Mutagenetix > Incidental Mutation

Incidental Mutation 'R9123:Cpsf2'

693041

Institutional Source

Beutler Lab

Gene Symbol

Cpsf2

Ensembl Gene

ENSMUSG00000041781

Gene Name

cleavage and polyadenylation specific factor 2

Synonyms

100kDa, Cpsf, 2610024B04Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably essential (E-score: 0.967) question?

Stock #

R9123 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

101942247-101972683 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 101963555 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 428 (D428G)

Ref Sequence

ENSEMBL: ENSMUSP00000047797 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047357]

AlphaFold

O35218

Predicted Effect

probably damaging
Transcript: ENSMUST00000047357
AA Change: D428G

PolyPhen 2 Score 0.957 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000047797
Gene: ENSMUSG00000041781
AA Change: D428G

Domain	Start	End	E-Value	Type
Lactamase_B	17	223	5.22e-1	SMART
Beta-Casp	243	368	1.8e-21	SMART
coiled coil region	380	418	N/A	INTRINSIC
Pfam:RMMBL	527	569	1.2e-14	PFAM
Pfam:CPSF100_C	608	779	5.7e-46	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

98% (56/57)

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcg5	G	A	17: 84,976,425 (GRCm39)	H471Y	probably damaging	Het
Ank2	T	A	3: 126,733,744 (GRCm39)	D622V	probably damaging	Het
Apoe	T	A	7: 19,432,375 (GRCm39)		probably benign	Het
Asz1	T	C	6: 18,054,561 (GRCm39)	E414G	probably benign	Het
Atp2a2	A	T	5: 122,604,918 (GRCm39)	C420*	probably null	Het
Cd84	A	T	1: 171,712,153 (GRCm39)		probably null	Het
Cdca2	T	A	14: 67,917,762 (GRCm39)	R545S	probably benign	Het
Cep250	C	T	2: 155,812,042 (GRCm39)	A446V	unknown	Het
Cib1	T	C	7: 79,877,751 (GRCm39)	D182G	probably damaging	Het
Cspg4b	C	T	13: 113,505,374 (GRCm39)	P2168S		Het
Dap3	T	A	3: 88,837,861 (GRCm39)	T130S	probably benign	Het
Ddb2	T	A	2: 91,064,593 (GRCm39)	K106*	probably null	Het
Ehd2	G	A	7: 15,684,626 (GRCm39)	A391V	probably damaging	Het
Evpl	A	T	11: 116,115,008 (GRCm39)	I894N	possibly damaging	Het
Gabrb2	A	G	11: 42,482,693 (GRCm39)	T184A	probably damaging	Het
Gfpt1	G	A	6: 87,053,248 (GRCm39)	V403I	probably benign	Het
Gli1	A	G	10: 127,167,202 (GRCm39)	S684P	possibly damaging	Het
Gm7276	A	G	18: 77,273,147 (GRCm39)	S196P	unknown	Het
Hoxc10	C	T	15: 102,875,810 (GRCm39)	P173L	probably benign	Het
Hrnr	A	G	3: 93,238,863 (GRCm39)	N3034D	unknown	Het
Kif2c	A	T	4: 117,024,291 (GRCm39)	S359T	probably benign	Het
Lmln	T	G	16: 32,930,202 (GRCm39)	L553R	probably benign	Het
Ltbp2	G	A	12: 84,837,864 (GRCm39)	P1192L	probably benign	Het
Mettl1	T	A	10: 126,880,911 (GRCm39)	V191D	possibly damaging	Het
Mical2	A	C	7: 111,870,589 (GRCm39)	K26T	possibly damaging	Het
Myl1	A	T	1: 66,973,675 (GRCm39)		probably null	Het
Nfat5	A	G	8: 108,078,141 (GRCm39)	T427A	probably damaging	Het
Noa1	T	C	5: 77,457,038 (GRCm39)	Y289C	possibly damaging	Het
Or5d14	C	T	2: 87,880,294 (GRCm39)	V225M	probably damaging	Het
Or8b49	T	A	9: 38,506,108 (GRCm39)	I197K	probably damaging	Het
Piezo2	A	G	18: 63,178,589 (GRCm39)	I1776T	probably benign	Het
Ppp1r7	A	G	1: 93,285,497 (GRCm39)	I246V	probably benign	Het
Ppp4c	T	A	7: 126,386,739 (GRCm39)	E116V	probably damaging	Het
Psme2	T	A	14: 55,828,302 (GRCm39)	K15N	possibly damaging	Het
Retreg1	C	T	15: 25,968,618 (GRCm39)	R125C	probably damaging	Het
Rnf145	G	T	11: 44,450,819 (GRCm39)	R381L	probably damaging	Het
Rsf1	G	GACGGCGGCA	7: 97,229,116 (GRCm39)		probably benign	Het
Ryr1	G	A	7: 28,771,229 (GRCm39)	T2604I	probably damaging	Het
Sag	T	C	1: 87,751,043 (GRCm39)	S170P	probably damaging	Het
Sema3b	T	A	9: 107,478,173 (GRCm39)	N404I	possibly damaging	Het
Serpina1b	A	T	12: 103,696,566 (GRCm39)	L281Q	probably damaging	Het
Slc22a1	T	A	17: 12,878,598 (GRCm39)	T372S	probably benign	Het
Slco6d1	A	T	1: 98,423,919 (GRCm39)	N524Y	probably damaging	Het
Smarca2	T	A	19: 26,693,583 (GRCm39)	D1262E	possibly damaging	Het
Syne2	A	T	12: 76,040,838 (GRCm39)	H3832L	probably damaging	Het
Tarbp1	G	T	8: 127,174,202 (GRCm39)	T868K	possibly damaging	Het
Trp63	C	T	16: 25,639,247 (GRCm39)	A145V	probably damaging	Het
Tsc2	C	T	17: 24,823,802 (GRCm39)	R1001K	probably null	Het
Ttc39b	T	C	4: 83,189,444 (GRCm39)	D30G	probably damaging	Het
Usf3	A	G	16: 44,041,030 (GRCm39)	T1837A	probably benign	Het
Usp25	T	A	16: 76,911,969 (GRCm39)		probably null	Het
Vmn1r27	G	A	6: 58,192,416 (GRCm39)	T196I	probably benign	Het
Vrk3	C	T	7: 44,407,254 (GRCm39)	S75F	possibly damaging	Het
Washc5	T	C	15: 59,209,134 (GRCm39)	Y1030C	probably damaging	Het
Wdr47	T	C	3: 108,526,106 (GRCm39)	F210L	probably damaging	Het
Zfp853	G	A	5: 143,274,496 (GRCm39)	Q390*	probably null	Het
Zfyve9	A	T	4: 108,575,760 (GRCm39)	D440E	probably benign	Het

Other mutations in Cpsf2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00737:Cpsf2	APN	12	101,949,725 (GRCm39)	missense	probably damaging	1.00
IGL01114:Cpsf2	APN	12	101,956,098 (GRCm39)	missense	possibly damaging	0.93
IGL01121:Cpsf2	APN	12	101,954,965 (GRCm39)	missense	probably damaging	1.00
IGL01377:Cpsf2	APN	12	101,953,640 (GRCm39)	splice site	probably null
IGL01465:Cpsf2	APN	12	101,963,592 (GRCm39)	missense	probably damaging	1.00
IGL02861:Cpsf2	APN	12	101,965,825 (GRCm39)	missense	probably benign	0.00
R0469:Cpsf2	UTSW	12	101,955,045 (GRCm39)	missense	probably damaging	1.00
R0504:Cpsf2	UTSW	12	101,956,262 (GRCm39)	missense	probably damaging	1.00
R0510:Cpsf2	UTSW	12	101,955,045 (GRCm39)	missense	probably damaging	1.00
R0626:Cpsf2	UTSW	12	101,951,490 (GRCm39)	missense	probably benign	0.09
R0697:Cpsf2	UTSW	12	101,949,443 (GRCm39)	missense	probably benign	0.34
R0837:Cpsf2	UTSW	12	101,963,501 (GRCm39)	splice site	probably benign
R1475:Cpsf2	UTSW	12	101,951,495 (GRCm39)	missense	probably damaging	1.00
R1709:Cpsf2	UTSW	12	101,965,801 (GRCm39)	missense	probably damaging	1.00
R1974:Cpsf2	UTSW	12	101,956,306 (GRCm39)	missense	probably benign	0.33
R1996:Cpsf2	UTSW	12	101,964,867 (GRCm39)	missense	probably benign	0.18
R2063:Cpsf2	UTSW	12	101,949,722 (GRCm39)	missense	probably damaging	1.00
R2164:Cpsf2	UTSW	12	101,951,594 (GRCm39)	missense	probably damaging	1.00
R2228:Cpsf2	UTSW	12	101,956,088 (GRCm39)	missense	probably benign	0.00
R3082:Cpsf2	UTSW	12	101,955,069 (GRCm39)	missense	probably damaging	0.99
R3732:Cpsf2	UTSW	12	101,953,567 (GRCm39)	missense	probably damaging	0.99
R3732:Cpsf2	UTSW	12	101,953,567 (GRCm39)	missense	probably damaging	0.99
R3733:Cpsf2	UTSW	12	101,953,567 (GRCm39)	missense	probably damaging	0.99
R4627:Cpsf2	UTSW	12	101,956,154 (GRCm39)	missense	probably benign	0.18
R4665:Cpsf2	UTSW	12	101,949,466 (GRCm39)	missense	probably damaging	1.00
R4666:Cpsf2	UTSW	12	101,949,466 (GRCm39)	missense	probably damaging	1.00
R4765:Cpsf2	UTSW	12	101,963,699 (GRCm39)	missense	probably damaging	1.00
R4777:Cpsf2	UTSW	12	101,963,091 (GRCm39)	missense	probably damaging	0.99
R4847:Cpsf2	UTSW	12	101,963,561 (GRCm39)	missense	probably benign	0.18
R4923:Cpsf2	UTSW	12	101,948,243 (GRCm39)	missense	probably benign
R4975:Cpsf2	UTSW	12	101,949,752 (GRCm39)	missense	probably damaging	1.00
R5239:Cpsf2	UTSW	12	101,953,532 (GRCm39)	nonsense	probably null
R5440:Cpsf2	UTSW	12	101,963,138 (GRCm39)	missense	probably benign
R5601:Cpsf2	UTSW	12	101,951,614 (GRCm39)	splice site	probably null
R5603:Cpsf2	UTSW	12	101,964,890 (GRCm39)	missense	probably benign	0.02
R5841:Cpsf2	UTSW	12	101,951,497 (GRCm39)	missense	probably damaging	0.99
R6153:Cpsf2	UTSW	12	101,965,619 (GRCm39)	splice site	probably null
R6663:Cpsf2	UTSW	12	101,965,852 (GRCm39)	missense	probably damaging	1.00
R7451:Cpsf2	UTSW	12	101,967,051 (GRCm39)	missense	possibly damaging	0.52
R8357:Cpsf2	UTSW	12	101,968,929 (GRCm39)	missense	probably damaging	0.99
R8457:Cpsf2	UTSW	12	101,968,929 (GRCm39)	missense	probably damaging	0.99
R9433:Cpsf2	UTSW	12	101,948,252 (GRCm39)	missense	probably damaging	1.00
V8831:Cpsf2	UTSW	12	101,969,400 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTGTAGGACTTAGCACTCAACG -3'
(R):5'- GCTCACGTACTTGATGATCTCG -3'

Sequencing Primer
(F):5'- CTTAAATTTCCTTAGGGCTCTATGAC -3'
(R):5'- ACGTACTTGATGATCTCGCCATAC -3'

Posted On

2022-01-20