Mutagenetix > Incidental Mutation

Incidental Mutation 'R9129:Rab11fip5'

693465

Institutional Source

Beutler Lab

Gene Symbol

Rab11fip5

Ensembl Gene

ENSMUSG00000051343

Gene Name

RAB11 family interacting protein 5 (class I)

Synonyms

D6Ertd32e, RIP11, 9130206P09Rik, GAF1

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9129 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

85311944-85351616 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 85317892 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 999 (V999A)

Ref Sequence

ENSEMBL: ENSMUSP00000145402 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060837] [ENSMUST00000204087]

AlphaFold

Q8R361

Predicted Effect

probably benign
Transcript: ENSMUST00000060837

SMART Domains

Protein: ENSMUSP00000058305
Gene: ENSMUSG00000051343

Domain	Start	End	E-Value	Type
C2	20	143	8.7e-7	SMART
low complexity region	248	265	N/A	INTRINSIC
low complexity region	313	322	N/A	INTRINSIC
low complexity region	356	391	N/A	INTRINSIC
Pfam:RBD-FIP	593	640	5.1e-23	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000204087
AA Change: V999A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000145402
Gene: ENSMUSG00000051343
AA Change: V999A

Domain	Start	End	E-Value	Type
C2	20	143	5.8e-9	SMART
low complexity region	248	265	N/A	INTRINSIC
low complexity region	313	322	N/A	INTRINSIC
low complexity region	356	391	N/A	INTRINSIC
low complexity region	529	547	N/A	INTRINSIC
low complexity region	560	568	N/A	INTRINSIC
low complexity region	603	627	N/A	INTRINSIC
low complexity region	687	692	N/A	INTRINSIC
low complexity region	713	732	N/A	INTRINSIC
low complexity region	852	887	N/A	INTRINSIC
low complexity region	893	901	N/A	INTRINSIC
low complexity region	1037	1052	N/A	INTRINSIC
low complexity region	1068	1106	N/A	INTRINSIC
low complexity region	1115	1149	N/A	INTRINSIC
Pfam:RBD-FIP	1266	1313	8.5e-20	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

99% (68/69)

MGI Phenotype

PHENOTYPE: Mice homozygous for a floxed allele are viable and fertile. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2ml1	A	G	6: 128,523,223 (GRCm39)	S1238P	probably damaging	Het
Akap9	T	C	5: 4,119,089 (GRCm39)	L3532S	probably benign	Het
Ankfn1	A	G	11: 89,312,042 (GRCm39)	L701P		Het
Aph1b	A	C	9: 66,686,595 (GRCm39)	I225S	probably benign	Het
Asic4	A	T	1: 75,446,469 (GRCm39)	H337L	possibly damaging	Het
Atp8b3	T	C	10: 80,368,412 (GRCm39)	E187G	probably damaging	Het
Atp9a	A	G	2: 168,517,205 (GRCm39)	M376T	probably benign	Het
Bod1l	G	T	5: 41,976,220 (GRCm39)	T1698K	probably damaging	Het
Cacna2d4	T	C	6: 119,313,415 (GRCm39)		probably null	Het
Catsper1	C	A	19: 5,390,402 (GRCm39)		probably benign	Het
Cd248	T	C	19: 5,120,140 (GRCm39)	S663P	probably benign	Het
Crispld2	A	T	8: 120,737,488 (GRCm39)	M80L	possibly damaging	Het
Cwc22	G	A	2: 77,726,659 (GRCm39)	Q807*	probably null	Het
Cyp2a4	T	C	7: 26,014,136 (GRCm39)	Y438H	probably benign	Het
Cyp2b23	A	T	7: 26,381,189 (GRCm39)		probably benign	Het
Dsp	T	A	13: 38,377,126 (GRCm39)	V1637D	probably benign	Het
Elovl1	A	T	4: 118,289,156 (GRCm39)	Y227F	possibly damaging	Het
Ern1	T	C	11: 106,300,946 (GRCm39)	K483E	probably benign	Het
Fzd2	T	C	11: 102,496,465 (GRCm39)	F303S	probably benign	Het
Gm9944	A	T	4: 144,179,763 (GRCm39)	V42D	unknown	Het
Grik5	G	A	7: 24,767,429 (GRCm39)		probably benign	Het
Hdac4	T	C	1: 91,909,929 (GRCm39)	D445G	probably benign	Het
Hinfp	C	T	9: 44,209,062 (GRCm39)	R352H	probably damaging	Het
Hrnr	A	G	3: 93,231,277 (GRCm39)	H505R	unknown	Het
Hsfy2	C	T	1: 56,675,752 (GRCm39)	D262N	probably benign	Het
Hspa4	G	A	11: 53,174,463 (GRCm39)	Q186*	probably null	Het
Ipo8	T	C	6: 148,700,125 (GRCm39)	H584R	probably benign	Het
Krtap8-1	T	A	16: 89,284,636 (GRCm39)	R54*	probably null	Het
Lama4	T	A	10: 38,932,887 (GRCm39)	Y588N	probably benign	Het
Lekr1	T	A	3: 65,591,426 (GRCm39)	Y54*	probably null	Het
Ltbp2	G	A	12: 84,837,864 (GRCm39)	P1192L	probably benign	Het
Lypd10	A	G	7: 24,413,170 (GRCm39)	D163G	probably benign	Het
Lzts3	A	T	2: 130,476,865 (GRCm39)	Y528N	possibly damaging	Het
Mdn1	T	A	4: 32,676,812 (GRCm39)	V628E	probably benign	Het
Mgat5b	A	C	11: 116,859,348 (GRCm39)		probably benign	Het
Mical2	A	C	7: 111,870,589 (GRCm39)	K26T	possibly damaging	Het
Mllt10	C	T	2: 18,167,404 (GRCm39)	S443L	probably benign	Het
Mtf1	G	A	4: 124,698,913 (GRCm39)		probably benign	Het
Myom2	T	C	8: 15,154,068 (GRCm39)	F669L	probably damaging	Het
Nlrp9c	A	T	7: 26,077,428 (GRCm39)		probably null	Het
Nog	G	C	11: 89,192,602 (GRCm39)	S82W	probably damaging	Het
Ntrk2	A	G	13: 59,276,084 (GRCm39)	T795A	probably benign	Het
Or4a78	A	G	2: 89,497,930 (GRCm39)	F100S	probably damaging	Het
Or56a3b	G	A	7: 104,771,223 (GRCm39)	M186I	probably benign	Het
Or5m3	A	T	2: 85,838,356 (GRCm39)	M79L		Het
Or5w17	A	T	2: 87,584,048 (GRCm39)	F96L	probably benign	Het
Pira12	C	A	7: 3,898,500 (GRCm39)		probably null	Het
Prl6a1	A	T	13: 27,502,064 (GRCm39)	I144L		Het
Serpinb6b	TTGTTTCTGT	TTGT	13: 33,162,139 (GRCm39)		probably benign	Het
Shisa6	A	G	11: 66,110,853 (GRCm39)	M296T	probably benign	Het
Slc18a1	T	A	8: 69,491,533 (GRCm39)	T494S	probably benign	Het
Slc22a29	T	G	19: 8,146,669 (GRCm39)	I378L	probably benign	Het
Slc23a2	C	T	2: 131,920,332 (GRCm39)		probably null	Het
Slc2a7	G	T	4: 150,243,001 (GRCm39)	R274L	probably benign	Het
Spta1	A	G	1: 174,058,911 (GRCm39)	T1949A	possibly damaging	Het
Szt2	A	G	4: 118,221,866 (GRCm39)	V3339A	unknown	Het
Tcp10a	G	A	17: 7,593,935 (GRCm39)	D87N	probably benign	Het
Tgm5	T	G	2: 120,877,270 (GRCm39)	Q638P	probably damaging	Het
Tmem145	A	G	7: 25,014,265 (GRCm39)	T460A	possibly damaging	Het
Ttc3	A	T	16: 94,185,208 (GRCm39)	M50L	probably benign	Het
Ush1c	A	G	7: 45,854,629 (GRCm39)	S708P	probably benign	Het
Vmn1r217	T	A	13: 23,298,876 (GRCm39)	T9S	probably benign	Het
Vmn1r26	T	C	6: 57,985,373 (GRCm39)	Y272C		Het
Vmn1r75	G	T	7: 11,614,513 (GRCm39)	A82S	probably benign	Het
Vmn2r117	T	A	17: 23,678,918 (GRCm39)	R769*	probably null	Het
Vps13b	C	A	15: 35,448,793 (GRCm39)	A589E	probably damaging	Het
Vps13d	G	A	4: 144,898,249 (GRCm39)	R304W		Het
Vps41	A	G	13: 19,011,775 (GRCm39)	E294G	probably benign	Het
Xpo7	T	C	14: 70,909,113 (GRCm39)	T802A	probably benign	Het
Ylpm1	T	A	12: 85,104,052 (GRCm39)	D2022E		Het
Zfp433	T	A	10: 81,555,724 (GRCm39)	C75*	probably null	Het
Zyg11a	A	T	4: 108,039,009 (GRCm39)	S737T	probably benign	Het

Other mutations in Rab11fip5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02282:Rab11fip5	APN	6	85,314,534 (GRCm39)	missense	probably damaging	1.00
IGL02471:Rab11fip5	APN	6	85,325,207 (GRCm39)	missense	probably damaging	0.99
IGL02725:Rab11fip5	APN	6	85,351,471 (GRCm39)	missense	probably damaging	0.99
IGL02737:Rab11fip5	APN	6	85,325,540 (GRCm39)	missense	probably damaging	1.00
PIT4812001:Rab11fip5	UTSW	6	85,318,540 (GRCm39)	missense	probably benign	0.38
R0627:Rab11fip5	UTSW	6	85,325,033 (GRCm39)	missense	probably benign	0.05
R1652:Rab11fip5	UTSW	6	85,325,279 (GRCm39)	missense	probably damaging	0.97
R1961:Rab11fip5	UTSW	6	85,325,973 (GRCm39)	missense	possibly damaging	0.87
R2106:Rab11fip5	UTSW	6	85,351,369 (GRCm39)	missense	probably damaging	0.98
R2142:Rab11fip5	UTSW	6	85,314,210 (GRCm39)	critical splice acceptor site	probably null
R4729:Rab11fip5	UTSW	6	85,351,249 (GRCm39)	missense	probably damaging	0.99
R5001:Rab11fip5	UTSW	6	85,324,788 (GRCm39)	missense	probably damaging	1.00
R5116:Rab11fip5	UTSW	6	85,325,789 (GRCm39)	missense	probably damaging	1.00
R5506:Rab11fip5	UTSW	6	85,351,119 (GRCm39)	missense	probably damaging	1.00
R5801:Rab11fip5	UTSW	6	85,314,582 (GRCm39)	missense	probably damaging	0.99
R6338:Rab11fip5	UTSW	6	85,318,360 (GRCm39)	missense	possibly damaging	0.94
R6696:Rab11fip5	UTSW	6	85,318,928 (GRCm39)	missense	possibly damaging	0.65
R6763:Rab11fip5	UTSW	6	85,319,152 (GRCm39)	missense	probably benign	0.02
R6880:Rab11fip5	UTSW	6	85,325,827 (GRCm39)	missense	probably damaging	0.99
R6932:Rab11fip5	UTSW	6	85,318,540 (GRCm39)	missense	probably benign	0.38
R7042:Rab11fip5	UTSW	6	85,351,110 (GRCm39)	missense	possibly damaging	0.82
R7112:Rab11fip5	UTSW	6	85,325,176 (GRCm39)	missense	probably damaging	1.00
R7197:Rab11fip5	UTSW	6	85,319,137 (GRCm39)	missense	probably damaging	1.00
R7384:Rab11fip5	UTSW	6	85,325,312 (GRCm39)	missense	possibly damaging	0.47
R7395:Rab11fip5	UTSW	6	85,318,850 (GRCm39)	missense	probably benign
R7451:Rab11fip5	UTSW	6	85,318,538 (GRCm39)	missense	probably benign	0.06
R7482:Rab11fip5	UTSW	6	85,317,760 (GRCm39)	missense	probably benign	0.41
R8435:Rab11fip5	UTSW	6	85,314,522 (GRCm39)	missense	possibly damaging	0.86
R8674:Rab11fip5	UTSW	6	85,318,910 (GRCm39)	missense	probably benign	0.00
R9040:Rab11fip5	UTSW	6	85,324,915 (GRCm39)	missense	probably damaging	1.00
R9101:Rab11fip5	UTSW	6	85,317,675 (GRCm39)	missense	probably benign
R9281:Rab11fip5	UTSW	6	85,318,834 (GRCm39)	missense	probably benign
R9294:Rab11fip5	UTSW	6	85,325,692 (GRCm39)	missense	probably benign	0.18
R9487:Rab11fip5	UTSW	6	85,324,913 (GRCm39)	missense	possibly damaging	0.88
Z1177:Rab11fip5	UTSW	6	85,317,452 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TGGCTTTCCTGACATAAGAAGG -3'
(R):5'- TCCCCAAGAGTCTAAGGAGG -3'

Sequencing Primer
(F):5'- GCTTTCCTGACATAAGAAGGAATTGG -3'
(R):5'- TCTAAGGAGGAATGGGTAAATCC -3'

Posted On

2022-01-20