Mutagenetix > Incidental Mutation

Incidental Mutation 'R9091:Pak5'

690973

Institutional Source

Beutler Lab

Gene Symbol

Pak5

Ensembl Gene

ENSMUSG00000039913

Gene Name

p21 (RAC1) activated kinase 5

Synonyms

Pak5, Pak7, 2900083L08Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9091 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

135923024-136229887 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 135958688 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Arginine at position 133 (S133R)

Ref Sequence

ENSEMBL: ENSMUSP00000047285 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035264] [ENSMUST00000077200]

AlphaFold

Q8C015

Predicted Effect

probably damaging
Transcript: ENSMUST00000035264
AA Change: S133R

PolyPhen 2 Score 0.982 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000047285
Gene: ENSMUSG00000039913
AA Change: S133R

Domain	Start	End	E-Value	Type
PBD	11	46	5.3e-13	SMART
low complexity region	394	415	N/A	INTRINSIC
S_TKc	449	700	1.39e-90	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000077200
AA Change: S133R

PolyPhen 2 Score 0.982 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000076440
Gene: ENSMUSG00000039913
AA Change: S133R

Domain	Start	End	E-Value	Type
PBD	11	46	5.3e-13	SMART
low complexity region	394	415	N/A	INTRINSIC
S_TKc	449	700	1.39e-90	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the PAK family of Ser/Thr protein kinases. PAK family members are known to be effectors of Rac/Cdc42 GTPases, which have been implicated in the regulation of cytoskeletal dynamics, proliferation, and cell survival signaling. This kinase contains a CDC42/Rac1 interactive binding (CRIB) motif, and has been shown to bind CDC42 in the presence of GTP. This kinase is predominantly expressed in brain. It is capable of promoting neurite outgrowth, and thus may play a role in neurite development. This kinase is associated with microtubule networks and induces microtubule stabilization. The subcellular localization of this kinase is tightly regulated during cell cycle progression. Alternatively spliced transcript variants encoding the same protein have been described. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice exhibit impaired active avoidance learning but are otherwise normal. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Actrt3	T	A	3: 30,652,781 (GRCm39)	E104D	probably damaging	Het
Arih2	A	T	9: 108,493,890 (GRCm39)	D174E	probably damaging	Het
Asprv1	T	C	6: 86,606,077 (GRCm39)	F308L	probably damaging	Het
Baiap2l2	A	G	15: 79,168,205 (GRCm39)		probably null	Het
Btla	T	C	16: 45,064,656 (GRCm39)	F203L	possibly damaging	Het
C1rb	A	T	6: 124,551,947 (GRCm39)	D283V	probably damaging	Het
C87436	C	G	6: 86,442,813 (GRCm39)	Q462E	probably benign	Het
Ccdc149	T	C	5: 52,563,352 (GRCm39)	D147G	possibly damaging	Het
Chd6	A	T	2: 160,871,793 (GRCm39)	L214*	probably null	Het
Chrna4	C	A	2: 180,670,643 (GRCm39)	R371L	possibly damaging	Het
Cit	C	A	5: 115,984,161 (GRCm39)		probably benign	Het
Cpne5	A	G	17: 29,444,163 (GRCm39)		probably null	Het
Cr1l	T	C	1: 194,789,204 (GRCm39)	E400G	possibly damaging	Het
Creb3l2	T	C	6: 37,332,583 (GRCm39)	N304D	probably damaging	Het
Cyp17a1	T	C	19: 46,656,030 (GRCm39)	T420A	probably benign	Het
Cyp24a1	A	G	2: 170,327,853 (GRCm39)	I463T	probably damaging	Het
Cyp3a41b	A	T	5: 145,514,973 (GRCm39)	I84N	probably damaging	Het
Dnajc6	G	A	4: 101,496,559 (GRCm39)	V909M	possibly damaging	Het
Dtl	A	G	1: 191,288,923 (GRCm39)	Y264H	probably damaging	Het
Dysf	C	T	6: 84,077,216 (GRCm39)	R660*	probably null	Het
Egf	A	G	3: 129,529,449 (GRCm39)		probably null	Het
Eva1c	T	C	16: 90,701,231 (GRCm39)	S402P	probably benign	Het
Fcho2	A	T	13: 98,925,869 (GRCm39)		probably null	Het
Fhdc1	G	A	3: 84,352,290 (GRCm39)	R197C	unknown	Het
Foxa2	T	A	2: 147,886,426 (GRCm39)	M136L	probably benign	Het
Gm10226	T	C	17: 21,910,866 (GRCm39)	C34R	possibly damaging	Het
Gm29735	ACAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCAGGGCTTGCAACAGCAGGATTCGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCAAGGCTTGCAGCAGCTGGACTGGCAGCAGCAGGGCTTGCA	ACAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCAGGGCTTGCAACAGCAGGATTCGCAGCAGCAGGGCTTGCAGCAGCTGGACTGGCAGCAGCAAGGCTTGCAGCAGCTGGACTGGCAGCAGCAGGGCTTGCA	7: 141,710,266 (GRCm39)		probably benign	Het
Gm8947	T	C	1: 151,068,853 (GRCm39)	S229P	probably benign	Het
Ighv9-2	A	T	12: 114,072,896 (GRCm39)	S26T	probably damaging	Het
Itpr3	G	A	17: 27,337,651 (GRCm39)		probably benign	Het
Kat6a	T	G	8: 23,420,190 (GRCm39)	I745M	probably damaging	Het
Klhdc1	T	C	12: 69,309,968 (GRCm39)	L290P	probably damaging	Het
Lcp2	C	T	11: 34,039,688 (GRCm39)	T496I		Het
Map4k4	T	C	1: 40,042,923 (GRCm39)	W593R	probably benign	Het
Mefv	T	G	16: 3,535,841 (GRCm39)	Q29P	probably damaging	Het
Mgat5b	T	C	11: 116,859,269 (GRCm39)	Y34H		Het
Mlip	C	T	9: 77,137,080 (GRCm39)	R609Q	probably benign	Het
Muc2	A	G	7: 141,290,816 (GRCm39)	D34G		Het
Nbeal1	C	T	1: 60,307,548 (GRCm39)	P1687S	possibly damaging	Het
Notch1	T	A	2: 26,369,895 (GRCm39)	I477L	probably damaging	Het
Odad2	T	A	18: 7,217,846 (GRCm39)	K623*	probably null	Het
Or1l4b	G	A	2: 37,037,047 (GRCm39)	M274I	probably benign	Het
Or1s2	T	C	19: 13,758,333 (GRCm39)	V117A	probably benign	Het
Or4a2	A	T	2: 89,248,712 (GRCm39)	L15Q	probably damaging	Het
Or51v8	T	A	7: 103,320,124 (GRCm39)	N38I	probably damaging	Het
Or6c214	A	G	10: 129,591,148 (GRCm39)	M57T	probably damaging	Het
Pcyt1a	C	A	16: 32,285,332 (GRCm39)	D187E	probably benign	Het
Pdlim7	G	T	13: 55,655,354 (GRCm39)	T161K	probably damaging	Het
Phf8-ps	A	C	17: 33,286,701 (GRCm39)	C34G	probably damaging	Het
Pik3r4	A	G	9: 105,547,108 (GRCm39)	K962R	probably benign	Het
Pkd1l2	T	C	8: 117,759,433 (GRCm39)	K1516E	probably damaging	Het
Plk5	C	G	10: 80,193,830 (GRCm39)	R40G	probably damaging	Het
Ptchd3	A	T	11: 121,733,180 (GRCm39)	Y690F	probably benign	Het
Ptpn13	A	T	5: 103,649,735 (GRCm39)	R379S	possibly damaging	Het
Rbm27	C	T	18: 42,438,829 (GRCm39)	A410V	probably benign	Het
Rnase4	A	G	14: 51,342,662 (GRCm39)	T129A	probably benign	Het
Serpinb11	C	T	1: 107,304,533 (GRCm39)	T166I	probably benign	Het
Shank2	A	G	7: 143,963,705 (GRCm39)	T438A	possibly damaging	Het
Slc13a2	T	C	11: 78,295,258 (GRCm39)	N172D	probably damaging	Het
Slc2a8	A	G	2: 32,864,864 (GRCm39)	F428L	probably damaging	Het
Slc38a6	T	C	12: 73,398,544 (GRCm39)	M358T	probably benign	Het
Snx29	A	G	16: 11,213,155 (GRCm39)	H107R	probably benign	Het
Sorbs2	T	G	8: 46,248,774 (GRCm39)	V675G	probably benign	Het
Spint3	G	A	2: 164,415,154 (GRCm39)	A21V	probably benign	Het
Susd1	A	T	4: 59,412,226 (GRCm39)	V162E	probably benign	Het
Syne2	T	G	12: 75,977,834 (GRCm39)	N1426K	probably damaging	Het
Synj2	T	C	17: 6,067,875 (GRCm39)	V638A	possibly damaging	Het
Thada	A	T	17: 84,538,589 (GRCm39)	L1473Q	probably damaging	Het
Trim36	G	A	18: 46,300,580 (GRCm39)	S697L	possibly damaging	Het
Ttbk1	A	T	17: 46,781,517 (GRCm39)	I412N	possibly damaging	Het
Tubb2a	T	C	13: 34,258,578 (GRCm39)	D404G	probably damaging	Het
Tyk2	T	A	9: 21,035,841 (GRCm39)	N114Y	probably damaging	Het
Umodl1	A	G	17: 31,185,678 (GRCm39)	D139G	probably damaging	Het
Vmn2r101	T	A	17: 19,810,244 (GRCm39)	N343K	probably benign	Het
Vnn1	A	G	10: 23,780,464 (GRCm39)	D484G	probably damaging	Het
Vps13b	A	G	15: 35,770,919 (GRCm39)	T2121A	probably benign	Het
Wdr81	T	C	11: 75,345,216 (GRCm39)	E17G	probably benign	Het
Wnk2	T	G	13: 49,224,505 (GRCm39)	K1117Q	probably benign	Het
Zbtb46	C	T	2: 181,066,138 (GRCm39)	R4Q	probably benign	Het
Zfp608	T	A	18: 55,032,190 (GRCm39)	K583N	probably damaging	Het
Zfp729b	A	T	13: 67,740,480 (GRCm39)	L595H	probably damaging	Het

Other mutations in Pak5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01671:Pak5	APN	2	135,958,293 (GRCm39)	missense	possibly damaging	0.89
IGL01743:Pak5	APN	2	135,929,333 (GRCm39)	missense	probably damaging	1.00
IGL02601:Pak5	APN	2	135,958,855 (GRCm39)	nonsense	probably null
IGL03172:Pak5	APN	2	135,940,310 (GRCm39)	nonsense	probably null
currency	UTSW	2	135,942,859 (GRCm39)	missense	probably benign	0.15
Depreciation	UTSW	2	135,939,454 (GRCm39)	missense	probably damaging	1.00
PIT4498001:Pak5	UTSW	2	135,925,211 (GRCm39)	missense	probably damaging	1.00
R0025:Pak5	UTSW	2	135,942,704 (GRCm39)	missense	possibly damaging	0.68
R0025:Pak5	UTSW	2	135,942,704 (GRCm39)	missense	possibly damaging	0.68
R0400:Pak5	UTSW	2	135,939,499 (GRCm39)	missense	possibly damaging	0.95
R0441:Pak5	UTSW	2	135,958,549 (GRCm39)	missense	probably benign
R1653:Pak5	UTSW	2	135,958,807 (GRCm39)	missense	probably damaging	1.00
R1662:Pak5	UTSW	2	135,958,680 (GRCm39)	missense	probably damaging	0.96
R1855:Pak5	UTSW	2	135,929,429 (GRCm39)	missense	probably benign	0.00
R1872:Pak5	UTSW	2	135,927,508 (GRCm39)	missense	possibly damaging	0.93
R2001:Pak5	UTSW	2	135,958,557 (GRCm39)	missense	probably benign	0.00
R2002:Pak5	UTSW	2	135,958,557 (GRCm39)	missense	probably benign	0.00
R2157:Pak5	UTSW	2	135,942,877 (GRCm39)	missense	probably damaging	0.96
R2160:Pak5	UTSW	2	135,940,302 (GRCm39)	missense	probably benign	0.01
R2217:Pak5	UTSW	2	135,958,123 (GRCm39)	missense	probably damaging	1.00
R3797:Pak5	UTSW	2	135,942,746 (GRCm39)	missense	probably benign	0.06
R4711:Pak5	UTSW	2	135,929,437 (GRCm39)	missense	probably damaging	1.00
R4904:Pak5	UTSW	2	135,925,267 (GRCm39)	missense	probably benign	0.02
R5090:Pak5	UTSW	2	135,929,338 (GRCm39)	missense	probably damaging	1.00
R5120:Pak5	UTSW	2	135,925,149 (GRCm39)	missense	probably damaging	0.97
R5669:Pak5	UTSW	2	135,958,204 (GRCm39)	missense	probably damaging	1.00
R5954:Pak5	UTSW	2	135,958,383 (GRCm39)	missense	probably benign	0.01
R6127:Pak5	UTSW	2	135,929,326 (GRCm39)	missense	probably damaging	0.99
R6250:Pak5	UTSW	2	136,016,189 (GRCm39)	start gained	probably benign
R6471:Pak5	UTSW	2	135,958,110 (GRCm39)	missense	probably benign	0.00
R6797:Pak5	UTSW	2	135,939,454 (GRCm39)	missense	probably damaging	1.00
R6809:Pak5	UTSW	2	135,939,501 (GRCm39)	missense	possibly damaging	0.83
R6945:Pak5	UTSW	2	135,942,859 (GRCm39)	missense	probably benign	0.15
R7254:Pak5	UTSW	2	135,958,684 (GRCm39)	missense	possibly damaging	0.50
R7265:Pak5	UTSW	2	135,943,105 (GRCm39)	missense	probably benign	0.03
R7335:Pak5	UTSW	2	135,940,219 (GRCm39)	missense	probably damaging	1.00
R7511:Pak5	UTSW	2	135,925,244 (GRCm39)	missense	possibly damaging	0.87
R7573:Pak5	UTSW	2	135,958,225 (GRCm39)	missense	probably damaging	1.00
R7593:Pak5	UTSW	2	135,942,884 (GRCm39)	missense	probably benign	0.40
R7908:Pak5	UTSW	2	135,958,479 (GRCm39)	missense	probably benign	0.14
R8304:Pak5	UTSW	2	135,940,203 (GRCm39)	missense	probably benign	0.11
R9177:Pak5	UTSW	2	135,943,126 (GRCm39)	missense	probably benign	0.00
R9270:Pak5	UTSW	2	135,958,688 (GRCm39)	missense	probably damaging	0.98
R9505:Pak5	UTSW	2	135,958,812 (GRCm39)	missense	probably damaging	1.00
Z1176:Pak5	UTSW	2	135,925,166 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGATTTTCTCAGAGAGTCCAAGTGG -3'
(R):5'- CCTGCAAGGAAACCTCTATCAATG -3'

Sequencing Primer
(F):5'- CGGCCAGGTCGGTTTTCAAAG -3'
(R):5'- GGAAACCTCTATCAATGGTCTGC -3'

Posted On

2021-12-30