Mutagenetix > Incidental Mutation

Incidental Mutation 'R9007:Lars2'

685367

Institutional Source

Beutler Lab

Gene Symbol

Lars2

Ensembl Gene

ENSMUSG00000035202

Gene Name

leucyl-tRNA synthetase, mitochondrial

Synonyms

MMRRC Submission

068837-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R9007 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

123196001-123291731 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 123260980 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 384 (R384*)

Ref Sequence

ENSEMBL: ENSMUSP00000036710 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038863] [ENSMUST00000217116]

AlphaFold

Q8VDC0

Predicted Effect

probably null
Transcript: ENSMUST00000038863
AA Change: R384*

SMART Domains

Protein: ENSMUSP00000036710
Gene: ENSMUSG00000035202
AA Change: R384*

Domain	Start	End	E-Value	Type
Pfam:tRNA-synt_1	57	223	7.6e-24	PFAM
Pfam:tRNA-synt_1g	83	239	9.3e-20	PFAM
Pfam:tRNA-synt_1_2	269	430	1.1e-8	PFAM
Pfam:tRNA-synt_1	434	609	5.6e-8	PFAM
Pfam:tRNA-synt_1g	589	682	1.2e-6	PFAM
Pfam:tRNA-synt_1	633	678	1.6e-7	PFAM
Pfam:Anticodon_1	724	867	9.2e-13	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000217116
AA Change: R384*

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (60/60)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a class 1 aminoacyl-tRNA synthetase, mitochondrial leucyl-tRNA synthetase. Each of the twenty aminoacyl-tRNA synthetases catalyzes the aminoacylation of a specific tRNA or tRNA isoaccepting family with the cognate amino acid. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700010I14Rik	T	A	17: 9,226,935 (GRCm39)	C497S	probably benign	Het
4930453N24Rik	A	T	16: 64,589,377 (GRCm39)	Y92*	probably null	Het
Adam3	A	G	8: 25,205,127 (GRCm39)	V117A	probably benign	Het
Amer2	G	C	14: 60,617,376 (GRCm39)	D524H	probably damaging	Het
Armh4	T	A	14: 50,011,695 (GRCm39)	D4V	probably damaging	Het
Atp6v0a4	T	C	6: 38,029,988 (GRCm39)	K692R	probably benign	Het
Atp8b1	A	G	18: 64,684,931 (GRCm39)	V730A	probably benign	Het
Bdh2	T	C	3: 134,991,309 (GRCm39)		probably benign	Het
Ccnd3	T	A	17: 47,905,332 (GRCm39)		probably null	Het
Chrm4	T	C	2: 91,758,075 (GRCm39)	V161A	possibly damaging	Het
Csmd3	T	C	15: 47,751,892 (GRCm39)		probably benign	Het
D430041D05Rik	A	G	2: 104,087,930 (GRCm39)	S349P	probably benign	Het
Ddx55	A	G	5: 124,697,370 (GRCm39)	N244S	probably damaging	Het
Dock1	A	G	7: 134,500,825 (GRCm39)		probably benign	Het
Dppa3	T	C	6: 122,605,724 (GRCm39)	S93P	probably damaging	Het
Echdc1	T	C	10: 29,220,426 (GRCm39)	I217T	probably damaging	Het
Fpr-rs4	T	A	17: 18,242,416 (GRCm39)	L141Q	probably damaging	Het
Galnt15	T	C	14: 31,771,935 (GRCm39)	F451L	probably damaging	Het
Galnt9	G	A	5: 110,692,665 (GRCm39)	R33H	probably benign	Het
Iah1	G	A	12: 21,367,402 (GRCm39)	G36D	probably damaging	Het
Jakmip1	A	G	5: 37,332,857 (GRCm39)	D1179G	probably benign	Het
Kcnh1	A	G	1: 192,188,055 (GRCm39)	T866A	probably benign	Het
Kcnq4	T	A	4: 120,555,150 (GRCm39)	I678F	probably benign	Het
Lman2	T	C	13: 55,500,773 (GRCm39)	D142G	probably damaging	Het
Lrp1b	T	C	2: 40,587,564 (GRCm39)	D3897G		Het
Lrrn1	T	A	6: 107,544,820 (GRCm39)	I206N	probably damaging	Het
Mapkbp1	T	A	2: 119,850,143 (GRCm39)	L802H	probably damaging	Het
Meaf6	T	C	4: 125,001,450 (GRCm39)		probably benign	Het
Mier2	G	A	10: 79,384,274 (GRCm39)	R166W	probably damaging	Het
Mis18bp1	G	A	12: 65,180,616 (GRCm39)	S955L	probably benign	Het
Mocs1	T	A	17: 49,756,819 (GRCm39)	M267K	probably damaging	Het
Mroh3	T	A	1: 136,128,110 (GRCm39)	Y263F	probably damaging	Het
Ndufs1	A	T	1: 63,198,878 (GRCm39)		probably benign	Het
Nuak1	T	C	10: 84,210,492 (GRCm39)	Y532C	probably damaging	Het
Or51b6	A	G	7: 103,556,165 (GRCm39)	H170R		Het
Or6c205	A	T	10: 129,086,669 (GRCm39)	T89S	possibly damaging	Het
Ost4	A	G	5: 31,064,866 (GRCm39)	V5A	possibly damaging	Het
P2rx1	T	A	11: 72,900,059 (GRCm39)	C159S	probably damaging	Het
Paqr8	T	C	1: 21,005,614 (GRCm39)	L256P	possibly damaging	Het
Pgls	T	A	8: 72,048,689 (GRCm39)		probably benign	Het
Pkd2l1	T	C	19: 44,140,864 (GRCm39)	E566G	possibly damaging	Het
Plau	A	T	14: 20,889,613 (GRCm39)	H226L	probably damaging	Het
Rps18-ps5	A	G	13: 28,441,872 (GRCm39)	N85S	probably damaging	Het
Rraga	T	C	4: 86,494,675 (GRCm39)	S174P	probably damaging	Het
Sacs	T	A	14: 61,445,185 (GRCm39)	D2410E	probably benign	Het
Sgms1	A	T	19: 32,137,227 (GRCm39)	M113K	probably benign	Het
Skint6	C	A	4: 113,095,347 (GRCm39)	G104V	probably damaging	Het
Spata31f1e	C	T	4: 42,792,546 (GRCm39)	G529S	probably benign	Het
Sqor	T	A	2: 122,649,876 (GRCm39)	Y373*	probably null	Het
Stra6l	T	A	4: 45,864,910 (GRCm39)	S79T	possibly damaging	Het
Svep1	T	C	4: 58,091,915 (GRCm39)	I1573M	possibly damaging	Het
Syne2	A	G	12: 76,146,224 (GRCm39)	D1674G	possibly damaging	Het
Tex26	C	A	5: 149,376,884 (GRCm39)	T91N	probably damaging	Het
Tigd2	T	G	6: 59,187,887 (GRCm39)	S251R	probably damaging	Het
Tmco1	C	T	1: 167,136,132 (GRCm39)		probably benign	Het
Tnks1bp1	T	A	2: 84,901,048 (GRCm39)	L1585Q	probably damaging	Het
Trmt10c	A	G	16: 55,855,542 (GRCm39)	V31A	probably benign	Het
Ttc41	T	C	10: 86,569,625 (GRCm39)	S668P	probably damaging	Het
Uggt2	A	T	14: 119,326,724 (GRCm39)	D162E	probably damaging	Het
Vmn1r125	G	C	7: 21,006,503 (GRCm39)	V134L	probably benign	Het
Vmn1r225	T	A	17: 20,723,449 (GRCm39)	F297I	probably damaging	Het
Vps13c	A	G	9: 67,845,006 (GRCm39)	D2030G	probably benign	Het

Other mutations in Lars2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01743:Lars2	APN	9	123,282,313 (GRCm39)	missense	probably damaging	0.98
IGL01993:Lars2	APN	9	123,224,008 (GRCm39)	splice site	probably benign
IGL02155:Lars2	APN	9	123,284,047 (GRCm39)	missense	probably damaging	0.99
IGL02941:Lars2	APN	9	123,288,650 (GRCm39)	missense	probably damaging	0.97
IGL03090:Lars2	APN	9	123,285,025 (GRCm39)	missense	probably damaging	1.00
IGL03271:Lars2	APN	9	123,288,549 (GRCm39)	splice site	probably null
IGL03386:Lars2	APN	9	123,282,455 (GRCm39)	nonsense	probably null
IGL03410:Lars2	APN	9	123,247,841 (GRCm39)	missense	possibly damaging	0.87
ulrich	UTSW	9	123,247,758 (GRCm39)	missense	probably damaging	0.99
K3955:Lars2	UTSW	9	123,206,842 (GRCm39)	missense	probably damaging	1.00
P0038:Lars2	UTSW	9	123,206,842 (GRCm39)	missense	probably damaging	1.00
R0276:Lars2	UTSW	9	123,267,186 (GRCm39)	splice site	probably benign
R1671:Lars2	UTSW	9	123,247,344 (GRCm39)	missense	probably benign	0.02
R1829:Lars2	UTSW	9	123,260,982 (GRCm39)	missense	probably benign	0.00
R2219:Lars2	UTSW	9	123,247,845 (GRCm39)	missense	probably damaging	0.98
R2220:Lars2	UTSW	9	123,247,845 (GRCm39)	missense	probably damaging	0.98
R4610:Lars2	UTSW	9	123,247,758 (GRCm39)	missense	probably damaging	0.99
R5027:Lars2	UTSW	9	123,270,560 (GRCm39)	missense	probably benign	0.38
R5195:Lars2	UTSW	9	123,282,375 (GRCm39)	missense	probably damaging	0.97
R5597:Lars2	UTSW	9	123,284,047 (GRCm39)	missense	probably damaging	0.99
R5756:Lars2	UTSW	9	123,267,264 (GRCm39)	missense	probably damaging	1.00
R5783:Lars2	UTSW	9	123,290,661 (GRCm39)	missense	probably benign
R6045:Lars2	UTSW	9	123,201,053 (GRCm39)	missense	probably damaging	1.00
R6235:Lars2	UTSW	9	123,240,945 (GRCm39)	missense	probably damaging	1.00
R6323:Lars2	UTSW	9	123,270,659 (GRCm39)	nonsense	probably null
R6377:Lars2	UTSW	9	123,283,825 (GRCm39)	missense	probably benign	0.00
R6395:Lars2	UTSW	9	123,200,990 (GRCm39)	missense	probably benign	0.06
R7094:Lars2	UTSW	9	123,288,650 (GRCm39)	missense	probably damaging	0.99
R7144:Lars2	UTSW	9	123,261,058 (GRCm39)	missense	probably damaging	1.00
R7233:Lars2	UTSW	9	123,241,019 (GRCm39)	nonsense	probably null
R7254:Lars2	UTSW	9	123,284,028 (GRCm39)	missense	possibly damaging	0.93
R7350:Lars2	UTSW	9	123,256,545 (GRCm39)	missense	probably damaging	1.00
R7413:Lars2	UTSW	9	123,288,568 (GRCm39)	missense	probably benign	0.30
R7614:Lars2	UTSW	9	123,224,176 (GRCm39)	missense
R7683:Lars2	UTSW	9	123,206,895 (GRCm39)	critical splice donor site	probably null
R8000:Lars2	UTSW	9	123,265,309 (GRCm39)	missense	probably damaging	1.00
R8061:Lars2	UTSW	9	123,288,562 (GRCm39)	missense	probably benign
R8355:Lars2	UTSW	9	123,283,780 (GRCm39)	missense	probably damaging	1.00
R8364:Lars2	UTSW	9	123,241,019 (GRCm39)	nonsense	probably null
R8818:Lars2	UTSW	9	123,221,892 (GRCm39)	missense	possibly damaging	0.94
R9351:Lars2	UTSW	9	123,265,366 (GRCm39)	missense	probably benign	0.38
Z1177:Lars2	UTSW	9	123,283,847 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AACAGTTGTGTTAGGGTGCC -3'
(R):5'- AGCTGGGATAGGACTCTGTAAG -3'

Sequencing Primer
(F):5'- AAGACTCTGTCCCATTATCCAGTGAG -3'
(R):5'- TGTAAGAGCGTGTCTCATCACAC -3'

Posted On

2021-10-11