Mutagenetix > Incidental Mutation

Incidental Mutation 'R9076:Wdr6'

689802

Institutional Source

Beutler Lab

Gene Symbol

Wdr6

Ensembl Gene

ENSMUSG00000066357

Gene Name

WD repeat domain 6

Synonyms

MMRRC Submission

068897-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.286) question?

Stock #

R9076 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

108449510-108455862 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 108451627 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 752 (V752A)

Ref Sequence

ENSEMBL: ENSMUSP00000070927 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006853] [ENSMUST00000019183] [ENSMUST00000068700] [ENSMUST00000193427] [ENSMUST00000195249]

AlphaFold

Q99ME2

Predicted Effect

probably benign
Transcript: ENSMUST00000006853

SMART Domains

Protein: ENSMUSP00000006853
Gene: ENSMUSG00000006675

Domain	Start	End	E-Value	Type
transmembrane domain	61	83	N/A	INTRINSIC
P4Hc	143	460	1.26e-19	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000019183

SMART Domains

Protein: ENSMUSP00000019183
Gene: ENSMUSG00000019039

Domain	Start	End	E-Value	Type
low complexity region	288	301	N/A	INTRINSIC
low complexity region	386	397	N/A	INTRINSIC
DALR_1	399	538	2.09e-22	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000068700
AA Change: V752A

PolyPhen 2 Score 0.184 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000070927
Gene: ENSMUSG00000066357
AA Change: V752A

Domain	Start	End	E-Value	Type
Blast:WD40	109	142	3e-6	BLAST
WD40	198	237	1.42e-4	SMART
WD40	247	284	7.28e-2	SMART
WD40	286	326	1.72e-3	SMART
Blast:WD40	336	375	3e-13	BLAST
WD40	479	519	2.96e1	SMART
low complexity region	537	552	N/A	INTRINSIC
WD40	559	598	1.77e2	SMART
Blast:WD40	600	641	7e-20	BLAST
Blast:WD40	764	815	2e-22	BLAST
Blast:WD40	855	896	2e-11	BLAST
WD40	900	949	1.48e1	SMART
WD40	973	1015	5.52e-2	SMART
WD40	1035	1076	3.98e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000192518

Predicted Effect

probably benign
Transcript: ENSMUST00000193427

SMART Domains

Protein: ENSMUSP00000141748
Gene: ENSMUSG00000019039

Domain	Start	End	E-Value	Type
low complexity region	55	66	N/A	INTRINSIC
DALR_1	68	171	1.3e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000195249

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

99% (67/68)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. The encoded protein interacts with serine/threonine kinase 11, and is implicated in cell growth arrest. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Feb 2016]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy7	G	A	8: 89,054,336 (GRCm39)	G1064R	probably damaging	Het
Adcy9	A	G	16: 4,106,687 (GRCm39)	V1046A	probably damaging	Het
Adgrv1	C	T	13: 81,570,247 (GRCm39)		probably null	Het
Apbb2	A	C	5: 66,469,507 (GRCm39)	L554W	probably damaging	Het
Arhgef10	C	T	8: 15,024,993 (GRCm39)	P722S	probably damaging	Het
B3galt9	A	T	2: 34,729,209 (GRCm39)	Y336F	probably damaging	Het
Capns1	A	C	7: 29,893,510 (GRCm39)	M1R	probably null	Het
Chst1	C	T	2: 92,443,761 (GRCm39)	Q78*	probably null	Het
Clec12b	A	G	6: 129,356,580 (GRCm39)	S195P	possibly damaging	Het
Cog8	C	T	8: 107,779,208 (GRCm39)	M356I	probably damaging	Het
Cyp4b1	T	C	4: 115,482,424 (GRCm39)	N452D	probably damaging	Het
Defb40	A	T	8: 19,024,994 (GRCm39)	Y71N	probably benign	Het
Dhx8	G	T	11: 101,629,021 (GRCm39)	R190L		Het
Disp1	G	A	1: 182,868,799 (GRCm39)	T1207M	possibly damaging	Het
Dnah9	T	A	11: 66,008,464 (GRCm39)	Y787F	probably benign	Het
Egflam	T	C	15: 7,237,155 (GRCm39)	N1010D	probably damaging	Het
Fam151a	T	A	4: 106,603,254 (GRCm39)	Y272N	probably damaging	Het
Fat1	T	C	8: 45,492,938 (GRCm39)	Y3887H	probably damaging	Het
Fpr3	T	A	17: 18,191,725 (GRCm39)	I332N	probably benign	Het
Frmd4a	G	T	2: 4,608,765 (GRCm39)	G878W	probably damaging	Het
Fv1	T	C	4: 147,953,628 (GRCm39)	Y65H	possibly damaging	Het
Gabra6	G	A	11: 42,198,289 (GRCm39)	A387V	probably benign	Het
Gna11	T	C	10: 81,366,715 (GRCm39)	T332A		Het
Gpr161	T	A	1: 165,133,757 (GRCm39)	H6Q	possibly damaging	Het
Grin2b	CA	C	6: 135,709,509 (GRCm39)		probably null	Het
Heatr3	A	T	8: 88,876,827 (GRCm39)	M290L	probably benign	Het
Ifi47	T	G	11: 48,986,842 (GRCm39)	I203R	probably benign	Het
Ighv5-8	TATACAT	TAT	12: 113,618,583 (GRCm39)		probably benign	Het
Klhl10	A	G	11: 100,337,962 (GRCm39)	M234V	possibly damaging	Het
Klra4	A	G	6: 130,039,107 (GRCm39)	I95T	possibly damaging	Het
Krt84	A	G	15: 101,438,098 (GRCm39)	F286L	probably damaging	Het
Lrp2	A	G	2: 69,350,260 (GRCm39)	V704A	probably benign	Het
Lypd6b	A	T	2: 49,837,534 (GRCm39)	S169C	possibly damaging	Het
Mapk12	T	C	15: 89,024,611 (GRCm39)	E22G	probably benign	Het
Ncapg	T	C	5: 45,833,983 (GRCm39)	C340R	probably benign	Het
Ncor2	A	G	5: 125,111,086 (GRCm39)	L394P		Het
Nek1	T	G	8: 61,481,768 (GRCm39)	S228A	probably damaging	Het
Or2ak7	T	C	11: 58,574,722 (GRCm39)	C8R	probably benign	Het
Or2t29	A	T	11: 58,433,782 (GRCm39)	C186*	probably null	Het
Or2t44	T	A	11: 58,677,559 (GRCm39)	F166L	possibly damaging	Het
Or4c119	C	T	2: 88,986,719 (GRCm39)	E267K	possibly damaging	Het
Or56b1	C	T	7: 104,285,291 (GRCm39)	R137C	probably benign	Het
Pcdha8	C	A	18: 37,126,285 (GRCm39)	P256T	possibly damaging	Het
Pmm1	C	T	15: 81,839,896 (GRCm39)	R143H	probably damaging	Het
Ptprn	A	T	1: 75,229,018 (GRCm39)	M799K	probably damaging	Het
Rhpn2	A	T	7: 35,083,473 (GRCm39)		probably benign	Het
Sae1	A	G	7: 16,070,668 (GRCm39)	F281L	probably benign	Het
Slc25a23	A	G	17: 57,354,309 (GRCm39)	Y366H	probably benign	Het
Slc25a25	G	T	2: 32,309,175 (GRCm39)	T222K	probably damaging	Het
Smarca2	T	A	19: 26,659,452 (GRCm39)	F914Y	possibly damaging	Het
Spef2	C	A	15: 9,653,091 (GRCm39)	V897L	probably benign	Het
Spon2	C	A	5: 33,374,054 (GRCm39)	E110*	probably null	Het
Sstr2	A	G	11: 113,515,177 (GRCm39)	N32S	probably benign	Het
Stk4	T	C	2: 163,959,985 (GRCm39)	V415A	probably benign	Het
Tcaf1	T	G	6: 42,654,372 (GRCm39)	T607P	probably benign	Het
Ush1c	C	A	7: 45,850,480 (GRCm39)	L766F	probably damaging	Het
Usp9y	T	C	Y: 1,383,354 (GRCm39)	I795V	probably benign	Het
Vmn1r43	G	A	6: 89,846,877 (GRCm39)	T203M	probably damaging	Het
Vmn2r53	A	G	7: 12,340,231 (GRCm39)	S81P	probably damaging	Het
Vps45	A	G	3: 95,960,345 (GRCm39)		probably benign	Het
Xkr4	G	A	1: 3,286,358 (GRCm39)	R611*	probably null	Het
Zc3h6	T	G	2: 128,859,096 (GRCm39)	Y1042*	probably null	Het
Zfp236	A	G	18: 82,638,469 (GRCm39)	S1384P	possibly damaging	Het
Zfp800	A	T	6: 28,243,215 (GRCm39)	N583K	probably benign	Het
Zpld1	T	C	16: 55,061,764 (GRCm39)	S206G	probably benign	Het
Zxdc	T	A	6: 90,349,821 (GRCm39)	S372R	probably damaging	Het

Other mutations in Wdr6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01548:Wdr6	APN	9	108,452,096 (GRCm39)	missense	possibly damaging	0.77
IGL01757:Wdr6	APN	9	108,453,427 (GRCm39)	missense	possibly damaging	0.65
IGL02096:Wdr6	APN	9	108,453,752 (GRCm39)	missense	probably damaging	1.00
IGL02577:Wdr6	APN	9	108,453,140 (GRCm39)	missense	possibly damaging	0.88
IGL02625:Wdr6	APN	9	108,452,704 (GRCm39)	missense	probably damaging	1.00
IGL02820:Wdr6	APN	9	108,455,743 (GRCm39)	missense	probably benign	0.28
IGL03250:Wdr6	APN	9	108,450,396 (GRCm39)	missense	possibly damaging	0.95
PIT4802001:Wdr6	UTSW	9	108,451,765 (GRCm39)	missense	probably damaging	1.00
R0038:Wdr6	UTSW	9	108,450,168 (GRCm39)	missense	probably damaging	1.00
R0153:Wdr6	UTSW	9	108,452,441 (GRCm39)	missense	probably damaging	1.00
R0378:Wdr6	UTSW	9	108,453,063 (GRCm39)	missense	probably damaging	1.00
R0420:Wdr6	UTSW	9	108,450,300 (GRCm39)	missense	probably benign	0.41
R1620:Wdr6	UTSW	9	108,451,854 (GRCm39)	missense	possibly damaging	0.51
R1753:Wdr6	UTSW	9	108,452,363 (GRCm39)	missense	probably damaging	0.99
R1844:Wdr6	UTSW	9	108,453,176 (GRCm39)	missense	probably damaging	1.00
R1881:Wdr6	UTSW	9	108,450,378 (GRCm39)	splice site	probably null
R1987:Wdr6	UTSW	9	108,453,733 (GRCm39)	missense	probably damaging	1.00
R2029:Wdr6	UTSW	9	108,452,554 (GRCm39)	missense	probably damaging	1.00
R2139:Wdr6	UTSW	9	108,451,322 (GRCm39)	missense	probably benign	0.00
R3900:Wdr6	UTSW	9	108,452,968 (GRCm39)	missense	probably damaging	1.00
R4021:Wdr6	UTSW	9	108,452,405 (GRCm39)	missense	probably damaging	1.00
R4909:Wdr6	UTSW	9	108,450,187 (GRCm39)	missense	probably benign	0.28
R5073:Wdr6	UTSW	9	108,451,565 (GRCm39)	missense	probably damaging	1.00
R5748:Wdr6	UTSW	9	108,452,981 (GRCm39)	missense	possibly damaging	0.75
R6039:Wdr6	UTSW	9	108,450,994 (GRCm39)	frame shift	probably null
R6039:Wdr6	UTSW	9	108,450,994 (GRCm39)	frame shift	probably null
R6254:Wdr6	UTSW	9	108,452,110 (GRCm39)	missense	probably damaging	1.00
R6724:Wdr6	UTSW	9	108,452,093 (GRCm39)	missense	probably benign	0.11
R7134:Wdr6	UTSW	9	108,450,564 (GRCm39)	missense	probably damaging	1.00
R7248:Wdr6	UTSW	9	108,453,238 (GRCm39)	missense	possibly damaging	0.82
R7296:Wdr6	UTSW	9	108,451,784 (GRCm39)	missense	probably damaging	1.00
R7388:Wdr6	UTSW	9	108,451,971 (GRCm39)	missense	probably damaging	1.00
R7443:Wdr6	UTSW	9	108,451,489 (GRCm39)	missense	probably damaging	1.00
R7467:Wdr6	UTSW	9	108,450,201 (GRCm39)	missense	probably benign	0.14
R7672:Wdr6	UTSW	9	108,450,947 (GRCm39)	missense	probably benign	0.06
R7699:Wdr6	UTSW	9	108,453,560 (GRCm39)	missense	possibly damaging	0.92
R7700:Wdr6	UTSW	9	108,453,560 (GRCm39)	missense	possibly damaging	0.92
R8559:Wdr6	UTSW	9	108,452,593 (GRCm39)	missense	probably benign	0.34
R9273:Wdr6	UTSW	9	108,450,691 (GRCm39)	missense	probably benign	0.00
R9486:Wdr6	UTSW	9	108,453,182 (GRCm39)	missense	probably damaging	1.00
R9488:Wdr6	UTSW	9	108,453,182 (GRCm39)	missense	probably damaging	1.00
R9679:Wdr6	UTSW	9	108,450,358 (GRCm39)	missense	probably benign	0.27

Predicted Primers

PCR Primer
(F):5'- GAAGCAGTGAATCTCCGCTC -3'
(R):5'- ATGCTCTATCGGGCTCTAGGTG -3'

Sequencing Primer
(F):5'- TGAATCTCCGCTCGGCCC -3'
(R):5'- CCAATGTGATTCTCCGGGAG -3'

Posted On

2021-11-19