Incidental Mutation 'R9027:Pbx4'
ID 686804
Institutional Source Beutler Lab
Gene Symbol Pbx4
Ensembl Gene ENSMUSG00000031860
Gene Name pre B cell leukemia homeobox 4
Synonyms 2410015M21Rik
MMRRC Submission 068856-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.430) question?
Stock # R9027 (G1)
Quality Score 225.009
Status Validated
Chromosome 8
Chromosomal Location 70285141-70324942 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 70316999 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glutamic Acid at position 85 (D85E)
Ref Sequence ENSEMBL: ENSMUSP00000080219 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000081503] [ENSMUST00000131637] [ENSMUST00000132899] [ENSMUST00000134777] [ENSMUST00000156319]
AlphaFold Q99NE9
Predicted Effect possibly damaging
Transcript: ENSMUST00000081503
AA Change: D85E

PolyPhen 2 Score 0.854 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000080219
Gene: ENSMUSG00000031860
AA Change: D85E

DomainStartEndE-ValueType
low complexity region 2 23 N/A INTRINSIC
Pfam:PBC 24 214 1.2e-89 PFAM
HOX 215 280 3.44e-16 SMART
low complexity region 356 370 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000131637
SMART Domains Protein: ENSMUSP00000121369
Gene: ENSMUSG00000031860

DomainStartEndE-ValueType
Pfam:PBC 19 75 3.4e-25 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000132899
SMART Domains Protein: ENSMUSP00000118287
Gene: ENSMUSG00000031860

DomainStartEndE-ValueType
Pfam:PBC 19 74 1.6e-25 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000134777
SMART Domains Protein: ENSMUSP00000122281
Gene: ENSMUSG00000031860

DomainStartEndE-ValueType
Pfam:PBC 19 84 5.8e-26 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000156319
SMART Domains Protein: ENSMUSP00000119526
Gene: ENSMUSG00000031860

DomainStartEndE-ValueType
Pfam:PBC 19 75 1.3e-25 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.1%
Validation Efficiency 98% (59/60)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the pre-B cell leukemia transcription factor family. These proteins are homeobox proteins that play critical roles in embryonic development and cellular differentiation both as Hox cofactors and through Hox-independent pathways. The encoded protein contains a homeobox DNA-binding domain, but specific functions of the protein have not been determined. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, May 2011]
Allele List at MGI
Other mutations in this stock
Total: 65 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam1b C A 5: 121,640,788 (GRCm39) E86* probably null Het
Ahnak T G 19: 8,984,617 (GRCm39) I1967S possibly damaging Het
Alox12e A G 11: 70,212,600 (GRCm39) V83A possibly damaging Het
Arhgap20 A T 9: 51,754,977 (GRCm39) R439S probably damaging Het
Arl1 A G 10: 88,569,458 (GRCm39) I20V probably damaging Het
Atad2 T C 15: 57,995,628 (GRCm39) D93G probably benign Het
Btbd7 T G 12: 102,804,838 (GRCm39) K67N probably damaging Het
C130050O18Rik A G 5: 139,400,301 (GRCm39) N118S probably benign Het
Ccz1 A C 5: 143,946,120 (GRCm39) probably benign Het
Cdk19 A G 10: 40,355,728 (GRCm39) S479G unknown Het
Chrd A G 16: 20,555,737 (GRCm39) T503A probably damaging Het
Clca4b G A 3: 144,617,827 (GRCm39) R759* probably null Het
Cpa5 G T 6: 30,612,604 (GRCm39) M1I probably null Het
Cr2 A T 1: 194,834,029 (GRCm39) I920N probably benign Het
Crmp1 C A 5: 37,437,947 (GRCm39) Y430* probably null Het
Dars1 A T 1: 128,296,163 (GRCm39) V390D possibly damaging Het
Dmtn A G 14: 70,853,555 (GRCm39) S85P probably damaging Het
Ermardl1 A G 17: 15,242,364 (GRCm39) E416G unknown Het
Fancm C A 12: 65,122,605 (GRCm39) D42E probably damaging Het
Gabrg3 T A 7: 56,423,122 (GRCm39) Y192F possibly damaging Het
Gpr3 A T 4: 132,938,209 (GRCm39) Y154* probably null Het
Huwe1 G A X: 150,716,084 (GRCm39) R4331Q unknown Het
Ints5 C A 19: 8,873,322 (GRCm39) P427Q possibly damaging Het
Jhy A T 9: 40,828,823 (GRCm39) V361D probably benign Het
Klhl33 G A 14: 51,130,322 (GRCm39) Q131* probably null Het
Lama2 A T 10: 27,080,881 (GRCm39) C981S probably damaging Het
Mks1 C A 11: 87,748,041 (GRCm39) L225I probably damaging Het
Ms4a20 A T 19: 11,083,055 (GRCm39) Y122N probably damaging Het
Nfasc T A 1: 132,539,343 (GRCm39) S402C probably damaging Het
Or2a57 T C 6: 43,213,358 (GRCm39) I272T possibly damaging Het
Or4k50-ps1 A T 2: 111,522,517 (GRCm39) Y218F unknown Het
Or51g2 T C 7: 102,622,560 (GRCm39) D213G probably damaging Het
Plcd1 T C 9: 118,913,709 (GRCm39) T50A probably damaging Het
Plk5 C G 10: 80,193,830 (GRCm39) R40G probably damaging Het
Psen2 C A 1: 180,056,972 (GRCm39) E351* probably null Het
Rragd G A 4: 32,996,083 (GRCm39) V143I probably damaging Het
Rsph14 A T 10: 74,795,423 (GRCm39) M254K probably damaging Het
Selenoi C T 5: 30,437,607 (GRCm39) probably benign Het
Six6 T C 12: 72,986,935 (GRCm39) S36P Het
Slc12a8 T C 16: 33,445,215 (GRCm39) S370P probably benign Het
Slc25a46 A G 18: 31,716,432 (GRCm39) Y357H probably benign Het
Socs2 A T 10: 95,248,948 (GRCm39) V55D probably damaging Het
Socs6 T C 18: 88,888,852 (GRCm39) E21G probably benign Het
Spata31e4 C T 13: 50,857,007 (GRCm39) Q882* probably null Het
Speg A T 1: 75,365,076 (GRCm39) T486S possibly damaging Het
Spryd3 A G 15: 102,027,843 (GRCm39) Y235H probably damaging Het
Sry GCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTG GCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTG Y: 2,662,638 (GRCm39) probably benign Het
Stxbp5l T C 16: 37,165,473 (GRCm39) K82E probably damaging Het
Sugt1 A G 14: 79,825,155 (GRCm39) probably benign Het
Synm T C 7: 67,384,440 (GRCm39) Y1074C probably damaging Het
Sytl2 A G 7: 90,028,748 (GRCm39) T476A probably benign Het
Tbc1d1 T C 5: 64,414,349 (GRCm39) S237P probably benign Het
Tbc1d5 C A 17: 51,063,692 (GRCm39) M629I probably damaging Het
Tlr11 G A 14: 50,598,749 (GRCm39) G245D probably damaging Het
Tspan4 T C 7: 141,069,577 (GRCm39) V59A probably benign Het
Tulp4 T A 17: 6,283,472 (GRCm39) V1167E possibly damaging Het
Usp42 G A 5: 143,708,906 (GRCm39) T204M probably damaging Het
Vapb A G 2: 173,617,948 (GRCm39) K147R possibly damaging Het
Vmn1r228 T C 17: 20,997,422 (GRCm39) D32G probably benign Het
Vmn2r33 A G 7: 7,554,168 (GRCm39) F795S probably damaging Het
Vmn2r34 A T 7: 7,675,527 (GRCm39) N620K probably damaging Het
Vwf G T 6: 125,643,626 (GRCm39) C2389F Het
Wdr81 T C 11: 75,332,908 (GRCm39) E652G Het
Wdr81 A T 11: 75,343,207 (GRCm39) S687T probably benign Het
Zcrb1 A G 15: 93,285,456 (GRCm39) probably null Het
Other mutations in Pbx4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02900:Pbx4 APN 8 70,319,216 (GRCm39) missense probably damaging 1.00
IGL03274:Pbx4 APN 8 70,319,200 (GRCm39) missense probably damaging 1.00
IGL03358:Pbx4 APN 8 70,311,761 (GRCm39) missense probably benign 0.00
R0513:Pbx4 UTSW 8 70,317,529 (GRCm39) missense probably benign 0.01
R1980:Pbx4 UTSW 8 70,322,776 (GRCm39) missense probably benign 0.00
R4738:Pbx4 UTSW 8 70,317,619 (GRCm39) missense probably damaging 1.00
R5366:Pbx4 UTSW 8 70,322,820 (GRCm39) missense probably benign 0.26
R6365:Pbx4 UTSW 8 70,324,857 (GRCm39) splice site probably null
R6372:Pbx4 UTSW 8 70,324,694 (GRCm39) missense possibly damaging 0.93
R7037:Pbx4 UTSW 8 70,317,525 (GRCm39) missense probably damaging 1.00
R7585:Pbx4 UTSW 8 70,285,475 (GRCm39) missense probably damaging 0.99
R7760:Pbx4 UTSW 8 70,285,445 (GRCm39) missense probably benign 0.39
R8237:Pbx4 UTSW 8 70,317,093 (GRCm39) missense probably benign 0.02
R9025:Pbx4 UTSW 8 70,317,097 (GRCm39) missense probably benign 0.30
Z1177:Pbx4 UTSW 8 70,285,318 (GRCm39) unclassified probably benign
Predicted Primers PCR Primer
(F):5'- AGGTGTCTCTGATCCAATGTGG -3'
(R):5'- GGTAAATCTGTCGGATCTGGGAC -3'

Sequencing Primer
(F):5'- CTACACTGGGCAGCATACAGTTG -3'
(R):5'- ACAGCTTGGCCCTGTAGTCTG -3'
Posted On 2021-11-19