Incidental Mutation 'R8980:Prss16'
| ID |
683702 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Prss16
|
| Ensembl Gene |
ENSMUSG00000006179 |
| Gene Name |
serine protease 16 (thymus) |
| Synonyms |
TSSP |
| MMRRC Submission |
068813-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R8980 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
13 |
| Chromosomal Location |
22186346-22193911 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to T
at 22187212 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Isoleucine
at position 453
(V453I)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000006341
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000006341]
[ENSMUST00000150547]
|
| AlphaFold |
Q9QXE5 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000006341
AA Change: V453I
PolyPhen 2
Score 0.131 (Sensitivity: 0.93; Specificity: 0.86)
|
| SMART Domains |
Protein: ENSMUSP00000006341
Gene: ENSMUSG00000006179
AA Change: V453I
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
7 |
26 |
N/A |
INTRINSIC |
|
low complexity region
|
40 |
53 |
N/A |
INTRINSIC |
|
Pfam:Peptidase_S28
|
63 |
493 |
1.9e-157 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000150547
AA Change: V113I
PolyPhen 2
Score 0.131 (Sensitivity: 0.93; Specificity: 0.86)
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.6%
- 20x: 98.8%
|
| Validation Efficiency |
100% (37/37) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a serine protease expressed exclusively in the thymus. It is thought to play a role in the alternative antigen presenting pathway used by cortical thymic epithelial cells during the positive selection of T cells. The gene is found in the large histone gene cluster on chromosome 6, near the major histocompatibility complex (MHC) class I region. A second transcript variant has been described, but its full length nature has not been determined. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice are viable with no gross abnormalities and normal T cell development and activation. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcc1 |
G |
C |
16: 14,278,961 (GRCm39) |
M1090I |
probably damaging |
Het |
| Ak7 |
T |
A |
12: 105,747,158 (GRCm39) |
V675E |
probably benign |
Het |
| Ano10 |
T |
A |
9: 122,090,558 (GRCm39) |
I252L |
probably benign |
Het |
| Ano6 |
A |
G |
15: 95,865,563 (GRCm39) |
Y828C |
probably damaging |
Het |
| Aurkaip1 |
T |
G |
4: 155,916,873 (GRCm39) |
S40R |
probably damaging |
Het |
| Bcl2l11 |
T |
A |
2: 128,000,200 (GRCm39) |
I181N |
possibly damaging |
Het |
| Cdh23 |
T |
C |
10: 60,173,625 (GRCm39) |
Y1621C |
probably benign |
Het |
| Cep68 |
A |
T |
11: 20,190,390 (GRCm39) |
N207K |
probably benign |
Het |
| Clock |
T |
C |
5: 76,402,286 (GRCm39) |
I125V |
probably benign |
Het |
| Efcab8 |
G |
C |
2: 153,646,861 (GRCm39) |
V397L |
unknown |
Het |
| Ephb6 |
C |
T |
6: 41,590,293 (GRCm39) |
A15V |
probably benign |
Het |
| Eps15l1 |
A |
T |
8: 73,127,734 (GRCm39) |
H614Q |
probably benign |
Het |
| Gm29106 |
G |
A |
1: 118,127,114 (GRCm39) |
G269R |
possibly damaging |
Het |
| Hexb |
A |
G |
13: 97,330,689 (GRCm39) |
V108A |
probably damaging |
Het |
| Ibtk |
G |
T |
9: 85,614,783 (GRCm39) |
C185* |
probably null |
Het |
| Josd2 |
A |
G |
7: 44,117,702 (GRCm39) |
|
probably benign |
Het |
| Krt76 |
C |
T |
15: 101,800,990 (GRCm39) |
G102D |
unknown |
Het |
| Nrap |
T |
A |
19: 56,343,970 (GRCm39) |
S645C |
probably damaging |
Het |
| Or7g12 |
A |
G |
9: 18,899,423 (GRCm39) |
I46M |
probably damaging |
Het |
| Pramel38 |
T |
C |
5: 94,366,035 (GRCm39) |
L51P |
probably damaging |
Het |
| Prl2c5 |
T |
A |
13: 13,360,470 (GRCm39) |
F46I |
probably benign |
Het |
| Psd |
A |
G |
19: 46,310,657 (GRCm39) |
L464P |
possibly damaging |
Het |
| Ptprb |
T |
C |
10: 116,119,526 (GRCm39) |
L220P |
probably benign |
Het |
| Rab7 |
A |
T |
6: 87,977,502 (GRCm39) |
V180E |
probably benign |
Het |
| Rc3h1 |
A |
G |
1: 160,782,595 (GRCm39) |
I691M |
probably benign |
Het |
| Rnf150 |
A |
G |
8: 83,717,087 (GRCm39) |
N198S |
probably benign |
Het |
| Sema4g |
A |
T |
19: 44,981,583 (GRCm39) |
M100L |
probably benign |
Het |
| Slc25a21 |
A |
G |
12: 56,816,949 (GRCm39) |
S106P |
probably benign |
Het |
| Slc27a5 |
C |
A |
7: 12,725,090 (GRCm39) |
R452S |
probably benign |
Het |
| St8sia5 |
A |
G |
18: 77,333,761 (GRCm39) |
|
probably null |
Het |
| Themis3 |
A |
T |
17: 66,862,536 (GRCm39) |
I474N |
probably damaging |
Het |
| Uckl1 |
C |
A |
2: 181,216,157 (GRCm39) |
|
probably benign |
Het |
| Vmn1r177 |
A |
G |
7: 23,565,144 (GRCm39) |
V244A |
probably damaging |
Het |
| Vmn2r1 |
T |
A |
3: 64,010,501 (GRCm39) |
Y580N |
|
Het |
| Zfp1006 |
G |
A |
8: 129,945,680 (GRCm39) |
P382S |
probably damaging |
Het |
| Zfp11 |
T |
A |
5: 129,737,843 (GRCm39) |
M1L |
probably benign |
Het |
| Zfp462 |
TACCACCACCACCACCACCACCA |
TACCACCACCACCACCACCA |
4: 55,009,681 (GRCm39) |
|
probably benign |
Het |
| Zfp521 |
C |
A |
18: 13,979,137 (GRCm39) |
L425F |
probably damaging |
Het |
| Zfp827 |
T |
C |
8: 79,803,092 (GRCm39) |
S555P |
probably benign |
Het |
|
| Other mutations in Prss16 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02025:Prss16
|
APN |
13 |
22,187,191 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02272:Prss16
|
APN |
13 |
22,187,205 (GRCm39) |
missense |
probably damaging |
0.96 |
|
IGL02383:Prss16
|
APN |
13 |
22,193,697 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02892:Prss16
|
APN |
13 |
22,187,220 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL03325:Prss16
|
APN |
13 |
22,187,417 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
BB001:Prss16
|
UTSW |
13 |
22,192,834 (GRCm39) |
missense |
probably damaging |
0.99 |
|
BB011:Prss16
|
UTSW |
13 |
22,192,834 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0645:Prss16
|
UTSW |
13 |
22,193,546 (GRCm39) |
unclassified |
probably benign |
|
|
R0970:Prss16
|
UTSW |
13 |
22,189,287 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1146:Prss16
|
UTSW |
13 |
22,191,138 (GRCm39) |
unclassified |
probably benign |
|
|
R1292:Prss16
|
UTSW |
13 |
22,193,691 (GRCm39) |
nonsense |
probably null |
|
|
R1371:Prss16
|
UTSW |
13 |
22,192,856 (GRCm39) |
unclassified |
probably benign |
|
|
R1525:Prss16
|
UTSW |
13 |
22,193,613 (GRCm39) |
missense |
possibly damaging |
0.50 |
|
R1624:Prss16
|
UTSW |
13 |
22,187,483 (GRCm39) |
missense |
probably benign |
0.31 |
|
R2233:Prss16
|
UTSW |
13 |
22,193,579 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R5147:Prss16
|
UTSW |
13 |
22,190,264 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R5670:Prss16
|
UTSW |
13 |
22,187,221 (GRCm39) |
missense |
possibly damaging |
0.74 |
|
R6440:Prss16
|
UTSW |
13 |
22,187,330 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6668:Prss16
|
UTSW |
13 |
22,190,918 (GRCm39) |
missense |
probably null |
0.01 |
|
R6791:Prss16
|
UTSW |
13 |
22,190,237 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7278:Prss16
|
UTSW |
13 |
22,187,317 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7924:Prss16
|
UTSW |
13 |
22,192,834 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8865:Prss16
|
UTSW |
13 |
22,187,175 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
R9139:Prss16
|
UTSW |
13 |
22,192,513 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9211:Prss16
|
UTSW |
13 |
22,192,754 (GRCm39) |
missense |
probably benign |
0.19 |
|
R9276:Prss16
|
UTSW |
13 |
22,190,175 (GRCm39) |
start gained |
probably benign |
|
|
R9318:Prss16
|
UTSW |
13 |
22,191,108 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R9748:Prss16
|
UTSW |
13 |
22,192,504 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
Z1176:Prss16
|
UTSW |
13 |
22,190,570 (GRCm39) |
start gained |
probably benign |
|
|
Z1176:Prss16
|
UTSW |
13 |
22,190,224 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- AGATGGAGAACATTCTGGAGTC -3'
(R):5'- AGTGTTTGGCCTCTCACCTG -3'
Sequencing Primer
(F):5'- CAGCACCAGTAAAAGATGAGTTATAC -3'
(R):5'- CATCTGTTGCCCAGGCTGTG -3'
|
| Posted On |
2021-10-11 |
Incidental Mutation