Incidental Mutation 'R9015:Ly75'
ID 685886
Institutional Source Beutler Lab
Gene Symbol Ly75
Ensembl Gene ENSMUSG00000026980
Gene Name lymphocyte antigen 75
Synonyms DEC-205, CD205
MMRRC Submission 068845-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R9015 (G1)
Quality Score 225.009
Status Not validated
Chromosome 2
Chromosomal Location 60122447-60213617 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 60146442 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Lysine at position 1279 (E1279K)
Ref Sequence ENSEMBL: ENSMUSP00000028362 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028362] [ENSMUST00000112533]
AlphaFold Q60767
Predicted Effect probably benign
Transcript: ENSMUST00000028362
AA Change: E1279K

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000028362
Gene: ENSMUSG00000026980
AA Change: E1279K

DomainStartEndE-ValueType
signal peptide 1 27 N/A INTRINSIC
RICIN 33 146 2.63e-17 SMART
FN2 162 209 1.22e-23 SMART
CLECT 216 341 7.36e-32 SMART
CLECT 361 486 9.28e-29 SMART
CLECT 501 624 1.11e-17 SMART
CLECT 643 791 1.93e-26 SMART
CLECT 811 932 7.94e-2 SMART
CLECT 952 1091 5.81e-21 SMART
CLECT 1104 1222 1.04e-22 SMART
CLECT 1240 1382 3.48e-10 SMART
CLECT 1395 1513 9.59e-22 SMART
CLECT 1530 1661 7.79e-22 SMART
transmembrane domain 1670 1692 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000112533
AA Change: E1279K

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000108152
Gene: ENSMUSG00000026980
AA Change: E1279K

DomainStartEndE-ValueType
signal peptide 1 27 N/A INTRINSIC
RICIN 33 146 2.63e-17 SMART
FN2 162 209 1.22e-23 SMART
CLECT 216 341 7.36e-32 SMART
CLECT 361 486 9.28e-29 SMART
CLECT 501 624 1.11e-17 SMART
CLECT 643 791 1.93e-26 SMART
CLECT 811 932 7.94e-2 SMART
CLECT 952 1091 5.81e-21 SMART
CLECT 1104 1222 1.04e-22 SMART
CLECT 1240 1382 3.48e-10 SMART
CLECT 1395 1513 9.59e-22 SMART
CLECT 1530 1661 7.79e-22 SMART
transmembrane domain 1670 1692 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 98.9%
Validation Efficiency 100% (93/93)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele display abnormalities in CD8-positive T cell morphology and cytotoxic T cell physiology. [provided by MGI curators]
Allele List at MGI

All alleles(7) : Targeted, knock-out(1) Targeted, other(1) Gene trapped(5)

Other mutations in this stock
Total: 93 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam22 T C 5: 8,136,688 (GRCm39) probably benign Het
Adamtsl1 A G 4: 86,150,847 (GRCm39) D335G probably damaging Het
Adcy8 T C 15: 64,597,206 (GRCm39) probably benign Het
Alas1 A T 9: 106,113,670 (GRCm39) I525N probably benign Het
Aoah A T 13: 21,184,197 (GRCm39) silent Het
Aox1 G A 1: 58,382,851 (GRCm39) V1044M probably damaging Het
Apcdd1 A T 18: 63,083,157 (GRCm39) Y329F possibly damaging Het
Arhgap10 A C 8: 77,985,687 (GRCm39) C727G probably benign Het
Arid4a G A 12: 71,122,168 (GRCm39) D528N possibly damaging Het
Atp8a1 A G 5: 67,887,250 (GRCm39) V611A Het
BC004004 T C 17: 29,517,637 (GRCm39) F284L probably damaging Het
Bean1 CT C 8: 104,908,664 (GRCm39) probably null Het
Cep295 T C 9: 15,244,264 (GRCm39) I1397M probably benign Het
Cep63 A G 9: 102,496,111 (GRCm39) S99P probably damaging Het
Coq3 T A 4: 21,899,107 (GRCm39) S147T probably benign Het
Crym A T 7: 119,801,090 (GRCm39) S20T probably benign Het
Ctr9 T A 7: 110,643,108 (GRCm39) N493K probably benign Het
Dchs2 A G 3: 83,188,751 (GRCm39) I1372V possibly damaging Het
Ddi2 G A 4: 141,412,747 (GRCm39) T55M probably benign Het
Dnah1 T C 14: 30,986,316 (GRCm39) M3724V probably damaging Het
Dst A G 1: 34,326,337 (GRCm39) I4690V probably benign Het
Ect2l T C 10: 18,039,148 (GRCm39) T429A probably benign Het
Eif3c G T 7: 126,155,538 (GRCm39) H577N probably damaging Het
Erg A G 16: 95,162,126 (GRCm39) S334P possibly damaging Het
Faf2 A G 13: 54,796,139 (GRCm39) S127G probably benign Het
Fbxl3 T A 14: 103,329,790 (GRCm39) T141S possibly damaging Het
Fbxw4 T A 19: 45,624,874 (GRCm39) M122L probably benign Het
Fgd4 T C 16: 16,271,941 (GRCm39) M476V probably damaging Het
Flvcr2 A T 12: 85,829,779 (GRCm39) I263F probably benign Het
Gadl1 A T 9: 115,794,705 (GRCm39) R293S probably benign Het
Gm11983 G T 11: 6,787,033 (GRCm39) F31L unknown Het
Gmnn A T 13: 24,940,638 (GRCm39) N70K probably benign Het
Gpr3 A G 4: 132,938,390 (GRCm39) V94A possibly damaging Het
Greb1l A G 18: 10,541,675 (GRCm39) S1141G probably benign Het
Helz2 A T 2: 180,870,792 (GRCm39) V2892E probably damaging Het
Hivep1 T A 13: 42,311,849 (GRCm39) M1363K probably benign Het
Hk1 T A 10: 62,128,118 (GRCm39) T336S possibly damaging Het
Hpgds A T 6: 65,115,229 (GRCm39) I18N possibly damaging Het
Insrr T A 3: 87,720,910 (GRCm39) L1056Q probably damaging Het
Ints10 A G 8: 69,260,139 (GRCm39) M288V probably benign Het
Itgb6 T C 2: 60,485,032 (GRCm39) D237G probably damaging Het
Kcnf1 A G 12: 17,225,303 (GRCm39) I306T probably damaging Het
Kdm3b G A 18: 34,963,212 (GRCm39) G1556D probably damaging Het
Kif5b A G 18: 6,216,892 (GRCm39) L477P probably damaging Het
Klf5 T G 14: 99,540,919 (GRCm39) *310G probably null Het
Lnx1 A G 5: 74,780,783 (GRCm39) V246A probably benign Het
Lztr1 T A 16: 17,337,305 (GRCm39) C233S probably benign Het
Mfsd6l T G 11: 68,447,536 (GRCm39) I129S probably benign Het
Mrgprx2 T A 7: 48,148,938 (GRCm39) probably benign Het
Ncapd2 A T 6: 125,145,285 (GRCm39) probably benign Het
Or10ag53 T A 2: 87,082,546 (GRCm39) Y88* probably null Het
Or12e9 T A 2: 87,202,485 (GRCm39) M203K possibly damaging Het
Or2a25 G T 6: 42,888,825 (GRCm39) V123L possibly damaging Het
Or8g30 A C 9: 39,230,019 (GRCm39) V297G probably damaging Het
Pde6a A G 18: 61,397,047 (GRCm39) H631R probably damaging Het
Pfkl C T 10: 77,824,794 (GRCm39) G665D probably damaging Het
Pik3ap1 T A 19: 41,270,430 (GRCm39) E753V probably damaging Het
Pik3cd G T 4: 149,740,055 (GRCm39) R502S probably benign Het
Piwil2 T A 14: 70,627,984 (GRCm39) I762L probably benign Het
Pkd1 T A 17: 24,784,636 (GRCm39) L394* probably null Het
Plekhb2 A G 1: 34,916,046 (GRCm39) D195G probably benign Het
Plppr5 T C 3: 117,456,103 (GRCm39) M208T probably damaging Het
Polr2i G A 7: 29,932,513 (GRCm39) V115I unknown Het
Prkacb T C 3: 146,456,239 (GRCm39) S187G probably null Het
Prkag3 G T 1: 74,780,353 (GRCm39) H437Q probably benign Het
Prlr T A 15: 10,319,352 (GRCm39) Y94N probably damaging Het
Prmt6 T C 3: 110,157,214 (GRCm39) I358M probably benign Het
Psd4 A G 2: 24,287,492 (GRCm39) R475G Het
Rad51b G A 12: 79,347,417 (GRCm39) C27Y probably damaging Het
Scfd2 A G 5: 74,691,625 (GRCm39) L219P probably damaging Het
Scn5a G A 9: 119,381,142 (GRCm39) probably benign Het
Sec24d T C 3: 123,121,287 (GRCm39) V391A probably benign Het
Selenbp2 T A 3: 94,607,332 (GRCm39) L251Q probably damaging Het
Sh3rf1 T C 8: 61,827,202 (GRCm39) V652A probably benign Het
Slc11a2 A G 15: 100,301,186 (GRCm39) V289A probably benign Het
Smim29 T C 17: 27,783,223 (GRCm39) D48G probably benign Het
Sox8 T A 17: 25,789,135 (GRCm39) Y121F probably damaging Het
Taar7a A T 10: 23,868,733 (GRCm39) I216N probably damaging Het
Tanc1 T A 2: 59,622,224 (GRCm39) S448T probably benign Het
Tas2r119 G A 15: 32,178,226 (GRCm39) G264D probably damaging Het
Trav7-6 A G 14: 53,954,604 (GRCm39) K65E probably benign Het
Trim17 A G 11: 58,856,057 (GRCm39) E38G probably damaging Het
Trub2 A T 2: 29,668,276 (GRCm39) probably benign Het
Ttn T A 2: 76,571,964 (GRCm39) M26310L probably damaging Het
Unc13c T G 9: 73,453,322 (GRCm39) I1823L probably benign Het
Vav2 C A 2: 27,160,151 (GRCm39) E728* probably null Het
Virma A G 4: 11,540,494 (GRCm39) D1465G probably benign Het
Vmn2r72 T G 7: 85,398,388 (GRCm39) M531L probably benign Het
Vwa3b G A 1: 37,203,597 (GRCm39) V59I possibly damaging Het
Xrcc1 G A 7: 24,271,642 (GRCm39) E542K probably benign Het
Zdhhc6 T G 19: 55,287,318 (GRCm39) T381P probably benign Het
Zdhhc8 T C 16: 18,041,141 (GRCm39) S740G probably damaging Het
Zfp106 T C 2: 120,364,019 (GRCm39) K819R probably damaging Het
Other mutations in Ly75
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00561:Ly75 APN 2 60,206,421 (GRCm39) missense probably damaging 1.00
IGL01072:Ly75 APN 2 60,184,840 (GRCm39) missense probably damaging 1.00
IGL01409:Ly75 APN 2 60,152,036 (GRCm39) splice site probably null
IGL01432:Ly75 APN 2 60,206,351 (GRCm39) missense probably damaging 1.00
IGL01626:Ly75 APN 2 60,131,359 (GRCm39) missense probably benign 0.13
IGL01690:Ly75 APN 2 60,168,655 (GRCm39) missense probably damaging 1.00
IGL01862:Ly75 APN 2 60,129,516 (GRCm39) missense probably damaging 1.00
IGL01982:Ly75 APN 2 60,142,108 (GRCm39) missense probably damaging 1.00
IGL02075:Ly75 APN 2 60,182,700 (GRCm39) missense probably damaging 0.99
IGL02338:Ly75 APN 2 60,184,796 (GRCm39) missense probably benign 0.04
IGL02364:Ly75 APN 2 60,188,851 (GRCm39) missense probably damaging 1.00
IGL02456:Ly75 APN 2 60,124,125 (GRCm39) missense probably benign 0.09
IGL02474:Ly75 APN 2 60,213,526 (GRCm39) missense probably null 1.00
IGL02608:Ly75 APN 2 60,152,244 (GRCm39) missense probably benign 0.41
IGL02986:Ly75 APN 2 60,138,535 (GRCm39) missense probably damaging 1.00
IGL03015:Ly75 APN 2 60,206,504 (GRCm39) missense probably damaging 1.00
IGL03049:Ly75 APN 2 60,182,414 (GRCm39) missense probably damaging 0.99
euphues UTSW 2 60,129,389 (GRCm39) critical splice donor site probably null
four_score UTSW 2 60,142,115 (GRCm39) missense possibly damaging 0.75
lyly UTSW 2 60,158,217 (GRCm39) missense possibly damaging 0.49
Witty UTSW 2 60,184,844 (GRCm39) missense probably damaging 1.00
D605:Ly75 UTSW 2 60,182,696 (GRCm39) critical splice donor site probably null
R0046:Ly75 UTSW 2 60,169,801 (GRCm39) intron probably benign
R0055:Ly75 UTSW 2 60,152,262 (GRCm39) missense probably benign 0.01
R0055:Ly75 UTSW 2 60,152,262 (GRCm39) missense probably benign 0.01
R0071:Ly75 UTSW 2 60,152,163 (GRCm39) missense probably benign 0.01
R0071:Ly75 UTSW 2 60,152,163 (GRCm39) missense probably benign 0.01
R0285:Ly75 UTSW 2 60,148,663 (GRCm39) missense probably damaging 1.00
R0387:Ly75 UTSW 2 60,136,748 (GRCm39) missense probably benign 0.20
R0492:Ly75 UTSW 2 60,138,620 (GRCm39) missense probably damaging 1.00
R0688:Ly75 UTSW 2 60,146,565 (GRCm39) missense probably benign 0.41
R1367:Ly75 UTSW 2 60,124,102 (GRCm39) splice site probably null
R1463:Ly75 UTSW 2 60,199,101 (GRCm39) critical splice donor site probably null
R1581:Ly75 UTSW 2 60,158,237 (GRCm39) missense probably damaging 1.00
R1663:Ly75 UTSW 2 60,144,578 (GRCm39) missense probably damaging 1.00
R1818:Ly75 UTSW 2 60,142,121 (GRCm39) missense probably damaging 1.00
R1881:Ly75 UTSW 2 60,180,284 (GRCm39) missense probably benign 0.00
R2244:Ly75 UTSW 2 60,180,257 (GRCm39) missense probably benign 0.01
R2905:Ly75 UTSW 2 60,164,898 (GRCm39) missense probably benign 0.00
R3967:Ly75 UTSW 2 60,158,217 (GRCm39) missense possibly damaging 0.49
R3968:Ly75 UTSW 2 60,158,217 (GRCm39) missense possibly damaging 0.49
R4039:Ly75 UTSW 2 60,183,339 (GRCm39) missense probably damaging 1.00
R4406:Ly75 UTSW 2 60,184,894 (GRCm39) missense probably damaging 1.00
R4526:Ly75 UTSW 2 60,161,117 (GRCm39) missense probably benign 0.09
R4647:Ly75 UTSW 2 60,138,622 (GRCm39) missense probably damaging 1.00
R4795:Ly75 UTSW 2 60,180,284 (GRCm39) missense probably benign 0.00
R4796:Ly75 UTSW 2 60,180,284 (GRCm39) missense probably benign 0.00
R4962:Ly75 UTSW 2 60,182,469 (GRCm39) missense probably damaging 1.00
R4979:Ly75 UTSW 2 60,206,238 (GRCm39) missense probably damaging 1.00
R5072:Ly75 UTSW 2 60,206,307 (GRCm39) missense probably damaging 1.00
R5288:Ly75 UTSW 2 60,133,985 (GRCm39) missense probably damaging 1.00
R5373:Ly75 UTSW 2 60,142,115 (GRCm39) missense possibly damaging 0.75
R5374:Ly75 UTSW 2 60,142,115 (GRCm39) missense possibly damaging 0.75
R5384:Ly75 UTSW 2 60,164,831 (GRCm39) nonsense probably null
R5385:Ly75 UTSW 2 60,133,985 (GRCm39) missense probably damaging 1.00
R5395:Ly75 UTSW 2 60,195,455 (GRCm39) missense probably benign 0.41
R5531:Ly75 UTSW 2 60,195,489 (GRCm39) missense probably damaging 0.98
R5662:Ly75 UTSW 2 60,182,725 (GRCm39) missense probably damaging 1.00
R5667:Ly75 UTSW 2 60,138,655 (GRCm39) missense probably damaging 1.00
R5668:Ly75 UTSW 2 60,184,844 (GRCm39) missense probably damaging 1.00
R5671:Ly75 UTSW 2 60,138,655 (GRCm39) missense probably damaging 1.00
R5677:Ly75 UTSW 2 60,129,426 (GRCm39) missense probably benign 0.00
R5764:Ly75 UTSW 2 60,148,783 (GRCm39) missense probably benign
R5896:Ly75 UTSW 2 60,213,490 (GRCm39) missense probably benign
R6025:Ly75 UTSW 2 60,206,306 (GRCm39) missense probably damaging 1.00
R6113:Ly75 UTSW 2 60,199,217 (GRCm39) missense probably benign 0.04
R6448:Ly75 UTSW 2 60,129,389 (GRCm39) critical splice donor site probably null
R6601:Ly75 UTSW 2 60,148,720 (GRCm39) missense probably benign 0.11
R6745:Ly75 UTSW 2 60,138,523 (GRCm39) missense probably damaging 1.00
R6955:Ly75 UTSW 2 60,158,217 (GRCm39) missense possibly damaging 0.49
R6960:Ly75 UTSW 2 60,136,749 (GRCm39) missense probably benign
R7100:Ly75 UTSW 2 60,136,778 (GRCm39) missense probably benign
R7110:Ly75 UTSW 2 60,206,528 (GRCm39) missense probably benign 0.31
R7203:Ly75 UTSW 2 60,154,196 (GRCm39) nonsense probably null
R7291:Ly75 UTSW 2 60,160,337 (GRCm39) missense probably damaging 0.98
R7308:Ly75 UTSW 2 60,164,859 (GRCm39) missense probably benign 0.04
R7447:Ly75 UTSW 2 60,164,818 (GRCm39) nonsense probably null
R7512:Ly75 UTSW 2 60,164,907 (GRCm39) missense probably damaging 1.00
R7595:Ly75 UTSW 2 60,124,171 (GRCm39) missense probably benign 0.01
R7976:Ly75 UTSW 2 60,195,432 (GRCm39) missense probably damaging 1.00
R8005:Ly75 UTSW 2 60,163,278 (GRCm39) missense probably damaging 1.00
R8171:Ly75 UTSW 2 60,144,572 (GRCm39) missense possibly damaging 0.51
R8392:Ly75 UTSW 2 60,180,284 (GRCm39) missense probably benign 0.00
R8705:Ly75 UTSW 2 60,148,729 (GRCm39) missense probably damaging 0.98
R8714:Ly75 UTSW 2 60,164,829 (GRCm39) missense probably damaging 1.00
R8798:Ly75 UTSW 2 60,154,270 (GRCm39) missense probably benign 0.32
R8799:Ly75 UTSW 2 60,178,785 (GRCm39) missense probably damaging 1.00
R8834:Ly75 UTSW 2 60,161,433 (GRCm39) missense probably benign
R8990:Ly75 UTSW 2 60,188,903 (GRCm39) missense probably benign 0.10
R9547:Ly75 UTSW 2 60,161,069 (GRCm39) critical splice donor site probably null
R9628:Ly75 UTSW 2 60,158,285 (GRCm39) missense probably damaging 1.00
R9659:Ly75 UTSW 2 60,168,665 (GRCm39) missense probably damaging 1.00
R9660:Ly75 UTSW 2 60,154,184 (GRCm39) missense probably damaging 1.00
R9747:Ly75 UTSW 2 60,136,672 (GRCm39) critical splice donor site probably null
X0025:Ly75 UTSW 2 60,184,819 (GRCm39) missense probably damaging 1.00
Z1177:Ly75 UTSW 2 60,182,477 (GRCm39) missense possibly damaging 0.65
Z1177:Ly75 UTSW 2 60,180,348 (GRCm39) nonsense probably null
Predicted Primers
Posted On 2021-10-11