Mutagenetix > Incidental Mutation

Incidental Mutation 'R9076:Slc25a23'

689824

Institutional Source

Beutler Lab

Gene Symbol

Slc25a23

Ensembl Gene

ENSMUSG00000046329

Gene Name

solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23

Synonyms

SCaMC-3, 2310067G05Rik

MMRRC Submission

068897-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9076 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

57350711-57366863 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 57354309 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Histidine at position 366 (Y366H)

Ref Sequence

ENSEMBL: ENSMUSP00000040198 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040280] [ENSMUST00000171528]

AlphaFold

Q6GQS1

Predicted Effect

probably benign
Transcript: ENSMUST00000040280
AA Change: Y366H

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000040198
Gene: ENSMUSG00000046329
AA Change: Y366H

Domain	Start	End	E-Value	Type
EFh	13	41	2.72e-3	SMART
EFh	80	108	1.09e0	SMART
EFh	116	144	3.07e1	SMART
Pfam:Mito_carr	181	273	3.8e-25	PFAM
Pfam:Mito_carr	274	366	4.1e-26	PFAM
Pfam:Mito_carr	372	465	6.5e-21	PFAM

Predicted Effect

SMART Domains

Protein: ENSMUSP00000132962
Gene: ENSMUSG00000046329
AA Change: Y57H

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	1	58	6.5e-15	PFAM
Pfam:Mito_carr	64	123	1.9e-7	PFAM

Predicted Effect

SMART Domains

Protein: ENSMUSP00000132169
Gene: ENSMUSG00000046329
AA Change: Y165H

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	1	76	1.9e-19	PFAM
Pfam:Mito_carr	77	166	1.2e-21	PFAM
Pfam:Mito_carr	172	265	7.6e-22	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000171128

Predicted Effect

probably benign
Transcript: ENSMUST00000171528
AA Change: Y114H

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000128348
Gene: ENSMUSG00000046329
AA Change: Y114H

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	22	114	8.3e-29	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

99% (67/68)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit impaired mitochondrial function. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy7	G	A	8: 89,054,336 (GRCm39)	G1064R	probably damaging	Het
Adcy9	A	G	16: 4,106,687 (GRCm39)	V1046A	probably damaging	Het
Adgrv1	C	T	13: 81,570,247 (GRCm39)		probably null	Het
Apbb2	A	C	5: 66,469,507 (GRCm39)	L554W	probably damaging	Het
Arhgef10	C	T	8: 15,024,993 (GRCm39)	P722S	probably damaging	Het
B3galt9	A	T	2: 34,729,209 (GRCm39)	Y336F	probably damaging	Het
Capns1	A	C	7: 29,893,510 (GRCm39)	M1R	probably null	Het
Chst1	C	T	2: 92,443,761 (GRCm39)	Q78*	probably null	Het
Clec12b	A	G	6: 129,356,580 (GRCm39)	S195P	possibly damaging	Het
Cog8	C	T	8: 107,779,208 (GRCm39)	M356I	probably damaging	Het
Cyp4b1	T	C	4: 115,482,424 (GRCm39)	N452D	probably damaging	Het
Defb40	A	T	8: 19,024,994 (GRCm39)	Y71N	probably benign	Het
Dhx8	G	T	11: 101,629,021 (GRCm39)	R190L		Het
Disp1	G	A	1: 182,868,799 (GRCm39)	T1207M	possibly damaging	Het
Dnah9	T	A	11: 66,008,464 (GRCm39)	Y787F	probably benign	Het
Egflam	T	C	15: 7,237,155 (GRCm39)	N1010D	probably damaging	Het
Fam151a	T	A	4: 106,603,254 (GRCm39)	Y272N	probably damaging	Het
Fat1	T	C	8: 45,492,938 (GRCm39)	Y3887H	probably damaging	Het
Fpr3	T	A	17: 18,191,725 (GRCm39)	I332N	probably benign	Het
Frmd4a	G	T	2: 4,608,765 (GRCm39)	G878W	probably damaging	Het
Fv1	T	C	4: 147,953,628 (GRCm39)	Y65H	possibly damaging	Het
Gabra6	G	A	11: 42,198,289 (GRCm39)	A387V	probably benign	Het
Gna11	T	C	10: 81,366,715 (GRCm39)	T332A		Het
Gpr161	T	A	1: 165,133,757 (GRCm39)	H6Q	possibly damaging	Het
Grin2b	CA	C	6: 135,709,509 (GRCm39)		probably null	Het
Heatr3	A	T	8: 88,876,827 (GRCm39)	M290L	probably benign	Het
Ifi47	T	G	11: 48,986,842 (GRCm39)	I203R	probably benign	Het
Ighv5-8	TATACAT	TAT	12: 113,618,583 (GRCm39)		probably benign	Het
Klhl10	A	G	11: 100,337,962 (GRCm39)	M234V	possibly damaging	Het
Klra4	A	G	6: 130,039,107 (GRCm39)	I95T	possibly damaging	Het
Krt84	A	G	15: 101,438,098 (GRCm39)	F286L	probably damaging	Het
Lrp2	A	G	2: 69,350,260 (GRCm39)	V704A	probably benign	Het
Lypd6b	A	T	2: 49,837,534 (GRCm39)	S169C	possibly damaging	Het
Mapk12	T	C	15: 89,024,611 (GRCm39)	E22G	probably benign	Het
Ncapg	T	C	5: 45,833,983 (GRCm39)	C340R	probably benign	Het
Ncor2	A	G	5: 125,111,086 (GRCm39)	L394P		Het
Nek1	T	G	8: 61,481,768 (GRCm39)	S228A	probably damaging	Het
Or2ak7	T	C	11: 58,574,722 (GRCm39)	C8R	probably benign	Het
Or2t29	A	T	11: 58,433,782 (GRCm39)	C186*	probably null	Het
Or2t44	T	A	11: 58,677,559 (GRCm39)	F166L	possibly damaging	Het
Or4c119	C	T	2: 88,986,719 (GRCm39)	E267K	possibly damaging	Het
Or56b1	C	T	7: 104,285,291 (GRCm39)	R137C	probably benign	Het
Pcdha8	C	A	18: 37,126,285 (GRCm39)	P256T	possibly damaging	Het
Pmm1	C	T	15: 81,839,896 (GRCm39)	R143H	probably damaging	Het
Ptprn	A	T	1: 75,229,018 (GRCm39)	M799K	probably damaging	Het
Rhpn2	A	T	7: 35,083,473 (GRCm39)		probably benign	Het
Sae1	A	G	7: 16,070,668 (GRCm39)	F281L	probably benign	Het
Slc25a25	G	T	2: 32,309,175 (GRCm39)	T222K	probably damaging	Het
Smarca2	T	A	19: 26,659,452 (GRCm39)	F914Y	possibly damaging	Het
Spef2	C	A	15: 9,653,091 (GRCm39)	V897L	probably benign	Het
Spon2	C	A	5: 33,374,054 (GRCm39)	E110*	probably null	Het
Sstr2	A	G	11: 113,515,177 (GRCm39)	N32S	probably benign	Het
Stk4	T	C	2: 163,959,985 (GRCm39)	V415A	probably benign	Het
Tcaf1	T	G	6: 42,654,372 (GRCm39)	T607P	probably benign	Het
Ush1c	C	A	7: 45,850,480 (GRCm39)	L766F	probably damaging	Het
Usp9y	T	C	Y: 1,383,354 (GRCm39)	I795V	probably benign	Het
Vmn1r43	G	A	6: 89,846,877 (GRCm39)	T203M	probably damaging	Het
Vmn2r53	A	G	7: 12,340,231 (GRCm39)	S81P	probably damaging	Het
Vps45	A	G	3: 95,960,345 (GRCm39)		probably benign	Het
Wdr6	A	G	9: 108,451,627 (GRCm39)	V752A	probably benign	Het
Xkr4	G	A	1: 3,286,358 (GRCm39)	R611*	probably null	Het
Zc3h6	T	G	2: 128,859,096 (GRCm39)	Y1042*	probably null	Het
Zfp236	A	G	18: 82,638,469 (GRCm39)	S1384P	possibly damaging	Het
Zfp800	A	T	6: 28,243,215 (GRCm39)	N583K	probably benign	Het
Zpld1	T	C	16: 55,061,764 (GRCm39)	S206G	probably benign	Het
Zxdc	T	A	6: 90,349,821 (GRCm39)	S372R	probably damaging	Het

Other mutations in Slc25a23

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01090:Slc25a23	APN	17	57,354,233 (GRCm39)	missense	probably benign	0.01
IGL01614:Slc25a23	APN	17	57,352,579 (GRCm39)	missense	probably null	0.98
IGL01919:Slc25a23	APN	17	57,354,291 (GRCm39)	missense	possibly damaging	0.61
IGL01933:Slc25a23	APN	17	57,359,813 (GRCm39)	nonsense	probably null
IGL02297:Slc25a23	APN	17	57,360,324 (GRCm39)	missense	probably benign	0.00
R1317:Slc25a23	UTSW	17	57,360,888 (GRCm39)	missense	possibly damaging	0.63
R1411:Slc25a23	UTSW	17	57,366,622 (GRCm39)	missense	probably damaging	0.97
R1577:Slc25a23	UTSW	17	57,354,306 (GRCm39)	missense	probably benign	0.00
R2156:Slc25a23	UTSW	17	57,352,562 (GRCm39)	missense	probably benign	0.00
R4581:Slc25a23	UTSW	17	57,359,740 (GRCm39)	missense	probably damaging	0.96
R4755:Slc25a23	UTSW	17	57,359,794 (GRCm39)	missense	possibly damaging	0.92
R4786:Slc25a23	UTSW	17	57,354,326 (GRCm39)	missense	possibly damaging	0.68
R4789:Slc25a23	UTSW	17	57,366,597 (GRCm39)	missense	probably damaging	1.00
R5402:Slc25a23	UTSW	17	57,360,336 (GRCm39)	missense	probably benign	0.07
R5423:Slc25a23	UTSW	17	57,360,597 (GRCm39)	missense	probably damaging	0.99
R5478:Slc25a23	UTSW	17	57,359,780 (GRCm39)	missense	probably damaging	1.00
R5659:Slc25a23	UTSW	17	57,352,500 (GRCm39)	unclassified	probably benign
R5787:Slc25a23	UTSW	17	57,360,825 (GRCm39)	missense	probably damaging	1.00
R6417:Slc25a23	UTSW	17	57,359,780 (GRCm39)	missense	probably damaging	0.98
R6420:Slc25a23	UTSW	17	57,359,780 (GRCm39)	missense	probably damaging	0.98
R6462:Slc25a23	UTSW	17	57,359,720 (GRCm39)	missense	probably damaging	1.00
R6830:Slc25a23	UTSW	17	57,360,804 (GRCm39)	nonsense	probably null
R6858:Slc25a23	UTSW	17	57,365,171 (GRCm39)	missense	probably damaging	1.00
R7311:Slc25a23	UTSW	17	57,359,827 (GRCm39)	missense	probably damaging	1.00
R7381:Slc25a23	UTSW	17	57,360,587 (GRCm39)	missense	probably damaging	1.00
R7491:Slc25a23	UTSW	17	57,359,822 (GRCm39)	nonsense	probably null
R7543:Slc25a23	UTSW	17	57,365,106 (GRCm39)	critical splice donor site	probably null
R7646:Slc25a23	UTSW	17	57,366,759 (GRCm39)	unclassified	probably benign
R8879:Slc25a23	UTSW	17	57,366,709 (GRCm39)	unclassified	probably benign
R9042:Slc25a23	UTSW	17	57,352,553 (GRCm39)	missense	probably damaging	1.00
R9399:Slc25a23	UTSW	17	57,360,930 (GRCm39)	missense	probably damaging	1.00
X0026:Slc25a23	UTSW	17	57,362,350 (GRCm39)	missense	probably benign	0.09

Predicted Primers

PCR Primer
(F):5'- AAGTGGCTGGCTTTCCTAC -3'
(R):5'- ATCCTCCAGTGAAGGTTCGG -3'

Sequencing Primer
(F):5'- GGCTGGCTTTCCTACCCCAG -3'
(R):5'- TTTCCTAGAATCCCCCAATGGAGG -3'

Posted On

2021-11-19