Mutagenetix > Incidental Mutation

Incidental Mutation 'R9008:Hnf4g'

685408

Institutional Source

Beutler Lab

Gene Symbol

Hnf4g

Ensembl Gene

ENSMUSG00000017688

Gene Name

hepatocyte nuclear factor 4, gamma

Synonyms

NR2A2

MMRRC Submission

068838-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.200) question?

Stock #

R9008 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

3573090-3724863 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 3708096 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 115 (N115S)

Ref Sequence

ENSEMBL: ENSMUSP00000104030 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000108393] [ENSMUST00000108394]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000108393
AA Change: N115S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000104030
Gene: ENSMUSG00000017688
AA Change: N115S

Domain	Start	End	E-Value	Type
ZnF_C4	9	80	6.51e-35	SMART
low complexity region	118	125	N/A	INTRINSIC
HOLI	141	299	7.29e-47	SMART
low complexity region	334	345	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000108394
AA Change: N159S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000104031
Gene: ENSMUSG00000017688
AA Change: N159S

Domain	Start	End	E-Value	Type
ZnF_C4	63	134	6.51e-35	SMART
low complexity region	172	179	N/A	INTRINSIC
HOLI	195	353	7.29e-47	SMART
low complexity region	388	399	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.5%

Validation Efficiency

98% (78/80)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele are less inclined to build nests, spend more time in a passive state during the forced swim test, and display a reduction in energy expenditure and night time activity that results in increased body weight despite adecreased intake of food and water. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc4	A	T	14: 118,849,162 (GRCm39)	S536R	probably damaging	Het
Acacb	G	A	5: 114,386,815 (GRCm39)		silent	Het
Acsm1	T	C	7: 119,258,325 (GRCm39)	Y473H	probably benign	Het
Adam30	T	A	3: 98,070,034 (GRCm39)	C622*	probably null	Het
Adprs	C	T	4: 126,210,632 (GRCm39)	V283M	probably damaging	Het
AI606181	G	T	19: 41,582,032 (GRCm39)	R67S	unknown	Het
Btbd3	A	G	2: 138,125,453 (GRCm39)	I212M	probably benign	Het
C1s1	C	T	6: 124,509,499 (GRCm39)		probably null	Het
C7	T	A	15: 5,040,409 (GRCm39)	T539S		Het
Cd5l	A	C	3: 87,275,972 (GRCm39)	D314A	probably damaging	Het
Celsr3	T	A	9: 108,706,151 (GRCm39)	V878E	possibly damaging	Het
Cfap74	T	C	4: 155,503,121 (GRCm39)	S38P		Het
Chst2	C	T	9: 95,288,347 (GRCm39)		probably benign	Het
Deaf1	T	C	7: 140,904,078 (GRCm39)	T103A	probably damaging	Het
Deup1	T	A	9: 15,511,140 (GRCm39)	D213V	probably damaging	Het
Dhrs1	A	G	14: 55,978,638 (GRCm39)		probably null	Het
Dnah7a	A	G	1: 53,701,501 (GRCm39)	V218A	possibly damaging	Het
Dock7	G	A	4: 98,833,448 (GRCm39)	Q1950*	probably null	Het
Ehf	G	A	2: 103,097,173 (GRCm39)	R283W		Het
Elovl3	A	T	19: 46,123,087 (GRCm39)	N221I	possibly damaging	Het
Gm11938	A	T	11: 99,493,966 (GRCm39)	V43E	probably damaging	Het
Hmcn1	T	C	1: 150,630,795 (GRCm39)		probably benign	Het
Hnrnpr	A	T	4: 136,056,737 (GRCm39)	N246Y	probably damaging	Het
Itpka	A	G	2: 119,579,894 (GRCm39)	E211G	probably damaging	Het
Krt78	TAGGCACGGTCACCTGGCCTCCATATTCTCTCCCAGGCACGGTCACCTGGCCTCCACATTCTCCTCTAGGCACGGTCACCTGGCCTCCATATTCTCTCCCAGGCACGGTCACCTGGCCTCCAGATTCTCTTCCAGGCATGGTCACCTGGCCTCCATATTCTCTTCCAGGCACGGTCACCTGGCCTCCA	TAGGCACGGTCACCTGGCCTCCACATTCTCCTCTAGGCACGGTCACCTGGCCTCCATATTCTCTCCCAGGCACGGTCACCTGGCCTCCAGATTCTCTTCCAGGCATGGTCACCTGGCCTCCATATTCTCTTCCAGGCACGGTCACCTGGCCTCCA	15: 101,855,211 (GRCm39)		probably benign	Het
Lcorl	A	T	5: 45,931,516 (GRCm39)		probably benign	Het
Lypd9	T	A	11: 58,338,209 (GRCm39)	E61V	probably benign	Het
Mgat5	T	C	1: 127,407,308 (GRCm39)	I658T	probably damaging	Het
Mier2	G	A	10: 79,384,274 (GRCm39)	R166W	probably damaging	Het
Mov10	A	G	3: 104,707,332 (GRCm39)	Y606H	probably benign	Het
Naa38	T	G	11: 69,287,148 (GRCm39)	V76G	probably damaging	Het
Nelfe	C	A	17: 35,073,334 (GRCm39)	P290T	possibly damaging	Het
Nfil3	A	T	13: 53,121,609 (GRCm39)	Y432N	probably damaging	Het
Nipbl	T	C	15: 8,356,608 (GRCm39)	K1593E	probably damaging	Het
Nlrc3	G	C	16: 3,776,807 (GRCm39)	L56V	possibly damaging	Het
Nlrp1a	A	T	11: 71,014,735 (GRCm39)	F172I	possibly damaging	Het
Ntn4	T	A	10: 93,569,466 (GRCm39)		probably benign	Het
Nudt2	G	A	4: 41,480,288 (GRCm39)	R57Q	probably damaging	Het
Obsl1	A	C	1: 75,482,027 (GRCm39)	L281W	probably benign	Het
Olfm4	A	T	14: 80,255,607 (GRCm39)	N250I	unknown	Het
Or10aa3	T	A	1: 173,878,413 (GRCm39)	V158E	probably damaging	Het
Or1x6	G	A	11: 50,938,938 (GRCm39)	M1I	probably null	Het
Or2m13	T	A	16: 19,226,173 (GRCm39)	I198F	probably benign	Het
Or2r2	T	C	6: 42,463,903 (GRCm39)	S75G	probably damaging	Het
Or5p50	A	G	7: 107,422,628 (GRCm39)	I16T	possibly damaging	Het
Pappa	A	T	4: 65,074,426 (GRCm39)	T327S	probably damaging	Het
Pcdhb4	T	G	18: 37,440,714 (GRCm39)	M8R	probably benign	Het
Phf21b	T	A	15: 84,671,563 (GRCm39)	I444F	probably damaging	Het
Pkd1l2	A	C	8: 117,769,037 (GRCm39)	V1205G	probably benign	Het
Plec	T	C	15: 76,060,232 (GRCm39)	Y3235C	probably damaging	Het
Pnmt	C	T	11: 98,278,832 (GRCm39)	T266I	possibly damaging	Het
Ppfia2	T	A	10: 106,655,220 (GRCm39)	D262E	probably benign	Het
Rabggta	A	T	14: 55,955,913 (GRCm39)	L448Q	probably damaging	Het
Rap1gds1	C	T	3: 138,661,177 (GRCm39)	R449H	probably benign	Het
Rictor	T	A	15: 6,801,610 (GRCm39)		probably benign	Het
Rttn	T	C	18: 89,027,556 (GRCm39)	F557S	probably damaging	Het
Ryr3	A	G	2: 112,465,748 (GRCm39)	C4809R	probably damaging	Het
Sacs	A	C	14: 61,441,992 (GRCm39)	D1346A	probably benign	Het
Slain1	T	A	14: 103,923,191 (GRCm39)	S261T	probably damaging	Het
Slc22a4	C	T	11: 53,881,664 (GRCm39)	W351*	probably null	Het
Smpd3	C	T	8: 106,984,058 (GRCm39)	G554S	probably benign	Het
Spag17	C	T	3: 99,934,942 (GRCm39)	S716F	possibly damaging	Het
Spata31f1e	C	T	4: 42,792,546 (GRCm39)	G529S	probably benign	Het
Spg11	C	T	2: 121,900,413 (GRCm39)	M1546I	probably benign	Het
Spmip11	T	G	15: 98,486,493 (GRCm39)	S88A	possibly damaging	Het
Stac3	C	T	10: 127,339,454 (GRCm39)	L117F	probably damaging	Het
Surf6	A	G	2: 26,782,536 (GRCm39)	W264R	probably damaging	Het
Taar7e	T	C	10: 23,913,810 (GRCm39)	V100A	probably damaging	Het
Tenm3	T	C	8: 48,795,688 (GRCm39)	H534R	probably damaging	Het
Tinagl1	C	A	4: 130,067,823 (GRCm39)	R57L	probably damaging	Het
Tnfrsf11a	G	A	1: 105,754,854 (GRCm39)	A309T	possibly damaging	Het
Traf6	A	G	2: 101,527,333 (GRCm39)	Y361C	possibly damaging	Het
Ttn	A	T	2: 76,777,334 (GRCm39)		probably benign	Het
Ufl1	A	T	4: 25,254,778 (GRCm39)	Y559*	probably null	Het
Upk1b	A	T	16: 38,607,570 (GRCm39)	N52K	probably damaging	Het
Uqcrb	A	G	13: 67,053,363 (GRCm39)	S5P	probably benign	Het
Use1	A	G	8: 71,819,688 (GRCm39)	Y3C	unknown	Het
Usp9y	T	A	Y: 1,434,993 (GRCm39)	I279L	possibly damaging	Het
Vmn1r142	A	G	7: 21,862,796 (GRCm39)	L222P	probably damaging	Het
Vmn1r184	A	C	7: 25,967,177 (GRCm39)	N308H	probably benign	Het
Vmn2r14	C	A	5: 109,367,893 (GRCm39)	M366I	probably benign	Het
Vmn2r73	G	T	7: 85,521,904 (GRCm39)	S145Y	probably damaging	Het
Wdfy1	A	T	1: 79,692,697 (GRCm39)	W207R	probably damaging	Het
Zbtb38	A	T	9: 96,569,100 (GRCm39)	N661K	probably benign	Het
Zkscan3	G	T	13: 21,572,383 (GRCm39)	H416Q	possibly damaging	Het

Other mutations in Hnf4g

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00089:Hnf4g	APN	3	3,713,142 (GRCm39)	missense	probably benign
IGL00832:Hnf4g	APN	3	3,706,336 (GRCm39)	missense	probably damaging	1.00
IGL01571:Hnf4g	APN	3	3,716,326 (GRCm39)	splice site	probably benign
IGL01896:Hnf4g	APN	3	3,716,470 (GRCm39)	missense	probably damaging	1.00
IGL02068:Hnf4g	APN	3	3,709,636 (GRCm39)	missense	probably benign
IGL03040:Hnf4g	APN	3	3,699,271 (GRCm39)	utr 5 prime	probably benign
IGL03097:Hnf4g	UTSW	3	3,716,674 (GRCm39)	missense	probably damaging	1.00
R0124:Hnf4g	UTSW	3	3,708,142 (GRCm39)	splice site	probably benign
R0477:Hnf4g	UTSW	3	3,716,851 (GRCm39)	splice site	probably benign
R0512:Hnf4g	UTSW	3	3,716,682 (GRCm39)	missense	probably damaging	1.00
R0744:Hnf4g	UTSW	3	3,716,689 (GRCm39)	missense	possibly damaging	0.92
R1323:Hnf4g	UTSW	3	3,699,281 (GRCm39)	missense	possibly damaging	0.73
R1323:Hnf4g	UTSW	3	3,699,281 (GRCm39)	missense	possibly damaging	0.73
R1656:Hnf4g	UTSW	3	3,718,011 (GRCm39)	missense	probably benign
R1982:Hnf4g	UTSW	3	3,703,268 (GRCm39)	missense	probably damaging	0.99
R2336:Hnf4g	UTSW	3	3,706,284 (GRCm39)	missense	probably benign	0.25
R3104:Hnf4g	UTSW	3	3,717,916 (GRCm39)	missense	probably benign	0.42
R3105:Hnf4g	UTSW	3	3,717,916 (GRCm39)	missense	probably benign	0.42
R3106:Hnf4g	UTSW	3	3,717,916 (GRCm39)	missense	probably benign	0.42
R3843:Hnf4g	UTSW	3	3,716,362 (GRCm39)	missense	probably benign	0.09
R4200:Hnf4g	UTSW	3	3,716,344 (GRCm39)	missense	possibly damaging	0.94
R4248:Hnf4g	UTSW	3	3,717,909 (GRCm39)	missense	possibly damaging	0.69
R4418:Hnf4g	UTSW	3	3,713,154 (GRCm39)	missense	possibly damaging	0.66
R4756:Hnf4g	UTSW	3	3,708,069 (GRCm39)	missense	possibly damaging	0.69
R4871:Hnf4g	UTSW	3	3,716,448 (GRCm39)	missense	possibly damaging	0.94
R5022:Hnf4g	UTSW	3	3,709,647 (GRCm39)	missense	probably damaging	0.99
R5023:Hnf4g	UTSW	3	3,709,647 (GRCm39)	missense	probably damaging	0.99
R5088:Hnf4g	UTSW	3	3,722,181 (GRCm39)	missense	probably benign	0.09
R5604:Hnf4g	UTSW	3	3,722,186 (GRCm39)	nonsense	probably null
R6746:Hnf4g	UTSW	3	3,722,170 (GRCm39)	nonsense	probably null
R7088:Hnf4g	UTSW	3	3,713,185 (GRCm39)	splice site	probably null
R7335:Hnf4g	UTSW	3	3,717,924 (GRCm39)	missense	possibly damaging	0.93
R8153:Hnf4g	UTSW	3	3,699,250 (GRCm39)	start gained	probably benign
R8182:Hnf4g	UTSW	3	3,716,679 (GRCm39)	missense	possibly damaging	0.82
R8676:Hnf4g	UTSW	3	3,708,133 (GRCm39)	splice site	probably benign
R9153:Hnf4g	UTSW	3	3,573,378 (GRCm39)	start gained	probably benign
R9671:Hnf4g	UTSW	3	3,703,273 (GRCm39)	missense	probably benign	0.00
R9802:Hnf4g	UTSW	3	3,699,404 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TGGATTTCAAAGTGGTTCAAGAGG -3'
(R):5'- TTCCCTCAGTATTGGAGCAGATG -3'

Sequencing Primer
(F):5'- CTGTAGCCTACGTTAGAGATC -3'
(R):5'- TTGCAATGAAACAGAACAACATG -3'

Posted On

2021-10-11