Mutagenetix > Incidental Mutation

Incidental Mutation 'R8969:Ptcd3'

682932

Institutional Source

Beutler Lab

Gene Symbol

Ptcd3

Ensembl Gene

ENSMUSG00000063884

Gene Name

pentatricopeptide repeat domain 3

Synonyms

2610034F17Rik, 2810422B04Rik

MMRRC Submission

068803-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R8969 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

71857622-71885734 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 71880431 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Methionine at position 97 (I97M)

Ref Sequence

ENSEMBL: ENSMUSP00000080743 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000082094] [ENSMUST00000206879]

AlphaFold

Q14C51

Predicted Effect

probably benign
Transcript: ENSMUST00000082094
AA Change: I97M

PolyPhen 2 Score 0.444 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000080743
Gene: ENSMUSG00000063884
AA Change: I97M

Domain	Start	End	E-Value	Type
low complexity region	2	8	N/A	INTRINSIC
low complexity region	216	227	N/A	INTRINSIC
Pfam:PPR_2	253	300	1.4e-10	PFAM
Pfam:PPR_3	331	366	2.1e-4	PFAM
low complexity region	671	684	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000206284

Predicted Effect

probably benign
Transcript: ENSMUST00000206879
AA Change: I97M

PolyPhen 2 Score 0.128 (Sensitivity: 0.93; Specificity: 0.86)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.5%

Validation Efficiency

100% (77/77)

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	T	A	11: 9,227,944 (GRCm39)	N662K	probably benign	Het
Acp7	G	A	7: 28,307,382 (GRCm39)	R492W	probably damaging	Het
Adam33	C	T	2: 130,894,994 (GRCm39)	G688D	probably damaging	Het
Ak3	T	G	19: 29,025,094 (GRCm39)	M46L	probably benign	Het
Aldh1l1	A	G	6: 90,547,790 (GRCm39)	T417A	probably benign	Het
Ambp	C	T	4: 63,072,328 (GRCm39)		probably benign	Het
Arhgef11	T	C	3: 87,632,949 (GRCm39)	S687P	probably damaging	Het
Ash1l	T	C	3: 88,873,598 (GRCm39)	M127T	possibly damaging	Het
Atg9b	C	T	5: 24,592,832 (GRCm39)	A524T	probably benign	Het
Btbd10	A	T	7: 112,925,162 (GRCm39)	S277T	probably damaging	Het
Ccdc167	T	C	17: 29,924,553 (GRCm39)	D16G	probably damaging	Het
Cdh12	A	G	15: 21,492,739 (GRCm39)	T253A	probably damaging	Het
Cfap206	A	T	4: 34,692,522 (GRCm39)	D501E	probably benign	Het
Chrnb2	A	G	3: 89,664,532 (GRCm39)	F461L	probably damaging	Het
Clic1	T	C	17: 35,274,386 (GRCm39)		probably null	Het
Cmah	A	G	13: 24,606,636 (GRCm39)	Y89C	probably damaging	Het
Crkl	A	G	16: 17,286,918 (GRCm39)	E158G	probably damaging	Het
Cyp3a59	A	T	5: 146,049,630 (GRCm39)	E486V	probably benign	Het
D16Ertd472e	T	G	16: 78,344,682 (GRCm39)	Y142S	probably damaging	Het
Decr2	T	A	17: 26,306,355 (GRCm39)	M94L	probably benign	Het
Dspp	A	T	5: 104,325,640 (GRCm39)	S668C	unknown	Het
Dync2h1	T	C	9: 7,130,723 (GRCm39)	R1708G	probably damaging	Het
Eno3	T	A	11: 70,551,691 (GRCm39)	I217N	possibly damaging	Het
Fcho2	A	T	13: 98,891,604 (GRCm39)	L386*	probably null	Het
Gm5114	C	A	7: 39,058,732 (GRCm39)	V296F	probably damaging	Het
Hc	A	G	2: 34,909,475 (GRCm39)		probably null	Het
Helz2	A	G	2: 180,879,581 (GRCm39)	V679A	probably benign	Het
Ifnar2	T	C	16: 91,201,060 (GRCm39)	F434L	probably benign	Het
Isl1	A	G	13: 116,439,857 (GRCm39)	S164P	possibly damaging	Het
Jup	C	T	11: 100,270,391 (GRCm39)	C372Y	probably damaging	Het
Kat2b	T	A	17: 53,967,116 (GRCm39)	Y621*	probably null	Het
Kif2b	T	C	11: 91,468,019 (GRCm39)	H88R	probably benign	Het
Kit	G	A	5: 75,799,722 (GRCm39)	V485I		Het
Klhl36	T	C	8: 120,596,887 (GRCm39)	L196P	probably damaging	Het
Klk1b27	T	A	7: 43,703,932 (GRCm39)	I25K	probably damaging	Het
Kmt2c	T	A	5: 25,519,387 (GRCm39)	Q2241L	possibly damaging	Het
Krt10	T	A	11: 99,278,434 (GRCm39)	N242Y	probably damaging	Het
Krt36	T	A	11: 99,993,129 (GRCm39)	I449F	probably damaging	Het
Med27	G	T	2: 29,236,875 (GRCm39)	V7F	possibly damaging	Het
Mettl25b	G	A	3: 87,837,282 (GRCm39)		probably benign	Het
Mxd1	C	T	6: 86,628,466 (GRCm39)	V145M	probably benign	Het
Mylip	T	A	13: 45,544,820 (GRCm39)	F81L	probably damaging	Het
Nceh1	T	A	3: 27,276,885 (GRCm39)	F69L	probably null	Het
Ndufs3	A	T	2: 90,732,773 (GRCm39)	N104K	probably damaging	Het
Nfxl1	A	C	5: 72,716,473 (GRCm39)	V46G	unknown	Het
Or51a39	T	C	7: 102,363,558 (GRCm39)	T21A	probably benign	Het
Or51f1e	T	G	7: 102,747,251 (GRCm39)	I101S	probably damaging	Het
Or5as1	T	A	2: 86,980,928 (GRCm39)	M26L	probably benign	Het
Or5m10b	A	G	2: 85,699,832 (GRCm39)	N299D	probably benign	Het
Palld	T	A	8: 62,137,883 (GRCm39)	H624L	probably damaging	Het
Pcbp2	T	G	15: 102,399,214 (GRCm39)	L343R	probably damaging	Het
Pclo	T	A	5: 14,572,208 (GRCm39)	I531N	unknown	Het
Phip	T	C	9: 82,809,017 (GRCm39)		probably benign	Het
Phldb2	A	T	16: 45,592,496 (GRCm39)		probably null	Het
Ppp2r5e	G	T	12: 75,500,492 (GRCm39)	T467N	possibly damaging	Het
Ptpn21	T	A	12: 98,655,284 (GRCm39)	Q561L	probably benign	Het
Rnf38	A	T	4: 44,149,079 (GRCm39)	H121Q	possibly damaging	Het
Sec1	A	G	7: 45,328,897 (GRCm39)	F50S	possibly damaging	Het
Sec62	A	G	3: 30,873,024 (GRCm39)	E369G	unknown	Het
Serpinb2	A	T	1: 107,452,390 (GRCm39)	I323F	probably damaging	Het
Sh3rf1	A	C	8: 61,837,860 (GRCm39)	T802P	probably benign	Het
Srd5a3	A	G	5: 76,301,493 (GRCm39)	R241G	probably benign	Het
Suox	T	C	10: 128,507,542 (GRCm39)	N162S	probably benign	Het
Tenm2	C	T	11: 35,942,688 (GRCm39)	C1327Y	probably damaging	Het
Terf2ip	A	G	8: 112,738,370 (GRCm39)	D86G	probably damaging	Het
Tmc1	G	A	19: 20,793,593 (GRCm39)	R523C	probably damaging	Het
Tmprss11e	T	A	5: 86,861,758 (GRCm39)	I263L	possibly damaging	Het
Tmtc4	T	C	14: 123,179,224 (GRCm39)		probably benign	Het
Tnfrsf22	T	A	7: 143,192,173 (GRCm39)	N171I	unknown	Het
Trpm3	A	G	19: 22,903,308 (GRCm39)	S1035G	probably damaging	Het
U2af1	C	T	17: 31,867,854 (GRCm39)	V72M	possibly damaging	Het
Uimc1	A	G	13: 55,233,447 (GRCm39)	C70R	possibly damaging	Het
Vmn2r83	A	G	10: 79,313,853 (GRCm39)	T154A	probably benign	Het
Xrn2	T	C	2: 146,871,304 (GRCm39)	I302T	probably damaging	Het
Zbtb6	A	G	2: 37,318,677 (GRCm39)	L417P	probably damaging	Het
Zdhhc14	C	T	17: 5,775,555 (GRCm39)	S269L	probably benign	Het
Zfp735	T	A	11: 73,602,699 (GRCm39)	F548I	possibly damaging	Het
Zfp809	T	C	9: 22,137,130 (GRCm39)		probably null	Het
Zranb3	A	T	1: 127,888,588 (GRCm39)	D832E	possibly damaging	Het

Other mutations in Ptcd3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00767:Ptcd3	APN	6	71,880,432 (GRCm39)	missense	probably damaging	0.96
IGL00903:Ptcd3	APN	6	71,884,828 (GRCm39)	missense	possibly damaging	0.93
IGL01545:Ptcd3	APN	6	71,865,561 (GRCm39)	missense	probably benign	0.01
IGL01924:Ptcd3	APN	6	71,875,411 (GRCm39)	missense	probably damaging	1.00
IGL02675:Ptcd3	APN	6	71,860,426 (GRCm39)	critical splice donor site	probably null
R0732:Ptcd3	UTSW	6	71,858,155 (GRCm39)	unclassified	probably benign
R1374:Ptcd3	UTSW	6	71,885,637 (GRCm39)	nonsense	probably null
R1393:Ptcd3	UTSW	6	71,866,605 (GRCm39)	missense	probably benign	0.00
R1498:Ptcd3	UTSW	6	71,870,479 (GRCm39)	missense	probably damaging	1.00
R1646:Ptcd3	UTSW	6	71,875,379 (GRCm39)	missense	probably benign	0.26
R1712:Ptcd3	UTSW	6	71,885,637 (GRCm39)	nonsense	probably null
R2022:Ptcd3	UTSW	6	71,862,537 (GRCm39)	missense	probably damaging	1.00
R2248:Ptcd3	UTSW	6	71,871,269 (GRCm39)	critical splice donor site	probably null
R2406:Ptcd3	UTSW	6	71,865,631 (GRCm39)	missense	probably damaging	1.00
R3418:Ptcd3	UTSW	6	71,860,470 (GRCm39)	missense	possibly damaging	0.93
R3419:Ptcd3	UTSW	6	71,860,470 (GRCm39)	missense	possibly damaging	0.93
R4677:Ptcd3	UTSW	6	71,870,498 (GRCm39)	missense	probably benign	0.17
R4741:Ptcd3	UTSW	6	71,879,933 (GRCm39)	missense	probably damaging	1.00
R4752:Ptcd3	UTSW	6	71,878,296 (GRCm39)	missense	probably damaging	0.99
R5441:Ptcd3	UTSW	6	71,858,505 (GRCm39)	missense	possibly damaging	0.62
R5583:Ptcd3	UTSW	6	71,879,920 (GRCm39)	missense	probably damaging	1.00
R5681:Ptcd3	UTSW	6	71,884,643 (GRCm39)	missense	probably damaging	1.00
R6028:Ptcd3	UTSW	6	71,875,392 (GRCm39)	missense	probably damaging	1.00
R6324:Ptcd3	UTSW	6	71,862,311 (GRCm39)	missense	probably benign	0.00
R6537:Ptcd3	UTSW	6	71,874,094 (GRCm39)	splice site	probably null
R6600:Ptcd3	UTSW	6	71,860,530 (GRCm39)	missense	probably damaging	1.00
R6783:Ptcd3	UTSW	6	71,885,627 (GRCm39)	missense	probably benign	0.00
R6810:Ptcd3	UTSW	6	71,862,516 (GRCm39)	missense	probably damaging	0.99
R6860:Ptcd3	UTSW	6	71,874,094 (GRCm39)	splice site	probably null
R6993:Ptcd3	UTSW	6	71,862,299 (GRCm39)	missense	probably damaging	1.00
R7578:Ptcd3	UTSW	6	71,885,691 (GRCm39)	missense	probably benign
R7788:Ptcd3	UTSW	6	71,862,541 (GRCm39)	missense	probably benign	0.00
R7851:Ptcd3	UTSW	6	71,879,843 (GRCm39)	missense	probably damaging	1.00
R7888:Ptcd3	UTSW	6	71,860,431 (GRCm39)	missense	probably damaging	1.00
R7889:Ptcd3	UTSW	6	71,865,592 (GRCm39)	missense	probably damaging	1.00
R7919:Ptcd3	UTSW	6	71,880,438 (GRCm39)	missense	probably damaging	1.00
R8162:Ptcd3	UTSW	6	71,884,798 (GRCm39)	missense	probably benign	0.02
R8351:Ptcd3	UTSW	6	71,885,625 (GRCm39)	missense	probably benign	0.00
R8451:Ptcd3	UTSW	6	71,885,625 (GRCm39)	missense	probably benign	0.00
R8701:Ptcd3	UTSW	6	71,862,495 (GRCm39)	missense	possibly damaging	0.92
R8826:Ptcd3	UTSW	6	71,885,645 (GRCm39)	missense	probably benign	0.01
R8926:Ptcd3	UTSW	6	71,869,464 (GRCm39)	missense	probably damaging	1.00
R9031:Ptcd3	UTSW	6	71,880,458 (GRCm39)	nonsense	probably null
R9046:Ptcd3	UTSW	6	71,870,364 (GRCm39)	critical splice donor site	probably null
R9384:Ptcd3	UTSW	6	71,874,110 (GRCm39)	missense	possibly damaging	0.77
R9668:Ptcd3	UTSW	6	71,871,275 (GRCm39)	missense	possibly damaging	0.93
R9771:Ptcd3	UTSW	6	71,872,903 (GRCm39)	nonsense	probably null
X0024:Ptcd3	UTSW	6	71,878,258 (GRCm39)	missense	probably damaging	1.00
X0065:Ptcd3	UTSW	6	71,884,790 (GRCm39)	missense	probably benign	0.00

Predicted Primers

Posted On

2021-10-11