Mutagenetix > Incidental Mutation

Incidental Mutation 'R9101:Cmklr1'

691679

Institutional Source

Beutler Lab

Gene Symbol

Cmklr1

Ensembl Gene

ENSMUSG00000042190

Gene Name

chemerin chemokine-like receptor 1

Synonyms

ChemR23, Gpcr27

MMRRC Submission

068915-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.258) question?

Stock #

R9101 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

113750415-113788487 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to C at 113752043 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 319 (H319Q)

Ref Sequence

ENSEMBL: ENSMUSP00000036316 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047936] [ENSMUST00000132065] [ENSMUST00000142854]

AlphaFold

P97468

Predicted Effect

probably benign
Transcript: ENSMUST00000047936
AA Change: H319Q

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000036316
Gene: ENSMUSG00000042190
AA Change: H319Q

Domain	Start	End	E-Value	Type
Pfam:7tm_1	55	314	2.6e-41	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000132065

SMART Domains

Protein: ENSMUSP00000121765
Gene: ENSMUSG00000042190

Domain	Start	End	E-Value	Type
Pfam:7tm_1	55	301	5e-46	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000142854

Meta Mutation Damage Score

0.0846

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

98% (59/60)

MGI Phenotype

PHENOTYPE: Homozygous null mice have defects in immunomodulation of monocyte and neutriphils by chemerin [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam6b	T	C	12: 113,455,376 (GRCm39)	V731A	probably benign	Het
Adamts7	T	C	9: 90,071,794 (GRCm39)		probably null	Het
Afdn	T	C	17: 14,043,706 (GRCm39)	V388A	probably damaging	Het
Alg3	A	G	16: 20,427,599 (GRCm39)	Y113H	possibly damaging	Het
Aox1	C	T	1: 58,371,796 (GRCm39)	P820L	probably benign	Het
Avil	A	G	10: 126,852,873 (GRCm39)	D731G	probably benign	Het
Blvra	C	T	2: 126,927,890 (GRCm39)	L47F	probably damaging	Het
Bmerb1	T	A	16: 13,867,259 (GRCm39)	I39N	probably damaging	Het
Ccdc85c	C	A	12: 108,240,917 (GRCm39)	R159L	unknown	Het
Clcn2	T	C	16: 20,525,979 (GRCm39)	D797G	probably benign	Het
Dclre1a	A	T	19: 56,532,738 (GRCm39)	F619I	possibly damaging	Het
Dnajb1	C	A	8: 84,335,119 (GRCm39)	D53E	probably benign	Het
Dnmt1	T	C	9: 20,852,839 (GRCm39)	D89G	probably damaging	Het
Gck	A	G	11: 5,856,516 (GRCm39)	Y214H	probably damaging	Het
Gm9507	A	G	10: 77,647,650 (GRCm39)	S10P	unknown	Het
Hacd2	G	A	16: 34,920,156 (GRCm39)	V138I	probably benign	Het
Hhip	A	T	8: 80,770,591 (GRCm39)	V272D	probably damaging	Het
Hoga1	A	C	19: 42,048,347 (GRCm39)	T72P	possibly damaging	Het
Idh2	TCCCAGG	T	7: 79,748,079 (GRCm39)		probably benign	Het
Kif21b	G	A	1: 136,078,893 (GRCm39)	G414S	probably damaging	Het
Klk1b5	T	A	7: 43,500,205 (GRCm39)	D264E	probably benign	Het
Lars1	G	A	18: 42,376,942 (GRCm39)	R205C	probably damaging	Het
Ly6a	A	T	15: 74,869,419 (GRCm39)	L12Q	probably null	Het
Mastl	A	G	2: 23,008,449 (GRCm39)	*866Q	probably null	Het
Mpzl3	T	A	9: 44,981,983 (GRCm39)	M217K	possibly damaging	Het
Mroh2b	T	A	15: 4,929,935 (GRCm39)	M7K	probably benign	Het
Mtarc2	T	A	1: 184,554,687 (GRCm39)	R273W	probably null	Het
Nefh	A	G	11: 4,890,925 (GRCm39)	S565P	probably damaging	Het
Nox4	G	A	7: 87,025,448 (GRCm39)	R525Q	probably benign	Het
Nsd1	C	T	13: 55,461,359 (GRCm39)	L2632F		Het
Or10d1	T	A	9: 39,483,805 (GRCm39)	Y250F	probably benign	Het
Or1a1b	C	T	11: 74,097,322 (GRCm39)	C240Y	probably damaging	Het
Or4a71	A	T	2: 89,358,721 (GRCm39)	I11N	possibly damaging	Het
Or51ac3	A	T	7: 103,213,680 (GRCm39)	F269I	possibly damaging	Het
Or51r1	T	C	7: 102,228,137 (GRCm39)	V145A	probably benign	Het
Or5m10b	A	G	2: 85,694,523 (GRCm39)		probably benign	Het
Or5w18	T	C	2: 87,632,924 (GRCm39)	Y60H	probably damaging	Het
Pcdhga6	T	C	18: 37,841,393 (GRCm39)	V371A	possibly damaging	Het
Pdss2	A	G	10: 43,269,945 (GRCm39)	K263E	possibly damaging	Het
Phf3	C	T	1: 30,843,026 (GRCm39)	A1978T	possibly damaging	Het
Phykpl	C	A	11: 51,483,741 (GRCm39)	T207K	probably benign	Het
Pkd2	T	A	5: 104,628,230 (GRCm39)	C435S	probably damaging	Het
Pramel11	T	A	4: 143,623,646 (GRCm39)	N176I	probably benign	Het
Pramel52-ps	G	A	5: 94,531,899 (GRCm39)	C261Y	probably damaging	Het
Prkra	T	A	2: 76,478,184 (GRCm39)	H6L	probably benign	Het
Prpf39	A	G	12: 65,090,078 (GRCm39)	K131E	probably damaging	Het
Prpf40a	A	G	2: 53,035,255 (GRCm39)	V762A	probably benign	Het
Prr27	C	T	5: 87,991,330 (GRCm39)	T314I	probably damaging	Het
Ptges3	A	G	10: 127,907,998 (GRCm39)	D116G	possibly damaging	Het
Rab11fip5	G	T	6: 85,317,675 (GRCm39)	F1071L	probably benign	Het
Rsf1	GCG	GCGACGGCGCCG	7: 97,229,114 (GRCm39)		probably benign	Het
Slc45a3	T	C	1: 131,905,175 (GRCm39)	V66A	possibly damaging	Het
Spata31e5	T	A	1: 28,815,740 (GRCm39)	D764V	probably benign	Het
Ten1	A	G	11: 116,096,562 (GRCm39)	Y72C	probably damaging	Het
Tenm3	A	G	8: 48,745,186 (GRCm39)	L1125S	probably damaging	Het
Thpo	T	A	16: 20,544,557 (GRCm39)	I159F	possibly damaging	Het
Tmppe	T	C	9: 114,234,309 (GRCm39)	S203P	probably damaging	Het
Ttc23l	A	T	15: 10,537,661 (GRCm39)	I203N	probably benign	Het
Vars2	A	G	17: 35,969,980 (GRCm39)	L803P	possibly damaging	Het
Vmn2r110	T	A	17: 20,794,471 (GRCm39)	I733F		Het
Xxylt1	T	C	16: 30,899,745 (GRCm39)	N137D	possibly damaging	Het
Zc3h13	G	A	14: 75,561,042 (GRCm39)	R544Q	unknown	Het
Zfhx4	C	T	3: 5,477,198 (GRCm39)	T3271I	probably benign	Het
Zfp943	T	A	17: 22,212,392 (GRCm39)	C493S	possibly damaging	Het

Other mutations in Cmklr1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01447:Cmklr1	APN	5	113,752,282 (GRCm39)	missense	probably benign	0.04
IGL02246:Cmklr1	APN	5	113,752,461 (GRCm39)	missense	probably benign	0.00
IGL02997:Cmklr1	APN	5	113,752,701 (GRCm39)	missense	probably benign	0.15
R0098:Cmklr1	UTSW	5	113,752,531 (GRCm39)	missense	probably benign	0.00
R0360:Cmklr1	UTSW	5	113,752,578 (GRCm39)	missense	probably damaging	1.00
R0364:Cmklr1	UTSW	5	113,752,578 (GRCm39)	missense	probably damaging	1.00
R1217:Cmklr1	UTSW	5	113,752,107 (GRCm39)	missense	probably damaging	1.00
R1702:Cmklr1	UTSW	5	113,751,903 (GRCm39)	missense	probably benign	0.20
R1862:Cmklr1	UTSW	5	113,752,468 (GRCm39)	missense	probably damaging	0.96
R4131:Cmklr1	UTSW	5	113,752,545 (GRCm39)	missense	probably damaging	0.97
R4132:Cmklr1	UTSW	5	113,752,545 (GRCm39)	missense	probably damaging	0.97
R4611:Cmklr1	UTSW	5	113,752,930 (GRCm39)	missense	probably benign	0.05
R4647:Cmklr1	UTSW	5	113,752,701 (GRCm39)	missense	probably damaging	1.00
R5217:Cmklr1	UTSW	5	113,752,710 (GRCm39)	missense	probably damaging	0.98
R5484:Cmklr1	UTSW	5	113,752,990 (GRCm39)	missense	possibly damaging	0.65
R5486:Cmklr1	UTSW	5	113,752,990 (GRCm39)	missense	possibly damaging	0.65
R5487:Cmklr1	UTSW	5	113,752,990 (GRCm39)	missense	possibly damaging	0.65
R5504:Cmklr1	UTSW	5	113,752,990 (GRCm39)	missense	possibly damaging	0.65
R5505:Cmklr1	UTSW	5	113,752,990 (GRCm39)	missense	possibly damaging	0.65
R6301:Cmklr1	UTSW	5	113,752,999 (GRCm39)	start codon destroyed	possibly damaging	0.72
R6994:Cmklr1	UTSW	5	113,752,983 (GRCm39)	missense	probably damaging	1.00
R7342:Cmklr1	UTSW	5	113,752,354 (GRCm39)	missense	probably benign	0.00
R9034:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9041:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9100:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9109:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9110:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9111:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9137:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9250:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9298:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9299:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9516:Cmklr1	UTSW	5	113,752,341 (GRCm39)	missense	probably benign	0.17
R9521:Cmklr1	UTSW	5	113,752,480 (GRCm39)	missense	probably benign	0.00
Z1176:Cmklr1	UTSW	5	113,751,952 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTCCCAGGTGAGGTTCAGAG -3'
(R):5'- ATCGTCTTCAAGCTGCAGC -3'

Sequencing Primer
(F):5'- CAGAGGGTACTGGTCTCCTTC -3'
(R):5'- GAAGCCCTTCAAGATCATTATCAC -3'

Posted On

2021-12-30