39)	M40K	possibly damaging	Het
Aak1	A	C	6: 86,964,234 (GRCm39)	N945T	unknown	Het
Abca13	C	G	11: 9,578,588 (GRCm39)	D4863E	probably damaging	Het
Abca8a	C	T	11: 109,962,245 (GRCm39)		probably null	Het
Alppl2	T	A	1: 87,015,210 (GRCm39)	N413I	probably damaging	Het
Asb13	T	A	13: 3,692,093 (GRCm39)	H24Q	probably damaging	Het
Atg9b	A	G	5: 24,596,200 (GRCm39)		probably null	Het
Atp2b4	T	A	1: 133,666,317 (GRCm39)	H245L	probably benign	Het
B3galt2	A	C	1: 143,521,883 (GRCm39)	R6S	probably damaging	Het
B4galnt2	T	C	11: 95,781,811 (GRCm39)	H118R	probably damaging	Het
Ccdc121rt2	T	A	5: 112,598,103 (GRCm39)	W217R	probably damaging	Het
Clca3b	A	G	3: 144,544,872 (GRCm39)	S372P	probably benign	Het
Cnn1	T	C	9: 22,010,716 (GRCm39)		probably null	Het
Cpne6	C	T	14: 55,750,060 (GRCm39)	R64C	probably damaging	Het
Csmd1	T	A	8: 16,250,059 (GRCm39)	H973L	probably damaging	Het
Dennd5b	A	T	6: 148,901,474 (GRCm39)	H1137Q	probably damaging	Het
Dnah3	G	T	7: 119,549,881 (GRCm39)	Y500*	probably null	Het
Dnajc19	A	G	3: 34,132,893 (GRCm39)	V104A	unknown	Het
Eea1	G	A	10: 95,832,901 (GRCm39)	E249K	probably damaging	Het
Eif1ad19	G	T	12: 87,740,273 (GRCm39)	Y95*	probably null	Het
Fancc	T	C	13: 63,495,285 (GRCm39)	Q213R	probably benign	Het
Gabrr1	A	G	4: 33,152,411 (GRCm39)		probably null	Het
Ints7	T	C	1: 191,351,717 (GRCm39)	S809P	probably benign	Het
Lrrcc1	T	C	3: 14,602,359 (GRCm39)	C151R	probably damaging	Het
Marveld3	T	C	8: 110,675,019 (GRCm39)	S266G	possibly damaging	Het
Mdn1	C	T	4: 32,672,837 (GRCm39)	Q486*	probably null	Het
Mstn	G	T	1: 53,105,641 (GRCm39)	V328L	probably benign	Het
Ndc80	C	A	17: 71,815,573 (GRCm39)	G404V	probably benign	Het
Nelfb	T	C	2: 25,090,751 (GRCm39)	R557G	probably damaging	Het
Nol10	T	G	12: 17,419,507 (GRCm39)	V266G	possibly damaging	Het
Optc	C	A	1: 133,828,872 (GRCm39)	A245S	probably damaging	Het
Or51a43	A	G	7: 103,718,139 (GRCm39)	L33P	probably damaging	Het
Or52ae7	A	T	7: 103,119,524 (GRCm39)	I93F	probably benign	Het
Or5b111	A	T	19: 13,291,196 (GRCm39)	F151Y	probably damaging	Het
Or6c75	A	T	10: 129,336,951 (GRCm39)	Y58F	probably damaging	Het
Or8i2	T	A	2: 86,852,879 (GRCm39)	E3V	possibly damaging	Het
Pcdhb11	A	G	18: 37,556,037 (GRCm39)	T456A	possibly damaging	Het
Pkd1	A	G	17: 24,794,751 (GRCm39)	E2146G	possibly damaging	Het
Pkdrej	A	T	15: 85,702,012 (GRCm39)	I1308N	probably damaging	Het
Plekha3	A	T	2: 76,523,006 (GRCm39)	I225F	probably benign	Het
Ppp1r3c	A	T	19: 36,711,736 (GRCm39)	D11E	probably benign	Het
Pprc1	A	G	19: 46,054,118 (GRCm39)	D1155G	unknown	Het
Prcc	T	C	3: 87,792,232 (GRCm39)	K140E	probably damaging	Het
Pth1r	A	T	9: 110,554,229 (GRCm39)	V334D	possibly damaging	Het
Rab3d	G	A	9: 21,826,060 (GRCm39)	T118M	probably damaging	Het
Ric8a	A	G	7: 140,438,379 (GRCm39)	E206G	probably benign	Het
Rps17	C	A	7: 80,994,660 (GRCm39)	V34L	probably benign	Het
Serpinb13	T	C	1: 106,928,165 (GRCm39)	S262P	probably damaging	Het
Serpinb6b	T	A	13: 33,162,035 (GRCm39)	L278Q	probably damaging	Het
Slc1a3	C	T	15: 8,680,332 (GRCm39)		probably null	Het
Slc27a5	C	A	7: 12,725,090 (GRCm39)	R452S	probably benign	Het
Slc45a2	T	A	15: 11,001,122 (GRCm39)	W74R	probably damaging	Het
Slc4a2	A	G	5: 24,635,092 (GRCm39)	T175A	probably benign	Het
Sos1	C	A	17: 80,705,879 (GRCm39)	G1231C	possibly damaging	Het
Spata32	T	C	11: 103,100,143 (GRCm39)	T121A	probably damaging	Het
Srd5a3	T	A	5: 76,301,437 (GRCm39)	F222Y	probably benign	Het
Stag3	T	C	5: 138,289,666 (GRCm39)	Y279H	probably damaging	Het
Stk31	T	C	6: 49,423,134 (GRCm39)	I795T	possibly damaging	Het
Syne2	T	C	12: 76,146,197 (GRCm39)	I1665T	probably damaging	Het
Tas2r118	A	G	6: 23,970,020 (GRCm39)	Y14H	probably damaging	Het
Tmc7	G	A	7: 118,160,228 (GRCm39)	P203L	probably benign	Het
Tnik	T	G	3: 28,587,044 (GRCm39)	M105R	unknown	Het
Trrap	A	G	5: 144,740,162 (GRCm39)	T1195A	probably damaging	Het
Usf1	T	A	1: 171,245,101 (GRCm39)		probably null	Het
Usp53	G	A	3: 122,754,981 (GRCm39)	T158I	probably damaging	Het
Uty	T	C	Y: 1,099,748 (GRCm39)	E1149G	possibly damaging	Het
Vmn2r23	G	A	6: 123,719,079 (GRCm39)	V811M	possibly damaging	Het
Zfp663	T	A	2: 165,194,958 (GRCm39)	K420N	probably damaging	Het
Zfp703	T	C	8: 27,468,302 (GRCm39)	S91P	possibly damaging	Het
Zpld2	T	C	4: 133,929,712 (GRCm39)	T198A	probably damaging	Het
Zscan4-ps1	A	C	7: 10,800,250 (GRCm39)	I213S	probably benign	Het

Other mutations in Hgd

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00777:Hgd	APN	16	37,433,611 (GRCm39)	missense	probably damaging	1.00
IGL00851:Hgd	APN	16	37,452,057 (GRCm39)	missense	probably damaging	0.98
IGL01339:Hgd	APN	16	37,452,092 (GRCm39)	missense	possibly damaging	0.72
IGL01627:Hgd	APN	16	37,442,287 (GRCm39)	missense	probably damaging	0.96
IGL02565:Hgd	APN	16	37,435,749 (GRCm39)	missense	possibly damaging	0.88
IGL03098:Hgd	UTSW	16	37,436,607 (GRCm39)	missense	probably benign	0.44
R0346:Hgd	UTSW	16	37,409,136 (GRCm39)	splice site	probably benign
R0360:Hgd	UTSW	16	37,431,546 (GRCm39)	splice site	probably benign
R0426:Hgd	UTSW	16	37,409,047 (GRCm39)	splice site	probably benign
R0799:Hgd	UTSW	16	37,448,971 (GRCm39)	splice site	probably benign
R1178:Hgd	UTSW	16	37,435,756 (GRCm39)	missense	possibly damaging	0.95
R2921:Hgd	UTSW	16	37,439,330 (GRCm39)	missense	probably damaging	1.00
R2922:Hgd	UTSW	16	37,439,330 (GRCm39)	missense	probably damaging	1.00
R4791:Hgd	UTSW	16	37,452,187 (GRCm39)	makesense	probably null
R4859:Hgd	UTSW	16	37,409,111 (GRCm39)	missense	probably damaging	1.00
R5289:Hgd	UTSW	16	37,448,913 (GRCm39)	missense	possibly damaging	0.94
R5368:Hgd	UTSW	16	37,410,113 (GRCm39)	missense	probably benign	0.33
R5779:Hgd	UTSW	16	37,413,733 (GRCm39)	missense	probably benign	0.01
R6140:Hgd	UTSW	16	37,410,075 (GRCm39)	missense	probably benign	0.04
R6160:Hgd	UTSW	16	37,433,660 (GRCm39)	missense	probably damaging	1.00
R6636:Hgd	UTSW	16	37,435,736 (GRCm39)	missense	possibly damaging	0.75
R7196:Hgd	UTSW	16	37,409,078 (GRCm39)	missense	probably benign	0.03
R7450:Hgd	UTSW	16	37,444,686 (GRCm39)	missense	possibly damaging	0.88
R7580:Hgd	UTSW	16	37,439,241 (GRCm39)	missense	possibly damaging	0.67
R7720:Hgd	UTSW	16	37,413,797 (GRCm39)	missense	probably benign
R9486:Hgd	UTSW	16	37,413,811 (GRCm39)	missense	probably benign	0.34
Z1177:Hgd	UTSW	16	37,410,081 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATGGCCAGAACCTCACAGAG -3'
(R):5'- GGGAATTTACCCTCATTGGCC -3'

Sequencing Primer
(F):5'- TCACAGAGAGAGCAGTTGTCTGTC -3'
(R):5'- TGTCAGGAGCCATATGGTGCC -3'

Posted On

2021-10-11