Incidental Mutation 'R9095:Col5a1'
ID 691258
Institutional Source Beutler Lab
Gene Symbol Col5a1
Ensembl Gene ENSMUSG00000026837
Gene Name collagen, type V, alpha 1
Synonyms
MMRRC Submission 068910-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R9095 (G1)
Quality Score 225.009
Status Validated
Chromosome 2
Chromosomal Location 27776437-27929526 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 27914665 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 94 (T94A)
Ref Sequence ENSEMBL: ENSMUSP00000123532 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028280] [ENSMUST00000145423]
AlphaFold O88207
Predicted Effect
SMART Domains Protein: ENSMUSP00000028280
Gene: ENSMUSG00000026837
AA Change: T1583A

DomainStartEndE-ValueType
signal peptide 1 36 N/A INTRINSIC
TSPN 39 230 5.7e-73 SMART
LamG 98 229 6.86e-3 SMART
low complexity region 259 288 N/A INTRINSIC
low complexity region 300 314 N/A INTRINSIC
low complexity region 335 352 N/A INTRINSIC
low complexity region 374 387 N/A INTRINSIC
low complexity region 412 428 N/A INTRINSIC
internal_repeat_7 443 457 9.97e-7 PROSPERO
Pfam:Collagen 467 519 4e-10 PFAM
Pfam:Collagen 557 619 6.5e-9 PFAM
internal_repeat_2 622 642 1.83e-11 PROSPERO
low complexity region 643 698 N/A INTRINSIC
low complexity region 712 757 N/A INTRINSIC
low complexity region 760 793 N/A INTRINSIC
internal_repeat_5 794 817 3.78e-8 PROSPERO
internal_repeat_7 798 812 9.97e-7 PROSPERO
internal_repeat_8 802 821 8.84e-6 PROSPERO
low complexity region 826 862 N/A INTRINSIC
internal_repeat_3 865 889 2.79e-10 PROSPERO
internal_repeat_5 869 892 3.78e-8 PROSPERO
low complexity region 895 925 N/A INTRINSIC
internal_repeat_2 928 948 1.83e-11 PROSPERO
internal_repeat_4 928 948 1.27e-8 PROSPERO
low complexity region 949 979 N/A INTRINSIC
low complexity region 984 1033 N/A INTRINSIC
internal_repeat_4 1039 1062 1.27e-8 PROSPERO
internal_repeat_1 1039 1063 5.12e-15 PROSPERO
internal_repeat_3 1048 1072 2.79e-10 PROSPERO
internal_repeat_6 1049 1072 1.13e-7 PROSPERO
low complexity region 1075 1117 N/A INTRINSIC
low complexity region 1134 1165 N/A INTRINSIC
low complexity region 1174 1193 N/A INTRINSIC
internal_repeat_8 1195 1214 8.84e-6 PROSPERO
low complexity region 1215 1243 N/A INTRINSIC
low complexity region 1249 1282 N/A INTRINSIC
low complexity region 1285 1421 N/A INTRINSIC
internal_repeat_1 1423 1447 5.12e-15 PROSPERO
Pfam:Collagen 1460 1529 8.4e-9 PFAM
Pfam:Collagen 1513 1575 1.2e-9 PFAM
COLFI 1608 1837 3.33e-153 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123129
Predicted Effect probably benign
Transcript: ENSMUST00000145423
AA Change: T94A

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000123532
Gene: ENSMUSG00000026837
AA Change: T94A

DomainStartEndE-ValueType
Pfam:Collagen 1 50 2.7e-10 PFAM
COLFI 119 348 3.33e-153 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 98.9%
Validation Efficiency 100% (75/75)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an alpha chain for one of the low abundance fibrillar collagens. Fibrillar collagen molecules are trimers that can be composed of one or more types of alpha chains. Type V collagen is found in tissues containing type I collagen and appears to regulate the assembly of heterotypic fibers composed of both type I and type V collagen. This gene product is closely related to type XI collagen and it is possible that the collagen chains of types V and XI constitute a single collagen type with tissue-specific chain combinations. The encoded procollagen protein occurs commonly as the heterotrimer pro-alpha1(V)-pro-alpha1(V)-pro-alpha2(V). Mutations in this gene are associated with Ehlers-Danlos syndrome, types I and II. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, May 2013]
PHENOTYPE: Homozygous mutation of this gene results in lethality around E10-11 due to cardiovascular insufficiency and lack of collagen fibril formation. Heterozygotes exhibit poorly organized and less dense fibers in the dermis and reduced skin tensile strength and are a model for Ehlers-Danlos Syndrome. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 76 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca17 C T 17: 24,500,370 (GRCm39) V1274M probably damaging Het
Abca4 A G 3: 121,967,556 (GRCm39) H2202R possibly damaging Het
Ablim3 A G 18: 61,953,463 (GRCm39) L350P probably benign Het
Adamts17 C T 7: 66,654,117 (GRCm39) T449I probably damaging Het
Ankrd39 T A 1: 36,586,241 (GRCm39) D9V probably benign Het
Arhgef7 T C 8: 11,835,819 (GRCm39) V192A probably damaging Het
Art4 C T 6: 136,834,269 (GRCm39) probably benign Het
Atg4a-ps A T 3: 103,553,254 (GRCm39) V29E possibly damaging Het
Ccdc180 A T 4: 45,949,466 (GRCm39) K1574* probably null Het
Cfap54 T G 10: 92,846,882 (GRCm39) T1028P probably damaging Het
Clip2 C T 5: 134,532,254 (GRCm39) R517H possibly damaging Het
Cpne1 T A 2: 155,918,210 (GRCm39) probably null Het
Csnk2a1-ps3 A T 1: 156,352,213 (GRCm39) Y138F probably benign Het
Cyp2f2 T A 7: 26,830,667 (GRCm39) M346K possibly damaging Het
D130040H23Rik AAGAATATATTCTACAGAATATA AAGAATATA 8: 69,755,748 (GRCm39) probably null Het
Ddi2 T A 4: 141,419,590 (GRCm39) I387F probably benign Het
Dsg1b A G 18: 20,523,282 (GRCm39) N103S probably damaging Het
Duxf3 GCCC GCC 10: 58,066,944 (GRCm39) probably null Het
Dysf A G 6: 84,156,666 (GRCm39) I1464V probably benign Het
Epha2 A G 4: 141,044,012 (GRCm39) Y314C possibly damaging Het
Etl4 A G 2: 20,782,964 (GRCm39) E675G probably damaging Het
Fam114a1 A C 5: 65,188,733 (GRCm39) I488L probably benign Het
Fbxo31 G A 8: 122,281,136 (GRCm39) R337C probably damaging Het
Fn1 A C 1: 71,647,149 (GRCm39) I1547S probably null Het
Garre1 A T 7: 33,956,770 (GRCm39) probably null Het
Get1 T A 16: 95,954,244 (GRCm39) probably benign Het
Gm14305 T A 2: 176,413,045 (GRCm39) Y312* probably null Het
Golm2 T A 2: 121,756,096 (GRCm39) L375Q probably damaging Het
Gpihbp1 A G 15: 75,469,641 (GRCm39) T119A possibly damaging Het
Harbi1 T G 2: 91,542,980 (GRCm39) V147G probably damaging Het
Ifit1bl1 T C 19: 34,571,899 (GRCm39) Y186C probably damaging Het
Ighv13-2 C A 12: 114,321,494 (GRCm39) A82S probably benign Het
Itpr1 T A 6: 108,364,352 (GRCm39) D827E probably benign Het
Krtap4-2 C T 11: 99,525,801 (GRCm39) G17D unknown Het
Ly6a A T 15: 74,867,333 (GRCm39) probably benign Het
Mad1l1 C T 5: 140,288,741 (GRCm39) E203K probably damaging Het
Mapk14 C A 17: 28,934,413 (GRCm39) D101E probably benign Het
Meis3 G T 7: 15,917,764 (GRCm39) G306W probably damaging Het
Mixl1 T C 1: 180,524,402 (GRCm39) D59G probably benign Het
Nav2 G A 7: 49,254,293 (GRCm39) V2364M probably damaging Het
Nell1 T C 7: 50,506,150 (GRCm39) S786P possibly damaging Het
Or13a25 T G 7: 140,247,813 (GRCm39) N197K probably damaging Het
Or51e2 C A 7: 102,391,473 (GRCm39) V246L possibly damaging Het
Or51g1 A G 7: 102,633,687 (GRCm39) L228P probably damaging Het
Or5b107 T G 19: 13,143,310 (GRCm39) S311A probably benign Het
Pcdhgb8 A T 18: 37,896,052 (GRCm39) D374V probably damaging Het
Phactr2 A G 10: 13,129,386 (GRCm39) I294T probably benign Het
Plekha4 C T 7: 45,190,492 (GRCm39) A400V probably damaging Het
Pramel21 T C 4: 143,341,760 (GRCm39) F63S probably damaging Het
Pramel4 C A 4: 143,794,928 (GRCm39) D441E probably benign Het
Prr12 G A 7: 44,695,267 (GRCm39) P1400S unknown Het
Prss3b T A 6: 41,010,038 (GRCm39) N99Y possibly damaging Het
Rbm6 G A 9: 107,669,089 (GRCm39) Q608* probably null Het
Scamp1 T A 13: 94,369,598 (GRCm39) I76F probably benign Het
Sez6 G A 11: 77,865,121 (GRCm39) E623K possibly damaging Het
Sirt1 A T 10: 63,158,077 (GRCm39) S446T probably damaging Het
Slc25a54 A G 3: 109,019,404 (GRCm39) K336R probably benign Het
Spag17 G T 3: 99,912,092 (GRCm39) V321F possibly damaging Het
Sstr1 A G 12: 58,259,620 (GRCm39) Y81C probably damaging Het
St8sia4 T C 1: 95,519,525 (GRCm39) K321R probably damaging Het
Stac3 T C 10: 127,343,584 (GRCm39) F242S probably damaging Het
Tanc2 T G 11: 105,758,104 (GRCm39) S622A probably benign Het
Tcf4 G A 18: 69,598,464 (GRCm39) D106N possibly damaging Het
Tfrc T A 16: 32,433,571 (GRCm39) I75N possibly damaging Het
Tigd2 G A 6: 59,187,509 (GRCm39) W125* probably null Het
Tjp1 T C 7: 64,952,745 (GRCm39) T1530A possibly damaging Het
Tmem132a T A 19: 10,844,412 (GRCm39) H62L probably benign Het
Tmem89 T C 9: 108,743,729 (GRCm39) S10P unknown Het
Trrap C T 5: 144,733,961 (GRCm39) P938L probably damaging Het
Unc80 C A 1: 66,545,912 (GRCm39) P488T probably damaging Het
Uri1 C A 7: 37,662,873 (GRCm39) G374C probably damaging Het
Utp20 T C 10: 88,611,180 (GRCm39) N1379S probably damaging Het
Vcan G T 13: 89,852,644 (GRCm39) T772K probably benign Het
Zbtb37 A T 1: 160,847,941 (GRCm39) Y355* probably null Het
Zfp3 A G 11: 70,662,405 (GRCm39) I121M probably benign Het
Zfp629 A T 7: 127,209,547 (GRCm39) L754Q probably damaging Het
Other mutations in Col5a1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01291:Col5a1 APN 2 27,861,456 (GRCm39) splice site probably benign
IGL01340:Col5a1 APN 2 27,850,463 (GRCm39) missense unknown
IGL01938:Col5a1 APN 2 27,886,885 (GRCm39) missense unknown
IGL02167:Col5a1 APN 2 27,908,568 (GRCm39) missense probably benign
IGL02670:Col5a1 APN 2 27,864,727 (GRCm39) missense unknown
IGL02672:Col5a1 APN 2 27,864,727 (GRCm39) missense unknown
IGL02673:Col5a1 APN 2 27,864,727 (GRCm39) missense unknown
IGL02832:Col5a1 APN 2 27,842,352 (GRCm39) missense unknown
IGL03065:Col5a1 APN 2 27,922,757 (GRCm39) missense possibly damaging 0.61
IGL03196:Col5a1 APN 2 27,865,610 (GRCm39) missense unknown
PIT4131001:Col5a1 UTSW 2 27,914,665 (GRCm39) missense probably benign 0.01
PIT4495001:Col5a1 UTSW 2 27,914,788 (GRCm39) missense unknown
R0136:Col5a1 UTSW 2 27,914,843 (GRCm39) missense probably damaging 1.00
R0485:Col5a1 UTSW 2 27,880,109 (GRCm39) splice site probably benign
R0626:Col5a1 UTSW 2 27,818,255 (GRCm39) nonsense probably null
R0666:Col5a1 UTSW 2 27,922,697 (GRCm39) missense probably damaging 1.00
R1268:Col5a1 UTSW 2 27,892,501 (GRCm39) missense unknown
R1302:Col5a1 UTSW 2 27,895,248 (GRCm39) missense probably damaging 1.00
R1416:Col5a1 UTSW 2 27,812,076 (GRCm39) missense unknown
R1466:Col5a1 UTSW 2 27,893,858 (GRCm39) splice site probably benign
R1617:Col5a1 UTSW 2 27,842,393 (GRCm39) missense unknown
R1650:Col5a1 UTSW 2 27,812,171 (GRCm39) missense unknown
R1663:Col5a1 UTSW 2 27,841,488 (GRCm39) missense unknown
R1901:Col5a1 UTSW 2 27,850,456 (GRCm39) missense unknown
R1970:Col5a1 UTSW 2 27,876,766 (GRCm39) missense unknown
R2377:Col5a1 UTSW 2 27,818,189 (GRCm39) missense unknown
R2396:Col5a1 UTSW 2 27,876,741 (GRCm39) missense unknown
R4297:Col5a1 UTSW 2 27,907,216 (GRCm39) critical splice donor site probably null
R4385:Col5a1 UTSW 2 27,914,791 (GRCm39) missense probably damaging 1.00
R4803:Col5a1 UTSW 2 27,901,353 (GRCm39) missense unknown
R4835:Col5a1 UTSW 2 27,915,656 (GRCm39) missense probably damaging 1.00
R4935:Col5a1 UTSW 2 27,914,754 (GRCm39) missense probably damaging 1.00
R4994:Col5a1 UTSW 2 27,922,751 (GRCm39) missense possibly damaging 0.90
R4997:Col5a1 UTSW 2 27,922,794 (GRCm39) nonsense probably null
R5061:Col5a1 UTSW 2 27,842,390 (GRCm39) missense unknown
R5088:Col5a1 UTSW 2 27,908,614 (GRCm39) nonsense probably null
R5089:Col5a1 UTSW 2 27,908,614 (GRCm39) nonsense probably null
R5090:Col5a1 UTSW 2 27,908,614 (GRCm39) nonsense probably null
R5114:Col5a1 UTSW 2 27,915,664 (GRCm39) missense probably damaging 1.00
R5409:Col5a1 UTSW 2 27,850,457 (GRCm39) missense unknown
R5649:Col5a1 UTSW 2 27,841,468 (GRCm39) missense unknown
R5699:Col5a1 UTSW 2 27,887,611 (GRCm39) missense unknown
R5910:Col5a1 UTSW 2 27,926,900 (GRCm39) missense possibly damaging 0.89
R6053:Col5a1 UTSW 2 27,904,389 (GRCm39) unclassified probably benign
R6210:Col5a1 UTSW 2 27,922,633 (GRCm39) missense probably benign 0.04
R6363:Col5a1 UTSW 2 27,818,207 (GRCm39) missense unknown
R6478:Col5a1 UTSW 2 27,842,448 (GRCm39) missense unknown
R6600:Col5a1 UTSW 2 27,887,583 (GRCm39) missense unknown
R7047:Col5a1 UTSW 2 27,818,096 (GRCm39) missense unknown
R7061:Col5a1 UTSW 2 27,915,690 (GRCm39) nonsense probably null
R7131:Col5a1 UTSW 2 27,819,498 (GRCm39) missense unknown
R7202:Col5a1 UTSW 2 27,842,390 (GRCm39) missense unknown
R7270:Col5a1 UTSW 2 27,887,597 (GRCm39) missense unknown
R7385:Col5a1 UTSW 2 27,914,762 (GRCm39) missense unknown
R7492:Col5a1 UTSW 2 27,859,812 (GRCm39) critical splice donor site probably null
R7570:Col5a1 UTSW 2 27,841,395 (GRCm39) missense unknown
R7627:Col5a1 UTSW 2 27,840,665 (GRCm39) nonsense probably null
R8003:Col5a1 UTSW 2 27,848,340 (GRCm39) intron probably benign
R8011:Col5a1 UTSW 2 27,870,533 (GRCm39) splice site probably benign
R8073:Col5a1 UTSW 2 27,852,141 (GRCm39) missense possibly damaging 0.85
R8217:Col5a1 UTSW 2 27,812,135 (GRCm39) missense unknown
R8879:Col5a1 UTSW 2 27,904,170 (GRCm39) missense unknown
R8911:Col5a1 UTSW 2 27,887,630 (GRCm39) critical splice donor site probably null
R9082:Col5a1 UTSW 2 27,852,122 (GRCm39) missense possibly damaging 0.73
R9170:Col5a1 UTSW 2 27,841,363 (GRCm39) missense unknown
R9264:Col5a1 UTSW 2 27,854,123 (GRCm39) missense unknown
R9265:Col5a1 UTSW 2 27,854,123 (GRCm39) missense unknown
R9461:Col5a1 UTSW 2 27,922,616 (GRCm39) missense unknown
R9596:Col5a1 UTSW 2 27,819,551 (GRCm39) nonsense probably null
R9614:Col5a1 UTSW 2 27,879,186 (GRCm39) missense unknown
R9691:Col5a1 UTSW 2 27,842,994 (GRCm39) missense unknown
R9743:Col5a1 UTSW 2 27,864,505 (GRCm39) missense unknown
Z1176:Col5a1 UTSW 2 27,892,529 (GRCm39) missense unknown
Predicted Primers PCR Primer
(F):5'- TATGTGCATGCAGGAAAAGCTTG -3'
(R):5'- TGTAGATCCTTGCAGGTACGG -3'

Sequencing Primer
(F):5'- TGCTGCCAGTCCCTAGAC -3'
(R):5'- CAGGTACGGGCTGGGTTC -3'
Posted On 2021-12-30