Mutagenetix > Incidental Mutation

Incidental Mutation 'R9143:Tigd2'

694442

Institutional Source

Beutler Lab

Gene Symbol

Tigd2

Ensembl Gene

ENSMUSG00000049232

Gene Name

tigger transposable element derived 2

Synonyms

3632410O17Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.100) question?

Stock #

R9143 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

59185855-59189018 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 59188310 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 392 (N392K)

Ref Sequence

ENSEMBL: ENSMUSP00000057223 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000062626]

AlphaFold

Q0VBL1

Predicted Effect

probably benign
Transcript: ENSMUST00000062626
AA Change: N392K

PolyPhen 2 Score 0.105 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000057223
Gene: ENSMUSG00000049232
AA Change: N392K

Domain	Start	End	E-Value	Type
Pfam:CENP-B_N	4	54	6e-17	PFAM
CENPB	73	139	5.78e-19	SMART
Pfam:DDE_1	206	385	2.2e-52	PFAM
low complexity region	504	519	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (44/44)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the tigger subfamily of the pogo superfamily of DNA-mediated transposons in humans. These proteins are related to DNA transposons found in fungi and nematodes, and more distantly to the Tc1 and mariner transposases. They are also very similar to the major mammalian centromere protein B. The exact function of this gene is not known. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 43 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9830107B12Rik	T	C	17: 48,452,605 (GRCm39)	I111M	probably damaging	Het
Arid2	A	G	15: 96,259,715 (GRCm39)	I292V	probably damaging	Het
Atl3	T	C	19: 7,509,408 (GRCm39)	S379P	probably benign	Het
Btbd16	C	T	7: 130,417,516 (GRCm39)	R344C	probably damaging	Het
Ccnt1	G	A	15: 98,441,688 (GRCm39)	H527Y	probably damaging	Het
Ces1d	T	A	8: 93,912,707 (GRCm39)	I244F	probably damaging	Het
Clec16a	C	A	16: 10,428,964 (GRCm39)	S449R	probably damaging	Het
Cngb3	T	A	4: 19,375,190 (GRCm39)		probably benign	Het
Col15a1	G	C	4: 47,288,200 (GRCm39)		probably benign	Het
Cubn	A	T	2: 13,337,276 (GRCm39)		probably benign	Het
Dsp	C	A	13: 38,377,337 (GRCm39)	S1707R	probably benign	Het
E330034G19Rik	A	T	14: 24,347,004 (GRCm39)	Q162L	possibly damaging	Het
F830045P16Rik	T	C	2: 129,316,502 (GRCm39)	N69S	probably benign	Het
Galnt10	C	T	11: 57,612,146 (GRCm39)	T62I	probably benign	Het
Gm19668	T	C	10: 77,634,960 (GRCm39)	D3G	unknown	Het
Hace1	T	A	10: 45,562,764 (GRCm39)	F760I	probably damaging	Het
Il20rb	A	G	9: 100,356,936 (GRCm39)	Y65H	probably damaging	Het
Insl5	C	A	4: 102,883,841 (GRCm39)	V27L	probably benign	Het
Jade2	T	C	11: 51,715,930 (GRCm39)	D425G	probably benign	Het
Lipg	T	C	18: 75,087,272 (GRCm39)	K183R	probably benign	Het
Lrrc59	T	A	11: 94,525,456 (GRCm39)	L84Q	probably damaging	Het
Lyst	T	A	13: 13,835,750 (GRCm39)	F1811I	probably damaging	Het
Mcf2l	A	G	8: 13,062,883 (GRCm39)		probably benign	Het
Nfil3	A	G	13: 53,121,792 (GRCm39)	S371P	probably benign	Het
Nin	A	G	12: 70,137,349 (GRCm39)	S76P		Het
Nuak1	C	T	10: 84,213,951 (GRCm39)		probably null	Het
Or8b47	A	T	9: 38,427,917 (GRCm39)		probably benign	Het
Or8g19	A	T	9: 39,055,722 (GRCm39)	I109F	possibly damaging	Het
Pld1	A	G	3: 28,132,643 (GRCm39)		probably benign	Het
Rcvrn	T	C	11: 67,590,890 (GRCm39)	F158S	possibly damaging	Het
Skap2	T	C	6: 51,885,409 (GRCm39)	T200A	probably benign	Het
Slc6a1	G	T	6: 114,292,503 (GRCm39)		probably benign	Het
Spag17	C	T	3: 99,934,906 (GRCm39)	T704M	probably benign	Het
Stxbp1	A	G	2: 32,688,157 (GRCm39)	S503P	probably damaging	Het
Susd5	A	T	9: 113,924,879 (GRCm39)	E254V	possibly damaging	Het
Sv2a	T	C	3: 96,097,983 (GRCm39)	S529P	possibly damaging	Het
Tmem131l	A	G	3: 83,842,220 (GRCm39)	L525P	probably benign	Het
Tonsl	T	C	15: 76,514,824 (GRCm39)	M1127V	probably damaging	Het
Top2a	T	A	11: 98,900,705 (GRCm39)	E585V	probably benign	Het
Usp19	T	G	9: 108,375,398 (GRCm39)	L847R	probably damaging	Het
Vta1	T	C	10: 14,551,776 (GRCm39)	H141R	possibly damaging	Het
Zfp950	G	T	19: 61,108,778 (GRCm39)	P102T	probably benign	Het
Zzz3	T	C	3: 152,163,908 (GRCm39)	I869T	probably benign	Het

Other mutations in Tigd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02304:Tigd2	APN	6	59,188,683 (GRCm39)	nonsense	probably null
IGL03356:Tigd2	APN	6	59,188,690 (GRCm39)	missense	probably benign	0.04
PIT1430001:Tigd2	UTSW	6	59,188,233 (GRCm39)	missense	probably damaging	1.00
R0048:Tigd2	UTSW	6	59,188,369 (GRCm39)	missense	possibly damaging	0.86
R0387:Tigd2	UTSW	6	59,188,143 (GRCm39)	missense	probably benign	0.00
R0523:Tigd2	UTSW	6	59,187,358 (GRCm39)	missense	probably benign	0.30
R0636:Tigd2	UTSW	6	59,188,272 (GRCm39)	missense	possibly damaging	0.66
R1171:Tigd2	UTSW	6	59,188,361 (GRCm39)	missense	possibly damaging	0.73
R2440:Tigd2	UTSW	6	59,186,980 (GRCm39)	start gained	probably benign
R4327:Tigd2	UTSW	6	59,187,562 (GRCm39)	missense	probably benign	0.36
R4731:Tigd2	UTSW	6	59,188,400 (GRCm39)	missense	probably benign	0.00
R4732:Tigd2	UTSW	6	59,188,400 (GRCm39)	missense	probably benign	0.00
R4733:Tigd2	UTSW	6	59,188,400 (GRCm39)	missense	probably benign	0.00
R5005:Tigd2	UTSW	6	59,188,131 (GRCm39)	missense	probably benign	0.06
R5028:Tigd2	UTSW	6	59,188,205 (GRCm39)	nonsense	probably null
R5248:Tigd2	UTSW	6	59,188,138 (GRCm39)	missense	probably damaging	1.00
R6006:Tigd2	UTSW	6	59,187,762 (GRCm39)	missense	possibly damaging	0.45
R7099:Tigd2	UTSW	6	59,187,166 (GRCm39)	missense	probably damaging	1.00
R7261:Tigd2	UTSW	6	59,188,052 (GRCm39)	missense	probably benign	0.02
R7553:Tigd2	UTSW	6	59,188,564 (GRCm39)	missense	probably benign	0.04
R7688:Tigd2	UTSW	6	59,187,382 (GRCm39)	missense	probably damaging	1.00
R8002:Tigd2	UTSW	6	59,187,494 (GRCm39)	missense	probably damaging	1.00
R8734:Tigd2	UTSW	6	59,187,184 (GRCm39)	missense	probably damaging	1.00
R9007:Tigd2	UTSW	6	59,187,887 (GRCm39)	missense	probably damaging	1.00
R9095:Tigd2	UTSW	6	59,187,509 (GRCm39)	nonsense	probably null
Z1177:Tigd2	UTSW	6	59,188,515 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- AGATATTACCGAGCAGGACTTATC -3'
(R):5'- CTGCTTTCCTAGTTTTCCTAGAAGG -3'

Sequencing Primer
(F):5'- CTTATCCAGAAGTACATGGATGAAG -3'
(R):5'- GGTCTGCAGCACCTACAATGTC -3'

Posted On

2022-01-20