Mutagenetix > Incidental Mutation

Incidental Mutation 'R9038:Pde4c'

687542

Institutional Source

Beutler Lab

Gene Symbol

Pde4c

Ensembl Gene

ENSMUSG00000031842

Gene Name

phosphodiesterase 4C, cAMP specific

Synonyms

Dpde1, dunce, E130301F19Rik

MMRRC Submission

068866-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9038 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

71176485-71203835 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to C at 71179550 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Leucine at position 34 (V34L)

Ref Sequence

ENSEMBL: ENSMUSP00000105722 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034307] [ENSMUST00000110095] [ENSMUST00000123739] [ENSMUST00000179347] [ENSMUST00000213065]

AlphaFold

Q3UEI1

Predicted Effect

probably benign
Transcript: ENSMUST00000034307
AA Change: V34L

PolyPhen 2 Score 0.043 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000034307
Gene: ENSMUSG00000031842
AA Change: V34L

Domain	Start	End	E-Value	Type
low complexity region	40	56	N/A	INTRINSIC
HDc	386	512	1.48e0	SMART
Pfam:PDEase_I	526	598	5.3e-21	PFAM
low complexity region	625	636	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110095
AA Change: V34L

PolyPhen 2 Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000105722
Gene: ENSMUSG00000031842
AA Change: V34L

Domain	Start	End	E-Value	Type
low complexity region	40	56	N/A	INTRINSIC
HDc	386	561	5.11e-6	SMART
low complexity region	659	670	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000123739
AA Change: V34L

PolyPhen 2 Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000119312
Gene: ENSMUSG00000031842
AA Change: V34L

Domain	Start	End	E-Value	Type
low complexity region	40	56	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000179347

SMART Domains

Protein: ENSMUSP00000136399
Gene: ENSMUSG00000095026

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
low complexity region	45	71	N/A	INTRINSIC
low complexity region	103	114	N/A	INTRINSIC
transmembrane domain	143	165	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000213065

Coding Region Coverage

1x: 100.0%
3x: 99.8%
10x: 98.9%
20x: 95.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the cyclic nucleotide phosphodiesterase (PDE) family, and PDE4 subfamily. This PDE hydrolyzes the second messenger, cAMP, which is a regulator and mediator of a number of cellular responses to extracellular signals. Thus, by regulating the cellular concentration of cAMP, this protein plays a key role in many important physiological processes. Alternatively spliced transcript variants encoding different isoforms have been described for this gene.[provided by RefSeq, Jul 2011]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb5	A	T	12: 118,895,651 (GRCm39)	C382S	probably benign	Het
Abcf2	A	G	5: 24,776,191 (GRCm39)	V296A	possibly damaging	Het
Aco2	C	G	15: 81,756,620 (GRCm39)		probably benign	Het
Acvrl1	A	G	15: 101,039,011 (GRCm39)	D436G	possibly damaging	Het
Adamts7	A	G	9: 90,056,692 (GRCm39)	I254V		Het
Arhgef18	A	G	8: 3,503,257 (GRCm39)	I888V	probably benign	Het
Arhgef40	C	A	14: 52,235,072 (GRCm39)	A1083D	probably damaging	Het
Arnt2	C	A	7: 83,954,059 (GRCm39)	A275S	probably benign	Het
Brd10	A	T	19: 29,731,900 (GRCm39)	Y371N	possibly damaging	Het
Brip1	C	T	11: 86,080,599 (GRCm39)	V156I	probably benign	Het
Camk4	C	A	18: 33,291,953 (GRCm39)	C204*	probably null	Het
Cenpe	A	G	3: 134,923,797 (GRCm39)	T161A	probably benign	Het
Chd2	G	A	7: 73,105,358 (GRCm39)	H1256Y	probably damaging	Het
Chd9	G	A	8: 91,716,233 (GRCm39)	V936I	unknown	Het
D6Ertd527e	A	G	6: 87,089,233 (GRCm39)	*465W	probably null	Het
Dcaf11	T	A	14: 55,803,114 (GRCm39)	D309E	probably damaging	Het
Dtna	A	G	18: 23,743,553 (GRCm39)	N373S	probably benign	Het
Eif2b2	A	G	12: 85,266,897 (GRCm39)	D104G	probably benign	Het
Fras1	A	T	5: 96,874,742 (GRCm39)	T2302S	probably benign	Het
Gga1	A	G	15: 78,768,321 (GRCm39)	K114E	probably damaging	Het
Gm12887	A	G	4: 121,473,616 (GRCm39)		probably null	Het
Gss	A	T	2: 155,406,794 (GRCm39)	I396N		Het
H2-M5	T	C	17: 37,299,422 (GRCm39)	I199M	possibly damaging	Het
Hjurp	GT	GTT	1: 88,194,246 (GRCm39)		probably null	Het
Ift172	G	T	5: 31,441,399 (GRCm39)	T245K	possibly damaging	Het
Ift70a2	G	A	2: 75,808,215 (GRCm39)	T99I	probably benign	Het
Iqck	A	G	7: 118,498,881 (GRCm39)	D173G	probably damaging	Het
Itga11	A	G	9: 62,675,039 (GRCm39)	N857S	possibly damaging	Het
Kdm1b	C	A	13: 47,202,770 (GRCm39)	S68R	probably benign	Het
Ly6c1	C	A	15: 74,917,300 (GRCm39)	G116V	probably damaging	Het
Myo6	G	T	9: 80,162,285 (GRCm39)	V341L	unknown	Het
Nfkbie	C	A	17: 45,870,183 (GRCm39)	A176E	probably damaging	Het
Nlrp2	C	T	7: 5,330,478 (GRCm39)	M639I	probably benign	Het
Or10g3	T	A	14: 52,609,716 (GRCm39)	S265C	probably damaging	Het
Or10j2	T	A	1: 173,098,147 (GRCm39)	I135N	possibly damaging	Het
Or56a41	T	C	7: 104,740,433 (GRCm39)	I138V	probably benign	Het
Or5w16	A	G	2: 87,577,125 (GRCm39)	N195S	probably damaging	Het
Or6c215	T	C	10: 129,637,564 (GRCm39)	T277A	probably damaging	Het
Or8k40	A	T	2: 86,584,354 (GRCm39)	S243T	probably damaging	Het
Pak4	G	A	7: 28,264,263 (GRCm39)	T213M	probably damaging	Het
Pan2	C	T	10: 128,153,810 (GRCm39)	Q1003*	probably null	Het
Pi4k2a	G	A	19: 42,089,235 (GRCm39)	V199M	probably damaging	Het
Platr25	T	C	13: 62,848,007 (GRCm39)	E285G	probably damaging	Het
Polr3e	T	C	7: 120,536,906 (GRCm39)	V356A	possibly damaging	Het
Prcp	A	G	7: 92,567,017 (GRCm39)	D243G	probably benign	Het
Qsox2	T	C	2: 26,115,246 (GRCm39)	T161A	probably damaging	Het
Rhoj	A	G	12: 75,355,700 (GRCm39)	T35A		Het
Scn9a	T	A	2: 66,325,147 (GRCm39)	M1336L	probably damaging	Het
Sel1l2	G	T	2: 140,117,384 (GRCm39)	N162K	probably damaging	Het
Slc15a3	T	C	19: 10,820,866 (GRCm39)	L161P	probably damaging	Het
Slc4a11	G	A	2: 130,533,663 (GRCm39)	A100V	probably damaging	Het
Sp1	A	G	15: 102,316,320 (GRCm39)	S41G	probably benign	Het
Tbx15	A	G	3: 99,222,085 (GRCm39)	M183V	probably benign	Het
Tfip11	A	G	5: 112,481,214 (GRCm39)	T397A	possibly damaging	Het
Themis	T	C	10: 28,657,749 (GRCm39)	S259P	probably damaging	Het
Tm7sf2	T	C	19: 6,117,172 (GRCm39)	Y77C	probably damaging	Het
Tnnt2	C	A	1: 135,774,484 (GRCm39)	P81H	possibly damaging	Het
Trpc7	T	C	13: 57,035,886 (GRCm39)	T16A	probably benign	Het
Ttn	T	A	2: 76,745,056 (GRCm39)	Y5331F	possibly damaging	Het
Virma	A	G	4: 11,526,922 (GRCm39)	Q1057R	possibly damaging	Het
Vmn2r118	A	T	17: 55,918,649 (GRCm39)	F81Y	probably damaging	Het
Vmn2r88	T	C	14: 51,651,490 (GRCm39)	V268A		Het
Vmn2r93	T	A	17: 18,524,471 (GRCm39)	M155K	probably benign	Het
Vps13b	G	T	15: 35,875,931 (GRCm39)	C2772F	possibly damaging	Het
Wdr90	T	C	17: 26,076,200 (GRCm39)	N86D		Het
Zbtb34	T	C	2: 33,301,248 (GRCm39)	D431G	probably damaging	Het
Zc3h3	G	A	15: 75,711,237 (GRCm39)	P408L	probably benign	Het
Zfp345	A	G	2: 150,313,864 (GRCm39)	Y558H	probably benign	Het
Zfp583	G	A	7: 6,319,543 (GRCm39)	P490S	probably damaging	Het

Other mutations in Pde4c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01938:Pde4c	APN	8	71,202,027 (GRCm39)	missense	probably damaging	1.00
IGL02052:Pde4c	APN	8	71,201,062 (GRCm39)	missense	probably damaging	0.99
IGL02484:Pde4c	APN	8	71,200,701 (GRCm39)	splice site	probably benign
IGL02567:Pde4c	APN	8	71,200,570 (GRCm39)	missense	probably benign	0.11
IGL03355:Pde4c	APN	8	71,199,244 (GRCm39)	missense	probably damaging	1.00
coffee	UTSW	8	71,197,978 (GRCm39)	missense	probably damaging	0.99
tea	UTSW	8	71,201,621 (GRCm39)	missense	possibly damaging	0.67
R0396:Pde4c	UTSW	8	71,202,725 (GRCm39)	missense	probably benign
R1103:Pde4c	UTSW	8	71,201,066 (GRCm39)	missense	probably damaging	1.00
R1161:Pde4c	UTSW	8	71,202,572 (GRCm39)	missense	possibly damaging	0.90
R1310:Pde4c	UTSW	8	71,202,572 (GRCm39)	missense	possibly damaging	0.90
R1420:Pde4c	UTSW	8	71,201,066 (GRCm39)	missense	probably damaging	1.00
R1456:Pde4c	UTSW	8	71,199,262 (GRCm39)	missense	probably benign	0.42
R1586:Pde4c	UTSW	8	71,199,508 (GRCm39)	missense	probably damaging	1.00
R1817:Pde4c	UTSW	8	71,179,638 (GRCm39)	missense	probably benign
R1818:Pde4c	UTSW	8	71,179,638 (GRCm39)	missense	probably benign
R1843:Pde4c	UTSW	8	71,200,599 (GRCm39)	missense	probably damaging	1.00
R1984:Pde4c	UTSW	8	71,177,191 (GRCm39)	missense	probably damaging	1.00
R2001:Pde4c	UTSW	8	71,200,007 (GRCm39)	splice site	probably null
R2088:Pde4c	UTSW	8	71,202,005 (GRCm39)	missense	possibly damaging	0.88
R4334:Pde4c	UTSW	8	71,202,475 (GRCm39)	splice site	probably null
R5369:Pde4c	UTSW	8	71,202,754 (GRCm39)	makesense	probably null
R5521:Pde4c	UTSW	8	71,200,031 (GRCm39)	critical splice donor site	probably null
R6168:Pde4c	UTSW	8	71,202,688 (GRCm39)	missense	probably benign	0.01
R6749:Pde4c	UTSW	8	71,198,659 (GRCm39)	missense	probably damaging	1.00
R7197:Pde4c	UTSW	8	71,197,978 (GRCm39)	missense	probably damaging	0.99
R7426:Pde4c	UTSW	8	71,201,621 (GRCm39)	missense	possibly damaging	0.67
R9004:Pde4c	UTSW	8	71,199,515 (GRCm39)	missense	possibly damaging	0.66
R9134:Pde4c	UTSW	8	71,201,160 (GRCm39)	missense	probably damaging	1.00
R9584:Pde4c	UTSW	8	71,200,728 (GRCm39)	missense	probably benign	0.25
R9707:Pde4c	UTSW	8	71,202,701 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CACACACGTGAGGACAGTAG -3'
(R):5'- CCTACGTTCCAGAAATGAGTGC -3'

Sequencing Primer
(F):5'- CAGTAGGGAAGCCGGGC -3'
(R):5'- AGAGACTTTGGCCACATCTG -3'

Posted On

2021-11-19