Mutagenetix > Incidental Mutation

Incidental Mutation 'R9166:Dlc1'

696068

Institutional Source

Beutler Lab

Gene Symbol

Dlc1

Ensembl Gene

ENSMUSG00000031523

Gene Name

deleted in liver cancer 1

Synonyms

Arhgap7, A730069N07Rik, STARD12, p122-RhoGAP

MMRRC Submission

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R9166 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

36567751-36953143 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 36599435 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Lysine at position 15 (E15K)

Ref Sequence

ENSEMBL: ENSMUSP00000033923 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033923] [ENSMUST00000098826] [ENSMUST00000163663]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000033923
AA Change: E15K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000033923
Gene: ENSMUSG00000031523
AA Change: E15K

Domain	Start	End	E-Value	Type
Pfam:SAM_2	15	76	2.2e-7	PFAM
low complexity region	154	174	N/A	INTRINSIC
low complexity region	238	250	N/A	INTRINSIC
low complexity region	298	325	N/A	INTRINSIC
low complexity region	427	441	N/A	INTRINSIC
RhoGAP	653	845	8.82e-59	SMART
START	887	1088	3.93e-59	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000098826
AA Change: E49K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000096425
Gene: ENSMUSG00000031523
AA Change: E49K

Domain	Start	End	E-Value	Type
Pfam:SAM_2	49	110	5.9e-8	PFAM
low complexity region	188	208	N/A	INTRINSIC
low complexity region	272	284	N/A	INTRINSIC
low complexity region	332	359	N/A	INTRINSIC
low complexity region	461	475	N/A	INTRINSIC
RhoGAP	687	879	8.82e-59	SMART
START	921	1122	3.93e-59	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000163663
AA Change: E466K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000132812
Gene: ENSMUSG00000031523
AA Change: E466K

Domain	Start	End	E-Value	Type
low complexity region	353	369	N/A	INTRINSIC
low complexity region	388	403	N/A	INTRINSIC
Pfam:SAM_2	466	527	1.2e-7	PFAM
low complexity region	605	625	N/A	INTRINSIC
low complexity region	689	701	N/A	INTRINSIC
low complexity region	749	776	N/A	INTRINSIC
low complexity region	878	892	N/A	INTRINSIC
RhoGAP	1104	1296	8.82e-59	SMART
START	1338	1539	3.93e-59	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

100% (70/70)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a GTPase-activating protein (GAP) that is a member of the rhoGAP family of proteins which play a role in the regulation of small GTP-binding proteins. GAP family proteins participate in signaling pathways that regulate cell processes involved in cytoskeletal changes. This gene functions as a tumor suppressor gene in a number of common cancers, including prostate, lung, colorectal, and breast cancers. Multiple transcript variants due to alternative promoters and alternative splicing have been found for this gene.[provided by RefSeq, Apr 2010]
PHENOTYPE: Homozygous mutants die by E10.5 with variable defects in the neural tube, heart, brain and placenta. Mouse embryonic fibroblasts homozygous for an activated conditional allele exhibti increased sensitivity to Ras-induced transformation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2010111I01Rik	G	A	13: 63,171,048		probably null	Het
4932438A13Rik	T	A	3: 36,987,367	N2630K	probably damaging	Het
4932438H23Rik	A	G	16: 91,056,158	L30P	possibly damaging	Het
Adgrb1	A	C	15: 74,548,626	M875L	probably benign	Het
Amot	A	T	X: 145,461,749	L435H		Het
Ankrd13c	T	A	3: 157,999,720	S427T	probably benign	Het
Ap3b1	A	C	13: 94,471,728	Y569S	probably damaging	Het
Bco2	A	G	9: 50,536,367	V352A	probably benign	Het
Cacnb1	T	A	11: 98,019,708	D48V	probably damaging	Het
Cdr2l	C	A	11: 115,392,711	Q132K	probably benign	Het
Chrd	T	C	16: 20,735,822	M377T	probably benign	Het
Coq7	T	C	7: 118,510,142	T228A	unknown	Het
D7Ertd443e	G	A	7: 134,298,319	T438I	probably benign	Het
Dlgap5	C	T	14: 47,413,749	R109Q	probably damaging	Het
Dysf	T	C	6: 84,149,977	V1359A	probably damaging	Het
E2f7	C	T	10: 110,782,224	P717S	probably benign	Het
Elmo2	T	C	2: 165,290,518	D669G	probably benign	Het
Epha6	A	G	16: 60,604,875	V125A	probably benign	Het
Erg	G	T	16: 95,389,948	H119N	probably benign	Het
Fam13b	T	C	18: 34,462,199	S371G	probably benign	Het
Fancg	G	C	4: 43,006,800	Q297E	probably benign	Het
Gas2	A	G	7: 51,936,575	E145G	possibly damaging	Het
Gas7	T	C	11: 67,670,620	V218A	probably benign	Het
Gm9833	A	G	3: 10,088,789	N206S	probably benign	Het
Gm9970	A	G	5: 31,241,001	S78P	unknown	Het
Hectd4	A	C	5: 121,308,627	D259A	probably damaging	Het
Hoxb2	T	G	11: 96,353,513	S317A	probably damaging	Het
Hspg2	T	C	4: 137,542,874	L2381P	probably damaging	Het
Irf4	A	T	13: 30,757,501	H280L	probably benign	Het
Irf7	A	G	7: 141,264,753	V142A	probably benign	Het
Kat7	T	C	11: 95,300,102	I94V	probably benign	Het
Kera	T	A	10: 97,612,968	I350K	possibly damaging	Het
Klf15	T	C	6: 90,466,970	S176P	probably benign	Het
Lrrc59	C	A	11: 94,632,133	T53N	probably benign	Het
Morn5	T	C	2: 36,055,012	Y83H	probably damaging	Het
Neil3	A	C	8: 53,605,687	M273R	probably damaging	Het
Ngfr	A	T	11: 95,574,221	V267E	possibly damaging	Het
Nudc	T	C	4: 133,545,854	D11G	probably damaging	Het
Olfr1254	T	A	2: 89,788,947	N135I	probably damaging	Het
Olfr31	A	T	14: 14,329,059	D316V	probably benign	Het
Pde8a	C	T	7: 81,332,871	T746I	probably damaging	Het
Pik3cg	C	T	12: 32,192,214	G966R	probably damaging	Het
Ppfibp1	A	G	6: 147,019,482	T573A	probably damaging	Het
Ppp2r5a	C	A	1: 191,396,307	R37L	probably benign	Het
Prpf8	T	C	11: 75,496,514	F1207S	possibly damaging	Het
Prtg	A	T	9: 72,856,825	I527F	probably damaging	Het
Pspc1	A	G	14: 56,761,848	M317T	probably damaging	Het
Ptpru	C	T	4: 131,797,869	V768I	probably benign	Het
Ptx4	A	G	17: 25,124,572		probably null	Het
Ralgapb	T	C	2: 158,432,922		probably null	Het
Rhobtb2	C	A	14: 69,797,254	G174V	probably damaging	Het
Sdad1	G	T	5: 92,298,221	S285*	probably null	Het
Sema4f	G	T	6: 82,913,645	S727*	probably null	Het
Sik1	A	G	17: 31,850,753	F241L	probably damaging	Het
Slc8b1	T	C	5: 120,524,031	S279P	probably benign	Het
Slco4a1	A	G	2: 180,464,241	E72G	probably benign	Het
Smok3c	A	T	5: 138,065,519	T423S	possibly damaging	Het
Sorcs3	T	C	19: 48,796,372	V1078A	probably benign	Het
Sptb	A	G	12: 76,627,002	V337A	probably damaging	Het
Tet2	C	A	3: 133,468,172	G1443V	probably damaging	Het
Ticam2	A	T	18: 46,560,981	L13H	probably damaging	Het
Tnrc6a	A	G	7: 123,187,401	E1562G	probably damaging	Het
Trim24	A	T	6: 37,957,139	K742N	probably damaging	Het
Trim56	A	T	5: 137,113,897	V255E	probably damaging	Het
Trmt12	A	G	15: 58,872,759	E2G	probably benign	Het
Tubd1	A	T	11: 86,561,265	T353S	probably benign	Het
Vim	T	C	2: 13,574,745	V105A	probably benign	Het
Vmn2r58	A	T	7: 41,864,007	V404E	probably damaging	Het
Wdr62	G	A	7: 30,242,449	P1115L	probably damaging	Het
Wfdc12	G	T	2: 164,190,273	C32*	probably null	Het
Zfp750	T	A	11: 121,513,154	R298S	probably damaging	Het

Other mutations in Dlc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00493:Dlc1	APN	8	36570282	utr 3 prime	probably benign
IGL00807:Dlc1	APN	8	36572848	missense	probably benign	0.01
IGL00924:Dlc1	APN	8	36938214	missense	probably benign
IGL01349:Dlc1	APN	8	36583824	missense	probably damaging	0.96
IGL01419:Dlc1	APN	8	36850217	missense	probably benign	0.02
IGL01871:Dlc1	APN	8	36850180	missense	probably damaging	0.99
IGL01937:Dlc1	APN	8	36850191	missense	probably benign	0.25
IGL02525:Dlc1	APN	8	36579646	missense	probably damaging	1.00
IGL02696:Dlc1	APN	8	36574172	missense	possibly damaging	0.65
IGL02826:Dlc1	APN	8	36570275	utr 3 prime	probably benign
IGL03029:Dlc1	APN	8	36571262	splice site	probably null
BB001:Dlc1	UTSW	8	36571416	missense	probably benign	0.03
BB011:Dlc1	UTSW	8	36571416	missense	probably benign	0.03
IGL02835:Dlc1	UTSW	8	36583901	missense	probably damaging	1.00
R0068:Dlc1	UTSW	8	36937721	missense	probably benign
R0068:Dlc1	UTSW	8	36937721	missense	probably benign
R0164:Dlc1	UTSW	8	36599440	missense	probably damaging	0.96
R0164:Dlc1	UTSW	8	36599440	missense	probably damaging	0.96
R0218:Dlc1	UTSW	8	36850229	missense	probably benign
R0419:Dlc1	UTSW	8	36583586	missense	possibly damaging	0.69
R0513:Dlc1	UTSW	8	36584010	missense	probably damaging	1.00
R0645:Dlc1	UTSW	8	36574049	missense	possibly damaging	0.60
R0646:Dlc1	UTSW	8	36858051	missense	probably benign
R0727:Dlc1	UTSW	8	36572674	missense	probably damaging	0.99
R0792:Dlc1	UTSW	8	36938548	missense	probably benign	0.00
R1061:Dlc1	UTSW	8	36858051	missense	probably benign
R1221:Dlc1	UTSW	8	36584831	missense	probably benign
R1440:Dlc1	UTSW	8	36593463	splice site	probably benign
R1501:Dlc1	UTSW	8	36938148	missense	probably benign	0.06
R1606:Dlc1	UTSW	8	36850252	missense	probably benign
R1707:Dlc1	UTSW	8	36937609	missense	probably benign	0.03
R1750:Dlc1	UTSW	8	36858090	splice site	probably null
R1762:Dlc1	UTSW	8	36937585	missense	probably benign	0.25
R2041:Dlc1	UTSW	8	36582768	missense	probably damaging	1.00
R2055:Dlc1	UTSW	8	36593381	missense	probably damaging	0.98
R2091:Dlc1	UTSW	8	36937609	missense	probably benign	0.00
R2987:Dlc1	UTSW	8	36574152	missense	probably damaging	0.97
R4285:Dlc1	UTSW	8	36574128	missense	possibly damaging	0.49
R4294:Dlc1	UTSW	8	36584753	missense	possibly damaging	0.47
R4631:Dlc1	UTSW	8	36937558	critical splice donor site	probably null
R4828:Dlc1	UTSW	8	36850246	missense	possibly damaging	0.69
R4867:Dlc1	UTSW	8	36584645	missense	probably benign	0.01
R4902:Dlc1	UTSW	8	36577131	missense	probably damaging	1.00
R5067:Dlc1	UTSW	8	36584493	missense	probably benign	0.04
R5068:Dlc1	UTSW	8	36938030	missense	probably benign
R5198:Dlc1	UTSW	8	36938398	missense	probably damaging	1.00
R5471:Dlc1	UTSW	8	36584725	missense	probably benign	0.26
R5668:Dlc1	UTSW	8	36937501	unclassified	probably benign
R5915:Dlc1	UTSW	8	36938675	utr 5 prime	probably benign
R6323:Dlc1	UTSW	8	36938383	missense	possibly damaging	0.62
R6655:Dlc1	UTSW	8	36572716	missense	probably damaging	1.00
R6908:Dlc1	UTSW	8	36937687	missense	probably benign	0.02
R6914:Dlc1	UTSW	8	36938210	missense	probably benign
R6942:Dlc1	UTSW	8	36938210	missense	probably benign
R7269:Dlc1	UTSW	8	36579253	missense	probably damaging	1.00
R7271:Dlc1	UTSW	8	36582800	missense	probably damaging	0.99
R7462:Dlc1	UTSW	8	36937964	missense	unknown
R7548:Dlc1	UTSW	8	36584655	missense	probably benign	0.00
R7649:Dlc1	UTSW	8	36582740	missense	probably damaging	1.00
R7924:Dlc1	UTSW	8	36571416	missense	probably benign	0.03
R7960:Dlc1	UTSW	8	36937835	missense	probably benign
R7984:Dlc1	UTSW	8	36938318	missense	possibly damaging	0.85
R8227:Dlc1	UTSW	8	36572671	missense	probably damaging	1.00
R8491:Dlc1	UTSW	8	36584846	missense	probably benign
R8526:Dlc1	UTSW	8	36937814	missense	probably benign	0.00
R8715:Dlc1	UTSW	8	36938641	start gained	probably benign
R8887:Dlc1	UTSW	8	36584327	missense	probably benign	0.34
R8972:Dlc1	UTSW	8	36938240	nonsense	probably null
R8988:Dlc1	UTSW	8	36572843	missense	probably damaging	0.96
R9031:Dlc1	UTSW	8	36937901	missense	possibly damaging	0.95
R9080:Dlc1	UTSW	8	36584852	missense	probably benign
R9092:Dlc1	UTSW	8	36732706	missense	probably benign	0.03
R9096:Dlc1	UTSW	8	36613567	missense	probably benign	0.00
R9097:Dlc1	UTSW	8	36613567	missense	probably benign	0.00
R9187:Dlc1	UTSW	8	36938632	start codon destroyed	probably null	1.00
R9240:Dlc1	UTSW	8	36584851	missense	probably benign
R9276:Dlc1	UTSW	8	36579404	missense	possibly damaging	0.83
R9325:Dlc1	UTSW	8	36571364	missense	possibly damaging	0.83
Z1176:Dlc1	UTSW	8	36584211	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGATGACTCCGTTATTATCAAGGGTC -3'
(R):5'- TAAGCCATCTGGTGTCGAGC -3'

Sequencing Primer
(F):5'- TTTGAATGGAGTCATGGATACTTATC -3'
(R):5'- ATCTGGTGTCGAGCTCCTC -3'

Posted On

2022-02-07