Mutagenetix > Incidental Mutation

Incidental Mutation 'R9057:Sars2'

688742

Institutional Source

Beutler Lab

Gene Symbol

Sars2

Ensembl Gene

ENSMUSG00000070699

Gene Name

seryl-aminoacyl-tRNA synthetase 2

Synonyms

D7Ertd353e, 2410015F05Rik

MMRRC Submission

068883-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.868) question?

Stock #

R9057 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

28441417-28453296 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 28446246 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Histidine at position 158 (Q158H)

Ref Sequence

ENSEMBL: ENSMUSP00000092216 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000094632] [ENSMUST00000207877]

AlphaFold

Q9JJL8

Predicted Effect

SMART Domains

Protein: ENSMUSP00000092216
Gene: ENSMUSG00000070699
AA Change: Q158H

Domain	Start	End	E-Value	Type
Pfam:Seryl_tRNA_N	58	174	3.8e-8	PFAM
Pfam:tRNA-synt_2b	284	468	5.2e-24	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000207877

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

100% (63/63)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the mitochondrial seryl-tRNA synthethase precursor, a member of the class II tRNA synthetase family. The mature enzyme catalyzes the ligation of Serine to tRNA(Ser) and participates in the biosynthesis of selenocysteinyl-tRNA(sec) in mitochondria. The enzyme contains an N-terminal tRNA binding domain and a core catalytic domain. It functions in a homodimeric form, which is stabilized by tRNA binding. This gene is regulated by a bidirectional promoter that also controls the expression of mitochondrial ribosomal protein S12. Both genes are within the critical interval for the autosomal dominant deafness locus DFNA4 and might be linked to this disease. Multiple transcript variants encoding different isoforms have been identified for this gene. [provided by RefSeq, Mar 2009]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aagab	T	A	9: 63,524,782 (GRCm39)		probably benign	Het
Abca2	G	A	2: 25,331,584 (GRCm39)	D1324N	probably benign	Het
Acat1	C	T	9: 53,503,300 (GRCm39)	G180R	probably damaging	Het
AI837181	A	C	19: 5,476,730 (GRCm39)	T298P	probably damaging	Het
Alms1	T	A	6: 85,586,814 (GRCm39)	D556E	unknown	Het
Ankle1	T	A	8: 71,858,961 (GRCm39)	W65R	probably benign	Het
Ano5	A	G	7: 51,203,654 (GRCm39)	N234S	probably benign	Het
Asb7	T	A	7: 66,309,395 (GRCm39)		probably benign	Het
Atad2b	T	A	12: 5,068,102 (GRCm39)	C1033*	probably null	Het
B4galnt1	A	G	10: 127,006,999 (GRCm39)	D452G	probably damaging	Het
B4gat1	G	T	19: 5,089,056 (GRCm39)	A18S	possibly damaging	Het
Bard1	A	G	1: 71,069,807 (GRCm39)	Y724H	probably damaging	Het
Bcl9	A	T	3: 97,112,306 (GRCm39)	M1383K	possibly damaging	Het
Cenpt	C	A	8: 106,576,405 (GRCm39)	*43L	probably null	Het
Ces2f	C	A	8: 105,674,744 (GRCm39)	H49N	probably benign	Het
Col17a1	A	T	19: 47,637,522 (GRCm39)	D1245E	probably damaging	Het
Col19a1	G	T	1: 24,549,962 (GRCm39)	H312N	unknown	Het
Cyb5d2	C	T	11: 72,679,924 (GRCm39)	E124K	probably benign	Het
Dnah5	C	T	15: 28,391,014 (GRCm39)	A3291V	probably damaging	Het
Exo5	A	T	4: 120,779,186 (GRCm39)	D226E	probably damaging	Het
Ggt6	C	T	11: 72,328,067 (GRCm39)	T189M	probably damaging	Het
Gm5592	C	A	7: 40,938,887 (GRCm39)	S723Y	possibly damaging	Het
Golga3	C	T	5: 110,332,465 (GRCm39)	T133M	probably damaging	Het
Heatr5a	C	T	12: 51,986,420 (GRCm39)	E598K	probably damaging	Het
Hfe	T	A	13: 23,889,658 (GRCm39)	I330F	possibly damaging	Het
Htt	A	G	5: 35,009,454 (GRCm39)	I1478M	possibly damaging	Het
Igf1r	T	C	7: 67,833,186 (GRCm39)	F449L	probably damaging	Het
Ints4	T	C	7: 97,158,987 (GRCm39)	V453A	possibly damaging	Het
Ints6	A	G	14: 62,951,740 (GRCm39)		probably null	Het
Klrh1	T	A	6: 129,752,803 (GRCm39)	M1L	probably benign	Het
Kpna4	G	A	3: 69,002,018 (GRCm39)	T248M	probably damaging	Het
Lactb	T	C	9: 66,874,977 (GRCm39)	I372V	possibly damaging	Het
Mib1	T	A	18: 10,795,728 (GRCm39)	D696E	possibly damaging	Het
Mpzl3	G	A	9: 44,979,592 (GRCm39)	R181Q	probably damaging	Het
Mup12	A	T	4: 60,696,779 (GRCm39)	I33N	probably damaging	Het
Myh10	A	G	11: 68,656,011 (GRCm39)	I502V	possibly damaging	Het
Nacad	C	A	11: 6,550,876 (GRCm39)	V772F	possibly damaging	Het
Nbeal2	G	T	9: 110,456,218 (GRCm39)	T2417N	probably benign	Het
Nif3l1	A	G	1: 58,489,648 (GRCm39)	D179G	probably benign	Het
Or2ag17	A	T	7: 106,389,296 (GRCm39)	V304D	probably damaging	Het
Or6e1	T	C	14: 54,520,148 (GRCm39)	E68G	probably damaging	Het
Pan2	A	T	10: 128,156,141 (GRCm39)	H1133L	probably damaging	Het
Pgk2	A	G	17: 40,518,735 (GRCm39)	V231A	possibly damaging	Het
Psmd12	G	A	11: 107,377,328 (GRCm39)	R129Q	probably null	Het
Rpl23a	G	A	11: 78,072,021 (GRCm39)	R139C	probably benign	Het
Scd3	C	T	19: 44,224,340 (GRCm39)	P191L	probably damaging	Het
Serac1	C	A	17: 6,111,890 (GRCm39)	S262I	probably damaging	Het
Sh3bp1	A	G	15: 78,794,209 (GRCm39)	T526A	probably benign	Het
Slc26a3	A	T	12: 31,520,958 (GRCm39)	T721S	probably benign	Het
Slc8a1	A	C	17: 81,955,479 (GRCm39)	S520A	probably benign	Het
Sp9	A	T	2: 73,103,613 (GRCm39)	S56C	probably damaging	Het
Spire2	T	A	8: 124,095,547 (GRCm39)		probably benign	Het
Syne2	T	G	12: 75,937,167 (GRCm39)	L255R	probably damaging	Het
Tcp11l1	A	G	2: 104,528,026 (GRCm39)	I156T	probably damaging	Het
Tnrc6b	G	A	15: 80,763,349 (GRCm39)	A284T	probably benign	Het
Trappc14	A	T	5: 138,260,949 (GRCm39)	V232E	probably damaging	Het
Tsc1	T	A	2: 28,575,874 (GRCm39)	L919H	probably damaging	Het
Vps13c	T	A	9: 67,828,209 (GRCm39)	H1454Q	probably benign	Het
Vps41	T	A	13: 19,027,702 (GRCm39)	D537E	probably benign	Het
Wnt16	T	A	6: 22,288,823 (GRCm39)	C47S	probably damaging	Het
Zfhx2	C	T	14: 55,310,027 (GRCm39)	E840K	possibly damaging	Het
Zfp61	A	T	7: 23,990,702 (GRCm39)	V483E	probably benign	Het
Zfp870	A	T	17: 33,102,793 (GRCm39)	S179T	probably benign	Het

Other mutations in Sars2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00907:Sars2	APN	7	28,452,848 (GRCm39)	unclassified	probably benign
IGL01376:Sars2	APN	7	28,449,308 (GRCm39)	missense	probably damaging	1.00
IGL01633:Sars2	APN	7	28,446,974 (GRCm39)	missense	probably benign	0.02
IGL02121:Sars2	APN	7	28,451,950 (GRCm39)	unclassified	probably benign
IGL02488:Sars2	APN	7	28,441,585 (GRCm39)	nonsense	probably null
IGL03062:Sars2	APN	7	28,446,206 (GRCm39)	missense	possibly damaging	0.89
R1601:Sars2	UTSW	7	28,448,396 (GRCm39)	missense	probably benign	0.26
R1857:Sars2	UTSW	7	28,449,437 (GRCm39)	missense	probably benign	0.00
R1859:Sars2	UTSW	7	28,443,737 (GRCm39)	missense	probably damaging	0.99
R2193:Sars2	UTSW	7	28,448,422 (GRCm39)	missense	probably damaging	0.96
R2204:Sars2	UTSW	7	28,449,099 (GRCm39)	missense	possibly damaging	0.95
R4452:Sars2	UTSW	7	28,449,518 (GRCm39)	missense	probably benign	0.08
R4514:Sars2	UTSW	7	28,441,709 (GRCm39)	critical splice donor site	probably null
R4921:Sars2	UTSW	7	28,451,863 (GRCm39)	missense	possibly damaging	0.81
R5121:Sars2	UTSW	7	28,447,333 (GRCm39)	missense	probably damaging	0.99
R5434:Sars2	UTSW	7	28,449,716 (GRCm39)	missense	probably null	1.00
R5849:Sars2	UTSW	7	28,443,683 (GRCm39)	missense	possibly damaging	0.92
R6668:Sars2	UTSW	7	28,446,429 (GRCm39)	missense	probably benign	0.01
R7123:Sars2	UTSW	7	28,452,866 (GRCm39)	missense	probably benign	0.40
R7205:Sars2	UTSW	7	28,443,733 (GRCm39)	missense	probably benign
R7677:Sars2	UTSW	7	28,446,176 (GRCm39)	missense	probably benign	0.07
R7902:Sars2	UTSW	7	28,441,628 (GRCm39)	missense	probably benign	0.29
R8084:Sars2	UTSW	7	28,449,710 (GRCm39)	missense	probably damaging	1.00
R8320:Sars2	UTSW	7	28,446,293 (GRCm39)	missense	probably damaging	1.00
R9350:Sars2	UTSW	7	28,447,273 (GRCm39)	missense	probably damaging	1.00
R9461:Sars2	UTSW	7	28,449,438 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TGATCTTGCCAAACTGAGAGG -3'
(R):5'- GGTGTGACTTACCCGGCTTTTC -3'

Sequencing Primer
(F):5'- AAAGAAATGGTGGGTGTTTCCATG -3'
(R):5'- GGCTTTTCACCCACCACACG -3'

Posted On

2021-11-19