Incidental Mutation 'R8932:Shank3'
ID 690258
Institutional Source Beutler Lab
Gene Symbol Shank3
Ensembl Gene ENSMUSG00000022623
Gene Name SH3 and multiple ankyrin repeat domains 3
Synonyms ProSAP2
MMRRC Submission 068776-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.179) question?
Stock # R8932 (G1)
Quality Score 225.009
Status Validated
Chromosome 15
Chromosomal Location 89383826-89444464 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 89432986 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tryptophan to Arginine at position 1244 (W1244R)
Ref Sequence ENSEMBL: ENSMUSP00000104932 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000039074] [ENSMUST00000109309] [ENSMUST00000167173] [ENSMUST00000229559] [ENSMUST00000230807]
AlphaFold Q4ACU6
Predicted Effect
SMART Domains Protein: ENSMUSP00000048062
Gene: ENSMUSG00000022623
AA Change: W1169R

DomainStartEndE-ValueType
ANK 182 211 1.54e-1 SMART
ANK 215 245 3.36e2 SMART
ANK 249 278 2.47e0 SMART
ANK 282 311 3.71e-4 SMART
ANK 315 345 5.03e2 SMART
low complexity region 434 462 N/A INTRINSIC
SH3 473 528 1.28e-14 SMART
PDZ 579 664 3.95e-13 SMART
low complexity region 672 684 N/A INTRINSIC
low complexity region 813 843 N/A INTRINSIC
low complexity region 857 869 N/A INTRINSIC
low complexity region 905 923 N/A INTRINSIC
low complexity region 1078 1092 N/A INTRINSIC
low complexity region 1109 1121 N/A INTRINSIC
low complexity region 1173 1194 N/A INTRINSIC
low complexity region 1235 1252 N/A INTRINSIC
low complexity region 1266 1278 N/A INTRINSIC
low complexity region 1318 1332 N/A INTRINSIC
low complexity region 1341 1355 N/A INTRINSIC
low complexity region 1370 1395 N/A INTRINSIC
low complexity region 1409 1427 N/A INTRINSIC
low complexity region 1552 1558 N/A INTRINSIC
low complexity region 1584 1599 N/A INTRINSIC
low complexity region 1626 1658 N/A INTRINSIC
SAM 1664 1730 3.08e-18 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000109309
AA Change: W1244R

PolyPhen 2 Score 0.864 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000104932
Gene: ENSMUSG00000022623
AA Change: W1244R

DomainStartEndE-ValueType
low complexity region 5 55 N/A INTRINSIC
Pfam:FERM_f0 84 167 2.5e-14 PFAM
ANK 257 286 1.54e-1 SMART
ANK 290 320 3.36e2 SMART
ANK 324 353 2.47e0 SMART
ANK 357 386 3.71e-4 SMART
ANK 390 420 5.03e2 SMART
low complexity region 509 537 N/A INTRINSIC
SH3 548 603 1.28e-14 SMART
PDZ 654 739 3.95e-13 SMART
low complexity region 747 759 N/A INTRINSIC
low complexity region 888 918 N/A INTRINSIC
low complexity region 932 944 N/A INTRINSIC
low complexity region 980 998 N/A INTRINSIC
low complexity region 1153 1167 N/A INTRINSIC
low complexity region 1184 1196 N/A INTRINSIC
low complexity region 1248 1269 N/A INTRINSIC
low complexity region 1310 1327 N/A INTRINSIC
low complexity region 1341 1353 N/A INTRINSIC
low complexity region 1393 1407 N/A INTRINSIC
low complexity region 1416 1430 N/A INTRINSIC
low complexity region 1445 1470 N/A INTRINSIC
low complexity region 1484 1502 N/A INTRINSIC
low complexity region 1627 1633 N/A INTRINSIC
low complexity region 1659 1674 N/A INTRINSIC
low complexity region 1701 1733 N/A INTRINSIC
SAM 1739 1805 3.08e-18 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000167173
SMART Domains Protein: ENSMUSP00000132229
Gene: ENSMUSG00000022623

DomainStartEndE-ValueType
low complexity region 57 66 N/A INTRINSIC
low complexity region 80 91 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000229559
Predicted Effect probably benign
Transcript: ENSMUST00000230807
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency 100% (67/67)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the Shank gene family. Shank proteins are multidomain scaffold proteins of the postsynaptic density that connect neurotransmitter receptors, ion channels, and other membrane proteins to the actin cytoskeleton and G-protein-coupled signaling pathways. Shank proteins also play a role in synapse formation and dendritic spine maturation. Mutations in this gene are a cause of autism spectrum disorder (ASD), which is characterized by impairments in social interaction and communication, and restricted behavioral patterns and interests. Mutations in this gene also cause schizophrenia type 15, and are a major causative factor in the neurological symptoms of 22q13.3 deletion syndrome, which is also known as Phelan-McDermid syndrome. Additional isoforms have been described for this gene but they have not yet been experimentally verified. [provided by RefSeq, Mar 2012]
PHENOTYPE: Mice carrying various deletions of exons encoding the ankyrin repeats (exons 4-9) exhibit a range of synaptic and autism-related impairments. Homozygotes lacking exon 9 show altered excitation/inhibition balance, increased rearing, and mildly impaired spatial memory. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 72 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam34 G T 8: 44,105,192 (GRCm39) T151K probably benign Het
Adnp2 C T 18: 80,185,893 (GRCm39) G27S probably damaging Het
Ank3 A G 10: 69,660,292 (GRCm39) M265V probably benign Het
Aoc1l1 G A 6: 48,952,428 (GRCm39) E118K probably damaging Het
Apoe T C 7: 19,430,597 (GRCm39) D215G possibly damaging Het
Atp5f1b A G 10: 127,924,850 (GRCm39) I438V probably benign Het
Bckdha A G 7: 25,330,436 (GRCm39) S387P probably damaging Het
Camkk1 T C 11: 72,924,734 (GRCm39) F316L probably damaging Het
Carmil1 A G 13: 24,197,179 (GRCm39) Y158H Het
Ccdc148 T C 2: 58,894,054 (GRCm39) R29G probably benign Het
Ccdc39 A G 3: 33,884,274 (GRCm39) V356A probably benign Het
Cdan1 G A 2: 120,561,568 (GRCm39) Q66* probably null Het
Ckap4 A T 10: 84,364,290 (GRCm39) S258T probably benign Het
Col5a2 T C 1: 45,419,306 (GRCm39) D1258G probably benign Het
Col6a1 G A 10: 76,552,593 (GRCm39) P431L unknown Het
Cplane1 A G 15: 8,223,859 (GRCm39) Y874C probably damaging Het
Csn1s2a A G 5: 87,933,164 (GRCm39) I138V probably benign Het
Cyp19a1 C T 9: 54,083,861 (GRCm39) G176D probably benign Het
Dnah10 A G 5: 124,878,015 (GRCm39) E2700G possibly damaging Het
Eif3l T A 15: 78,960,006 (GRCm39) Y23* probably null Het
Fam72a A G 1: 131,456,502 (GRCm39) K22E probably benign Het
Golim4 A G 3: 75,805,351 (GRCm39) V258A probably benign Het
Gtf2ird2 C T 5: 134,237,739 (GRCm39) A272V probably benign Het
Hpse T C 5: 100,846,872 (GRCm39) T186A possibly damaging Het
Ift140 A T 17: 25,305,862 (GRCm39) Q816H probably benign Het
Iqca1 A T 1: 90,067,750 (GRCm39) I167N probably damaging Het
Iqgap1 A T 7: 80,401,141 (GRCm39) F515L probably benign Het
Itgb4 G A 11: 115,879,295 (GRCm39) R558H probably benign Het
Kcna10 G A 3: 107,101,419 (GRCm39) D17N probably damaging Het
Kcnj16 A G 11: 110,915,829 (GRCm39) I164V probably damaging Het
Lrrc55 G T 2: 85,026,615 (GRCm39) N136K probably damaging Het
Mdm4 A T 1: 132,940,382 (GRCm39) M50K probably benign Het
Mfge8 A G 7: 78,786,530 (GRCm39) S290P probably damaging Het
Mindy4 G A 6: 55,201,115 (GRCm39) D267N probably benign Het
Mllt10 T A 2: 18,128,617 (GRCm39) S199R probably benign Het
Mms22l T C 4: 24,533,029 (GRCm39) S436P probably damaging Het
Mpped2 A G 2: 106,697,395 (GRCm39) N290S possibly damaging Het
Mrgpra2a A G 7: 47,076,445 (GRCm39) L271P probably benign Het
Myrf T A 19: 10,200,931 (GRCm39) E247D probably benign Het
Ndrg3 A G 2: 156,782,299 (GRCm39) I189T possibly damaging Het
Nenf C T 1: 191,050,148 (GRCm39) E48K probably benign Het
Nlgn2 T A 11: 69,718,994 (GRCm39) N232Y probably damaging Het
Oog2 G T 4: 143,920,685 (GRCm39) M39I probably benign Het
Or9r7 A T 10: 129,962,631 (GRCm39) N98K probably benign Het
Osbpl3 A T 6: 50,304,371 (GRCm39) N461K probably benign Het
P4ha1 A G 10: 59,175,130 (GRCm39) D30G possibly damaging Het
Pappa2 A T 1: 158,590,762 (GRCm39) C1631S probably damaging Het
Pigk A G 3: 152,445,871 (GRCm39) M161V possibly damaging Het
Prdm1 G T 10: 44,317,335 (GRCm39) S496Y probably damaging Het
Prkg2 T C 5: 99,095,299 (GRCm39) N624S possibly damaging Het
Rgs6 A G 12: 83,112,733 (GRCm39) D181G probably damaging Het
Sbf2 A G 7: 110,040,155 (GRCm39) probably null Het
Sbno2 A C 10: 79,898,042 (GRCm39) L728W probably damaging Het
Selenbp2 A T 3: 94,609,793 (GRCm39) I310F probably damaging Het
Slc34a1 A C 13: 24,004,184 (GRCm39) I395L probably benign Het
Slf1 A T 13: 77,194,693 (GRCm39) D877E probably damaging Het
Smtn T C 11: 3,472,908 (GRCm39) S255G probably benign Het
Tbx2 T A 11: 85,725,533 (GRCm39) D161E probably damaging Het
Tex14 C A 11: 87,324,675 (GRCm39) L26M possibly damaging Het
Traf7 A G 17: 24,731,286 (GRCm39) F249S probably damaging Het
Trpm6 A G 19: 18,815,366 (GRCm39) K1151E possibly damaging Het
Ttc7b A G 12: 100,268,022 (GRCm39) V773A probably benign Het
Ttn G A 2: 76,747,912 (GRCm39) T4379I probably benign Het
Ttn G A 2: 76,602,854 (GRCm39) T18456I probably damaging Het
Ttn G C 2: 76,709,171 (GRCm39) L8703V unknown Het
Ubb T A 11: 62,442,979 (GRCm39) I3N probably damaging Het
Vmn1r209 A T 13: 22,990,343 (GRCm39) W116R probably damaging Het
Vmn1r75 A G 7: 11,614,838 (GRCm39) D190G probably damaging Het
Wdr12 T A 1: 60,130,202 (GRCm39) M70L probably benign Het
Wdr48 C A 9: 119,740,142 (GRCm39) T317K probably damaging Het
Zbtb5 A G 4: 44,993,962 (GRCm39) V474A probably benign Het
Zfp128 C T 7: 12,625,113 (GRCm39) R494C possibly damaging Het
Other mutations in Shank3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01070:Shank3 APN 15 89,433,619 (GRCm39) missense probably damaging 1.00
IGL01469:Shank3 APN 15 89,405,477 (GRCm39) missense probably damaging 1.00
IGL01886:Shank3 APN 15 89,415,866 (GRCm39) missense probably damaging 1.00
IGL01934:Shank3 APN 15 89,434,049 (GRCm39) missense probably damaging 1.00
IGL01989:Shank3 APN 15 89,387,502 (GRCm39) splice site probably benign
IGL02004:Shank3 APN 15 89,387,502 (GRCm39) splice site probably benign
IGL02085:Shank3 APN 15 89,388,118 (GRCm39) critical splice donor site probably null
IGL02195:Shank3 APN 15 89,432,321 (GRCm39) missense probably damaging 1.00
IGL02354:Shank3 APN 15 89,388,536 (GRCm39) missense probably damaging 1.00
IGL02361:Shank3 APN 15 89,388,536 (GRCm39) missense probably damaging 1.00
IGL02541:Shank3 APN 15 89,385,613 (GRCm39) missense probably damaging 1.00
G1citation:Shank3 UTSW 15 89,415,830 (GRCm39) missense probably damaging 1.00
R0294:Shank3 UTSW 15 89,416,301 (GRCm39) missense probably damaging 1.00
R0468:Shank3 UTSW 15 89,433,478 (GRCm39) missense probably benign 0.28
R0483:Shank3 UTSW 15 89,427,442 (GRCm39) splice site probably benign
R0605:Shank3 UTSW 15 89,408,350 (GRCm39) missense possibly damaging 0.49
R0675:Shank3 UTSW 15 89,415,591 (GRCm39) missense possibly damaging 0.92
R1082:Shank3 UTSW 15 89,433,574 (GRCm39) missense probably damaging 1.00
R1576:Shank3 UTSW 15 89,387,866 (GRCm39) missense probably benign 0.11
R1702:Shank3 UTSW 15 89,384,099 (GRCm39) missense probably damaging 0.99
R1726:Shank3 UTSW 15 89,442,189 (GRCm39) missense probably damaging 1.00
R1958:Shank3 UTSW 15 89,387,351 (GRCm39) missense probably damaging 0.99
R1961:Shank3 UTSW 15 89,442,167 (GRCm39) missense possibly damaging 0.60
R2420:Shank3 UTSW 15 89,405,413 (GRCm39) nonsense probably null
R2513:Shank3 UTSW 15 89,432,889 (GRCm39) missense probably benign 0.05
R3917:Shank3 UTSW 15 89,387,587 (GRCm39) missense possibly damaging 0.77
R4163:Shank3 UTSW 15 89,433,797 (GRCm39) missense probably damaging 1.00
R4205:Shank3 UTSW 15 89,387,521 (GRCm39) missense probably damaging 1.00
R4434:Shank3 UTSW 15 89,387,562 (GRCm39) missense probably damaging 1.00
R4791:Shank3 UTSW 15 89,384,557 (GRCm39) missense probably damaging 1.00
R4816:Shank3 UTSW 15 89,427,318 (GRCm39) missense probably damaging 1.00
R4828:Shank3 UTSW 15 89,384,402 (GRCm39) intron probably benign
R4911:Shank3 UTSW 15 89,388,547 (GRCm39) missense probably damaging 1.00
R4997:Shank3 UTSW 15 89,433,901 (GRCm39) missense probably damaging 1.00
R5213:Shank3 UTSW 15 89,417,481 (GRCm39) missense possibly damaging 0.82
R5338:Shank3 UTSW 15 89,415,914 (GRCm39) splice site probably null
R5494:Shank3 UTSW 15 89,432,441 (GRCm39) missense probably damaging 0.99
R5543:Shank3 UTSW 15 89,416,557 (GRCm39) missense probably damaging 1.00
R5654:Shank3 UTSW 15 89,405,529 (GRCm39) missense probably benign 0.07
R5900:Shank3 UTSW 15 89,387,593 (GRCm39) missense probably damaging 1.00
R5906:Shank3 UTSW 15 89,433,119 (GRCm39) missense probably damaging 1.00
R6385:Shank3 UTSW 15 89,405,578 (GRCm39) critical splice donor site probably null
R6432:Shank3 UTSW 15 89,387,616 (GRCm39) missense possibly damaging 0.75
R6724:Shank3 UTSW 15 89,416,656 (GRCm39) missense probably damaging 1.00
R6822:Shank3 UTSW 15 89,415,830 (GRCm39) missense probably damaging 1.00
R6845:Shank3 UTSW 15 89,432,528 (GRCm39) missense probably benign 0.00
R7088:Shank3 UTSW 15 89,387,728 (GRCm39) splice site probably null
R7390:Shank3 UTSW 15 89,433,515 (GRCm39) missense probably benign 0.05
R7808:Shank3 UTSW 15 89,433,083 (GRCm39) missense probably damaging 1.00
R7862:Shank3 UTSW 15 89,389,648 (GRCm39) missense possibly damaging 0.73
R8039:Shank3 UTSW 15 89,389,642 (GRCm39) missense probably damaging 1.00
R8090:Shank3 UTSW 15 89,389,661 (GRCm39) critical splice donor site probably null
R8170:Shank3 UTSW 15 89,433,043 (GRCm39) missense possibly damaging 0.69
R8189:Shank3 UTSW 15 89,433,439 (GRCm39) missense probably benign
R8246:Shank3 UTSW 15 89,417,549 (GRCm39) missense possibly damaging 0.90
R8515:Shank3 UTSW 15 89,387,775 (GRCm39) nonsense probably null
R8525:Shank3 UTSW 15 89,431,973 (GRCm39) missense probably damaging 0.99
R8537:Shank3 UTSW 15 89,416,418 (GRCm39) missense probably damaging 1.00
R8673:Shank3 UTSW 15 89,433,979 (GRCm39) missense probably damaging 1.00
R8826:Shank3 UTSW 15 89,433,598 (GRCm39) missense probably damaging 1.00
R8954:Shank3 UTSW 15 89,433,431 (GRCm39) missense possibly damaging 0.88
R8976:Shank3 UTSW 15 89,442,381 (GRCm39) missense probably damaging 1.00
R8992:Shank3 UTSW 15 89,432,888 (GRCm39) missense possibly damaging 0.95
R8994:Shank3 UTSW 15 89,417,416 (GRCm39) missense probably benign 0.27
R9130:Shank3 UTSW 15 89,442,419 (GRCm39) missense probably benign 0.19
R9258:Shank3 UTSW 15 89,388,521 (GRCm39) missense probably damaging 1.00
R9645:Shank3 UTSW 15 89,409,453 (GRCm39) missense possibly damaging 0.96
RF020:Shank3 UTSW 15 89,384,593 (GRCm39) missense probably benign 0.20
Z1177:Shank3 UTSW 15 89,442,525 (GRCm39) makesense probably null
Predicted Primers PCR Primer
(F):5'- TGGATCCTAGCTCACCCTTAGC -3'
(R):5'- CACAGCGAATACCAGCTCTG -3'

Sequencing Primer
(F):5'- GATCCTAGCTCACCCTTAGCTCTTG -3'
(R):5'- TCTGAGCTGCCTTGACCTGG -3'
Posted On 2021-11-19