Mutagenetix > Incidental Mutation

Incidental Mutation 'R9069:Spopfm1'

689413

Institutional Source

Beutler Lab

Gene Symbol

Spopfm1

Ensembl Gene

ENSMUSG00000089696

Gene Name

speckle-type BTB/POZ protein family member 1

Synonyms

Gm4778

MMRRC Submission

Accession Numbers

Essential gene?

Probably essential (E-score: 0.870) question?

Stock #

R9069 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

94171343-94174091 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 94173153 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Arginine at position 50 (S50R)

Ref Sequence

ENSEMBL: ENSMUSP00000123868 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098878] [ENSMUST00000159517]

AlphaFold

L7N229

Predicted Effect

probably damaging
Transcript: ENSMUST00000098878
AA Change: S54R

PolyPhen 2 Score 0.981 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000096477
Gene: ENSMUSG00000089696
AA Change: S54R

Domain	Start	End	E-Value	Type
MATH	25	134	6.01e-8	SMART
BTB	192	291	7.66e-26	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000159517
AA Change: S50R

PolyPhen 2 Score 0.929 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000123868
Gene: ENSMUSG00000089696
AA Change: S50R

Domain	Start	End	E-Value	Type
MATH	21	130	6.01e-8	SMART
BTB	188	287	7.66e-26	SMART

Meta Mutation Damage Score

0.1712

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 98.9%

Validation Efficiency

100% (78/78)

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aars2	T	A	17: 45,818,523 (GRCm39)	C103S	probably damaging	Het
Adamts20	T	C	15: 94,236,349 (GRCm39)	S841G	probably benign	Het
Add3	T	A	19: 53,222,332 (GRCm39)	V313E	possibly damaging	Het
Ahr	G	T	12: 35,562,771 (GRCm39)		probably benign	Het
Ankrd12	T	A	17: 66,356,874 (GRCm39)	M48L	probably benign	Het
Apaf1	A	C	10: 90,859,580 (GRCm39)		probably null	Het
Bank1	T	C	3: 135,989,772 (GRCm39)	H106R	probably benign	Het
Birc6	A	G	17: 74,868,260 (GRCm39)		probably benign	Het
Castor1	A	G	11: 4,170,141 (GRCm39)	E73G	probably benign	Het
Ccdc170	C	T	10: 4,511,016 (GRCm39)	H692Y	possibly damaging	Het
Cd93	A	G	2: 148,284,071 (GRCm39)	I425T	probably benign	Het
Celsr1	A	C	15: 85,914,772 (GRCm39)	L1067R	possibly damaging	Het
Clca3a2	A	T	3: 144,519,447 (GRCm39)		probably benign	Het
Col14a1	T	C	15: 55,251,990 (GRCm39)	S549P	unknown	Het
Col6a4	A	G	9: 105,952,138 (GRCm39)	S587P	possibly damaging	Het
Crebbp	C	A	16: 3,903,187 (GRCm39)	M2017I	probably benign	Het
Crybg1	A	C	10: 43,874,103 (GRCm39)	F1002V	probably benign	Het
Ctif	T	C	18: 75,654,458 (GRCm39)	E356G	probably damaging	Het
Dbx2	T	C	15: 95,530,239 (GRCm39)	K243E	probably damaging	Het
Dgkh	C	T	14: 78,853,957 (GRCm39)	V394I	probably damaging	Het
Dnaja4	T	A	9: 54,621,638 (GRCm39)	M321K	probably benign	Het
Dock9	T	C	14: 121,866,324 (GRCm39)	N593S	probably damaging	Het
Dot1l	T	A	10: 80,626,560 (GRCm39)	S1260R	probably damaging	Het
Eea1	A	T	10: 95,831,510 (GRCm39)	L200F	probably damaging	Het
Elp2	T	G	18: 24,765,833 (GRCm39)	F658V	probably benign	Het
Fbxw15	G	A	9: 109,394,468 (GRCm39)	Q116*	probably null	Het
Fstl5	A	T	3: 76,615,416 (GRCm39)	N826Y	probably damaging	Het
Galp	T	C	7: 6,214,347 (GRCm39)	S60P	possibly damaging	Het
Gm7298	G	T	6: 121,761,393 (GRCm39)	M1316I	probably benign	Het
Gsdmc	T	C	15: 63,649,902 (GRCm39)	M330V	probably benign	Het
Hectd2	T	C	19: 36,562,862 (GRCm39)	F175L	probably benign	Het
Hmbs	A	G	9: 44,248,102 (GRCm39)	I318T	possibly damaging	Het
Ifi205	T	C	1: 173,855,841 (GRCm39)	D63G	probably benign	Het
Il10ra	T	A	9: 45,167,396 (GRCm39)	Q387L	probably damaging	Het
Kcnj14	C	A	7: 45,469,388 (GRCm39)	G39V	probably benign	Het
Kpna1	T	C	16: 35,836,381 (GRCm39)		probably benign	Het
Lrp2	A	T	2: 69,331,996 (GRCm39)	D1586E	probably damaging	Het
Lrrc45	A	G	11: 120,607,947 (GRCm39)	I243V	probably benign	Het
Lrrc7	T	C	3: 157,946,138 (GRCm39)	K187R	probably benign	Het
Mamdc4	G	T	2: 25,453,371 (GRCm39)	T1216N	probably damaging	Het
Map1a	A	C	2: 121,134,145 (GRCm39)	K1654Q	probably benign	Het
Mta2	G	A	19: 8,924,104 (GRCm39)	V195M	probably damaging	Het
Nav2	G	T	7: 49,208,561 (GRCm39)	R1583L	probably damaging	Het
Or2y1g	A	T	11: 49,171,247 (GRCm39)	T91S	probably benign	Het
Or4c112	A	T	2: 88,854,308 (GRCm39)	L13Q	probably damaging	Het
Or9i14	T	C	19: 13,792,735 (GRCm39)	Y73C	probably damaging	Het
Osbpl1a	T	A	18: 13,002,074 (GRCm39)		probably benign	Het
Pcdh17	T	C	14: 84,685,084 (GRCm39)	V517A	possibly damaging	Het
Pcdhb14	T	A	18: 37,583,157 (GRCm39)	C754*	probably null	Het
Pkd1	T	C	17: 24,791,988 (GRCm39)	V1225A	probably damaging	Het
Plekhm3	T	C	1: 64,960,802 (GRCm39)	N485D	probably benign	Het
Plekho1	A	C	3: 95,902,995 (GRCm39)	S14A	unknown	Het
Ppp2r3d	A	T	9: 101,090,006 (GRCm39)	C106S	probably benign	Het
Ppp6c	A	C	2: 39,094,928 (GRCm39)	L99R	probably damaging	Het
Pramel27	A	G	4: 143,578,345 (GRCm39)	S202G	probably benign	Het
Prkdc	T	A	16: 15,653,091 (GRCm39)	Y3855*	probably null	Het
Ptpru	A	T	4: 131,503,565 (GRCm39)	I1155N	possibly damaging	Het
Reln	C	T	5: 22,216,059 (GRCm39)	G1042D	probably damaging	Het
Sall4	A	G	2: 168,596,773 (GRCm39)	V689A	probably benign	Het
Sec31b	C	T	19: 44,507,741 (GRCm39)	G768S	probably damaging	Het
Serpinb10	T	A	1: 107,474,549 (GRCm39)	V237D	probably benign	Het
Serpinb9	T	G	13: 33,199,579 (GRCm39)	D291E	probably benign	Het
Slc12a7	T	G	13: 73,954,089 (GRCm39)		probably benign	Het
Slfn8	A	T	11: 82,907,902 (GRCm39)	F214I	probably damaging	Het
Slu7	A	T	11: 43,328,952 (GRCm39)	D58V	probably damaging	Het
Smu1	T	C	4: 40,745,558 (GRCm39)	Y254C	probably damaging	Het
Snapc4	A	T	2: 26,260,805 (GRCm39)	Y479*	probably null	Het
Specc1l	A	G	10: 75,066,640 (GRCm39)	N30D	probably benign	Het
Tbck	T	C	3: 132,428,130 (GRCm39)		probably null	Het
Tcf7l1	T	C	6: 72,610,259 (GRCm39)	Y246C	probably damaging	Het
Tmem43	C	T	6: 91,463,897 (GRCm39)	R391W	possibly damaging	Het
Trav7-1	T	G	14: 52,892,566 (GRCm39)	S40A	possibly damaging	Het
Trim45	T	A	3: 100,832,440 (GRCm39)	Y224*	probably null	Het
Trio	A	T	15: 27,852,097 (GRCm39)	I798N	possibly damaging	Het
Trnau1ap	A	T	4: 132,056,662 (GRCm39)		probably null	Het
Vmn1r213	T	C	13: 23,196,043 (GRCm39)	S209P	probably damaging	Het
Ythdf1	G	T	2: 180,552,857 (GRCm39)	R453S	probably damaging	Het

Other mutations in Spopfm1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01767:Spopfm1	APN	3	94,173,791 (GRCm39)	missense	probably benign	0.00
IGL02032:Spopfm1	APN	3	94,173,640 (GRCm39)	missense	probably damaging	1.00
IGL02694:Spopfm1	APN	3	94,173,459 (GRCm39)	missense	probably benign
IGL03171:Spopfm1	APN	3	94,173,762 (GRCm39)	missense	probably benign	0.00
R0195:Spopfm1	UTSW	3	94,173,229 (GRCm39)	missense	possibly damaging	0.79
R0739:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1064:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1149:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1149:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1150:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1152:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1284:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1286:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1287:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1349:Spopfm1	UTSW	3	94,173,435 (GRCm39)	missense	possibly damaging	0.94
R1358:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1372:Spopfm1	UTSW	3	94,173,435 (GRCm39)	missense	possibly damaging	0.94
R1383:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1399:Spopfm1	UTSW	3	94,173,102 (GRCm39)	missense	probably benign	0.17
R1756:Spopfm1	UTSW	3	94,173,525 (GRCm39)	missense	probably benign
R1996:Spopfm1	UTSW	3	94,173,018 (GRCm39)	missense	probably benign	0.00
R2679:Spopfm1	UTSW	3	94,173,217 (GRCm39)	missense	probably damaging	1.00
R2878:Spopfm1	UTSW	3	94,173,787 (GRCm39)	missense	possibly damaging	0.69
R5108:Spopfm1	UTSW	3	94,173,142 (GRCm39)	missense	probably damaging	1.00
R5706:Spopfm1	UTSW	3	94,173,959 (GRCm39)	missense	possibly damaging	0.91
R6251:Spopfm1	UTSW	3	94,173,208 (GRCm39)	missense	probably damaging	1.00
R6928:Spopfm1	UTSW	3	94,173,855 (GRCm39)	missense	probably benign	0.31
R7091:Spopfm1	UTSW	3	94,173,945 (GRCm39)	missense	probably damaging	1.00
R7264:Spopfm1	UTSW	3	94,173,045 (GRCm39)	missense	possibly damaging	0.86
R7503:Spopfm1	UTSW	3	94,173,780 (GRCm39)	missense	probably benign	0.29
R7595:Spopfm1	UTSW	3	94,173,985 (GRCm39)	missense	probably benign	0.00
R7867:Spopfm1	UTSW	3	94,173,154 (GRCm39)	missense	probably benign	0.25
R8338:Spopfm1	UTSW	3	94,173,285 (GRCm39)	missense	possibly damaging	0.83
R8525:Spopfm1	UTSW	3	94,173,862 (GRCm39)	missense	probably benign	0.33
R9239:Spopfm1	UTSW	3	94,173,871 (GRCm39)	missense	probably benign	0.31

Predicted Primers

PCR Primer
(F):5'- CCTTGAAACTACCTCCAGCAG -3'
(R):5'- GAGCCTATGTGGATTGGAGAA -3'

Sequencing Primer
(F):5'- TACCTCCAGCAGAAATGTCAGGG -3'
(R):5'- CGTAGGATAAACTTTTTGAATCCCC -3'

Posted On

2021-11-19