Mutagenetix > Incidental Mutation

Incidental Mutation 'R9058:Grep1'

688849

Institutional Source

Beutler Lab

Gene Symbol

Grep1

Ensembl Gene

ENSMUSG00000043747

Gene Name

glycine rich extracellular protein 1

Synonyms

1520401A03Rik

MMRRC Submission

068884-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R9058 (G1)

Quality Score

153.008

Status

Not validated

Chromosome

Chromosomal Location

23923462-23941757 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 23935016 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 63 (N63S)

Ref Sequence

ENSEMBL: ENSMUSP00000144253 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000178006] [ENSMUST00000201734]

AlphaFold

A0A0J9YVH6

Predicted Effect

probably benign
Transcript: ENSMUST00000178006
AA Change: N63S

PolyPhen 2 Score 0.051 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000144253
Gene: ENSMUSG00000043747
AA Change: N63S

Domain	Start	End	E-Value	Type
low complexity region	3	16	N/A	INTRINSIC
low complexity region	18	47	N/A	INTRINSIC
internal_repeat_1	49	75	7.63e-5	PROSPERO
low complexity region	82	99	N/A	INTRINSIC
internal_repeat_1	101	132	7.63e-5	PROSPERO
low complexity region	133	164	N/A	INTRINSIC
low complexity region	174	196	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000201734
AA Change: N132S

PolyPhen 2 Score 0.051 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000144664
Gene: ENSMUSG00000043747
AA Change: N132S

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
low complexity region	61	69	N/A	INTRINSIC
low complexity region	72	85	N/A	INTRINSIC
low complexity region	87	116	N/A	INTRINSIC
internal_repeat_1	117	149	3.72e-8	PROSPERO
low complexity region	151	168	N/A	INTRINSIC
low complexity region	202	233	N/A	INTRINSIC
low complexity region	238	258	N/A	INTRINSIC
internal_repeat_1	268	310	3.72e-8	PROSPERO
low complexity region	518	528	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acox1	T	C	11: 116,080,268 (GRCm39)	T135A	possibly damaging	Het
Adrm1b	A	T	3: 92,335,559 (GRCm39)	M283K	probably benign	Het
Aldh8a1	T	C	10: 21,258,344 (GRCm39)	I147T	possibly damaging	Het
Alkbh5	T	C	11: 60,444,548 (GRCm39)	L288S	probably benign	Het
Bpifb5	A	G	2: 154,080,817 (GRCm39)	D478G	possibly damaging	Het
Cacna1s	A	T	1: 135,998,436 (GRCm39)	K155*	probably null	Het
Ccser1	T	C	6: 61,350,976 (GRCm39)	L511P	probably damaging	Het
Cebpz	A	T	17: 79,243,227 (GRCm39)	N142K	probably benign	Het
Cfap299	A	T	5: 98,932,400 (GRCm39)	D200V	probably damaging	Het
Clip1	G	T	5: 123,752,645 (GRCm39)	R379S		Het
Cpne8	T	A	15: 90,381,276 (GRCm39)	I513F	probably damaging	Het
Ctnnb1	T	A	9: 120,780,476 (GRCm39)	C213*	probably null	Het
Dnah7b	A	G	1: 46,282,575 (GRCm39)	K2903E	probably damaging	Het
Dnah7c	G	T	1: 46,805,816 (GRCm39)	G3422W	probably damaging	Het
Dnhd1	T	A	7: 105,333,270 (GRCm39)	H247Q	probably benign	Het
Efna2	A	G	10: 80,022,720 (GRCm39)	Y88C	probably damaging	Het
Eppk1	C	T	15: 75,992,265 (GRCm39)	G1539R	probably benign	Het
Exoc3l2	A	T	7: 19,203,821 (GRCm39)	K138*	probably null	Het
Fam47e	A	G	5: 92,719,367 (GRCm39)		probably benign	Het
Frmpd1	T	A	4: 45,283,948 (GRCm39)	M923K	probably damaging	Het
Gbe1	A	G	16: 70,324,059 (GRCm39)	E558G	possibly damaging	Het
Gm5431	T	C	11: 48,786,049 (GRCm39)	T109A	probably benign	Het
Gm9508	G	A	10: 77,532,620 (GRCm39)	P150S	unknown	Het
Hps4	G	A	5: 112,525,905 (GRCm39)	S642N	possibly damaging	Het
Hrob	T	C	11: 102,146,386 (GRCm39)	S221P	probably benign	Het
Hsfy2	A	T	1: 56,676,504 (GRCm39)	V11D	probably benign	Het
Kif13a	T	C	13: 46,944,941 (GRCm39)	N887D	probably damaging	Het
Kirrel1	A	G	3: 86,992,442 (GRCm39)	V541A	probably benign	Het
Klk15	C	T	7: 43,587,790 (GRCm39)	H73Y	possibly damaging	Het
Lamc3	G	A	2: 31,798,653 (GRCm39)	R453H	probably benign	Het
Mideas	A	G	12: 84,220,642 (GRCm39)	M104T	probably damaging	Het
Muc6	G	C	7: 141,218,154 (GRCm39)	T2173S	possibly damaging	Het
Neb	T	C	2: 52,075,341 (GRCm39)	N208S	probably benign	Het
Nlrc5	A	T	8: 95,238,938 (GRCm39)	T1459S	possibly damaging	Het
Npy1r	T	C	8: 67,156,600 (GRCm39)	S7P	probably benign	Het
Nr4a2	T	C	2: 57,002,255 (GRCm39)	N66S	probably benign	Het
Nr5a1	T	C	2: 38,584,034 (GRCm39)	T462A	probably damaging	Het
Ntng2	A	G	2: 29,094,202 (GRCm39)	C390R	probably benign	Het
Or4p23	A	C	2: 88,577,030 (GRCm39)	D67E		Het
Or5b119	G	A	19: 13,456,956 (GRCm39)	T202I	possibly damaging	Het
Or7g12	T	A	9: 18,900,222 (GRCm39)	*313R	probably null	Het
Pecam1	G	T	11: 106,590,675 (GRCm39)	P33Q	probably damaging	Het
Phc2	T	A	4: 128,616,769 (GRCm39)	F347L	probably benign	Het
Phldb2	T	A	16: 45,592,604 (GRCm39)	H938L	possibly damaging	Het
Pkd1l3	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	8: 110,350,827 (GRCm39)		probably benign	Het
Prkch	G	T	12: 73,822,308 (GRCm39)		probably null	Het
Prr5	A	G	15: 84,641,241 (GRCm39)	N169S	probably benign	Het
Puf60	C	T	15: 75,942,425 (GRCm39)	D483N	probably benign	Het
Puf60	C	T	15: 75,944,382 (GRCm39)	M133I	probably benign	Het
Rmnd1	T	C	10: 4,363,398 (GRCm39)	H284R	probably benign	Het
Scaper	T	C	9: 55,722,762 (GRCm39)	E682G	probably damaging	Het
Sds	A	G	5: 120,618,779 (GRCm39)	E111G	possibly damaging	Het
Sec23b	T	A	2: 144,424,010 (GRCm39)	I553N	probably damaging	Het
Serpina1a	A	T	12: 103,820,001 (GRCm39)	I415K	possibly damaging	Het
Slc14a1	T	A	18: 78,145,785 (GRCm39)		probably null	Het
Socs1	G	A	16: 10,602,692 (GRCm39)	P15L	probably benign	Het
Sv2b	A	T	7: 74,789,822 (GRCm39)		probably null	Het
Sync	T	C	4: 129,187,217 (GRCm39)	I83T	probably damaging	Het
Syt16	T	A	12: 74,282,019 (GRCm39)	L381Q	probably damaging	Het
Tbx20	T	C	9: 24,681,019 (GRCm39)	R158G	probably damaging	Het
Tmco1	C	T	1: 167,136,132 (GRCm39)		probably benign	Het
Tmem19	C	A	10: 115,198,031 (GRCm39)		probably benign	Het
Trpa1	A	C	1: 14,959,618 (GRCm39)	N689K	probably damaging	Het
Ube3b	C	A	5: 114,553,300 (GRCm39)	H891N	probably benign	Het
Vmn2r19	T	A	6: 123,313,021 (GRCm39)	M697K	possibly damaging	Het
Zfp142	A	T	1: 74,608,955 (GRCm39)	C1613*	probably null	Het
Zfp7	T	A	15: 76,764,981 (GRCm39)	M1K	probably null	Het
Zfp936	A	T	7: 42,839,196 (GRCm39)	Q221L	probably benign	Het

Other mutations in Grep1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0332:Grep1	UTSW	17	23,933,578 (GRCm39)	splice site	probably benign
R1165:Grep1	UTSW	17	23,929,489 (GRCm39)	splice site	probably benign
R1539:Grep1	UTSW	17	23,936,118 (GRCm39)	splice site	probably benign
R2968:Grep1	UTSW	17	23,934,785 (GRCm39)	missense	possibly damaging	0.90
R5459:Grep1	UTSW	17	23,930,817 (GRCm39)	intron	probably benign
R5800:Grep1	UTSW	17	23,936,966 (GRCm39)	missense	probably damaging	0.96
R5967:Grep1	UTSW	17	23,931,332 (GRCm39)	missense	probably damaging	1.00
R6246:Grep1	UTSW	17	23,929,465 (GRCm39)	nonsense	probably null
R6306:Grep1	UTSW	17	23,925,124 (GRCm39)	missense	possibly damaging	0.66
R6892:Grep1	UTSW	17	23,931,328 (GRCm39)	missense	probably damaging	0.97
R7126:Grep1	UTSW	17	23,939,538 (GRCm39)	missense	probably benign	0.23
R7264:Grep1	UTSW	17	23,931,308 (GRCm39)	missense	not run
R7563:Grep1	UTSW	17	23,936,302 (GRCm39)	missense	probably benign	0.27
R9323:Grep1	UTSW	17	23,937,387 (GRCm39)	missense	unknown
R9451:Grep1	UTSW	17	23,936,187 (GRCm39)	missense	unknown
Z1176:Grep1	UTSW	17	23,934,737 (GRCm39)	missense	possibly damaging	0.81

Predicted Primers

PCR Primer
(F):5'- TTCCCATTGCTGAACCCTGG -3'
(R):5'- TGGAGTACACATGTCTATAACCTGC -3'

Sequencing Primer
(F):5'- ATTGCTGAACCCTGGGAGAC -3'
(R):5'- GTACACATGTCTATAACCTGCTTTCC -3'

Posted On

2021-11-19