Mutagenetix > Incidental Mutation

Incidental Mutation 'R9170:Prdm13'

696330

Institutional Source

Beutler Lab

Gene Symbol

Prdm13

Ensembl Gene

ENSMUSG00000040478

Gene Name

PR domain containing 13

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9170 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

21677480-21685963 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to G at 21679659 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Proline at position 277 (R277P)

Ref Sequence

ENSEMBL: ENSMUSP00000092761 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000076206] [ENSMUST00000095141]

AlphaFold

E9PZZ1

Predicted Effect

unknown
Transcript: ENSMUST00000076206
AA Change: R229P

SMART Domains

Protein: ENSMUSP00000075562
Gene: ENSMUSG00000040478
AA Change: R229P

Domain	Start	End	E-Value	Type
Blast:SET	2	118	4e-72	BLAST
PDB:3EP0\|B	56	132	1e-8	PDB
ZnF_C2H2	137	159	3.34e-2	SMART
low complexity region	204	220	N/A	INTRINSIC
low complexity region	231	252	N/A	INTRINSIC
low complexity region	267	275	N/A	INTRINSIC
low complexity region	302	335	N/A	INTRINSIC
low complexity region	336	350	N/A	INTRINSIC
low complexity region	353	370	N/A	INTRINSIC
low complexity region	392	404	N/A	INTRINSIC
low complexity region	546	571	N/A	INTRINSIC
ZnF_C2H2	572	594	4.4e-2	SMART
ZnF_C2H2	600	622	1.92e-2	SMART
ZnF_C2H2	629	652	2.79e-4	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000095141
AA Change: R277P

SMART Domains

Protein: ENSMUSP00000092761
Gene: ENSMUSG00000040478
AA Change: R277P

Domain	Start	End	E-Value	Type
Blast:SET	42	166	1e-73	BLAST
PDB:3EP0\|B	104	180	1e-8	PDB
ZnF_C2H2	185	207	3.34e-2	SMART
low complexity region	252	268	N/A	INTRINSIC
low complexity region	279	300	N/A	INTRINSIC
low complexity region	315	323	N/A	INTRINSIC
low complexity region	350	383	N/A	INTRINSIC
low complexity region	384	398	N/A	INTRINSIC
low complexity region	401	418	N/A	INTRINSIC
low complexity region	440	452	N/A	INTRINSIC
low complexity region	594	619	N/A	INTRINSIC
ZnF_C2H2	620	642	4.4e-2	SMART
ZnF_C2H2	648	670	1.92e-2	SMART
ZnF_C2H2	677	700	2.79e-4	SMART

Meta Mutation Damage Score

0.1411

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

98% (61/62)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele show a specific reduction in the number of GABAergic and glycinergic amacrine cells, a thin retinal inner nuclear layer, altered retinal inner plexiform layer morphology, and abnormally increased spatial, temporal, and contrast sensitivities in optokinetic reponses. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam4	T	C	12: 81,466,516 (GRCm39)	K702E	probably benign	Het
Agbl1	T	C	7: 75,985,069 (GRCm39)	I162T		Het
Agpat2	A	T	2: 26,487,230 (GRCm39)	I101N	possibly damaging	Het
Amot	A	T	X: 144,244,745 (GRCm39)	L435H		Het
Arhgap32	G	A	9: 32,162,039 (GRCm39)	R330H	possibly damaging	Het
Asb4	T	A	6: 5,390,775 (GRCm39)	I56N	probably benign	Het
Atp2a2	C	T	5: 122,604,087 (GRCm39)	V449M	possibly damaging	Het
Bend4	A	G	5: 67,575,080 (GRCm39)	L267P	probably damaging	Het
Catspere2	T	A	1: 177,967,949 (GRCm39)	N745K	probably benign	Het
Celf2	A	G	2: 6,554,646 (GRCm39)	F484L	possibly damaging	Het
Chd3	T	C	11: 69,241,648 (GRCm39)	D1495G	possibly damaging	Het
Chrna3	A	T	9: 54,933,671 (GRCm39)	V8D	unknown	Het
Cog3	T	C	14: 75,966,802 (GRCm39)	Y466C	probably damaging	Het
Col5a1	A	G	2: 27,841,363 (GRCm39)	E328G	unknown	Het
Col7a1	A	G	9: 108,785,707 (GRCm39)	Y392C	unknown	Het
Crtc3	A	T	7: 80,248,697 (GRCm39)	N255K	probably damaging	Het
Dnaaf1	T	C	8: 120,302,195 (GRCm39)	I32T	probably benign	Het
Dner	A	T	1: 84,512,647 (GRCm39)	C307S	probably damaging	Het
Dzip3	T	C	16: 48,772,401 (GRCm39)	K423E	possibly damaging	Het
Eif2b4	A	G	5: 31,345,393 (GRCm39)	S414P	probably damaging	Het
Elp4	T	C	2: 105,624,891 (GRCm39)	E334G	probably damaging	Het
Emilin2	T	A	17: 71,587,689 (GRCm39)	N141I	probably benign	Het
Fstl1	T	A	16: 37,647,140 (GRCm39)	V170E	probably damaging	Het
Fxn	A	G	19: 24,244,687 (GRCm39)	I151T	probably damaging	Het
Gtf3c4	A	T	2: 28,730,214 (GRCm39)	V9E	possibly damaging	Het
Ino80d	A	G	1: 63,132,607 (GRCm39)	S19P	probably damaging	Het
Kank3	T	G	17: 34,037,242 (GRCm39)	L370R	probably damaging	Het
Large1	T	A	8: 73,542,645 (GRCm39)	Y693F	probably benign	Het
Lig4	C	A	8: 10,022,202 (GRCm39)	W526L	probably damaging	Het
Mib1	C	T	18: 10,726,437 (GRCm39)	P45S	probably benign	Het
Ndufaf6	T	C	4: 11,070,301 (GRCm39)	K107E	probably benign	Het
Nf1	T	C	11: 79,436,291 (GRCm39)	L1977P	probably damaging	Het
Nme4	G	T	17: 26,314,389 (GRCm39)	A13E	probably benign	Het
Or52s6	G	A	7: 103,091,850 (GRCm39)	P160L	probably damaging	Het
Or52z15	T	A	7: 103,332,404 (GRCm39)	F160I	probably benign	Het
Pappa	G	A	4: 65,258,962 (GRCm39)	R1570Q	probably damaging	Het
Parp6	G	A	9: 59,531,213 (GRCm39)	A32T		Het
Pclo	A	G	5: 14,731,068 (GRCm39)	Q64R		Het
Pde8a	C	T	7: 80,982,619 (GRCm39)	T746I	probably damaging	Het
Perm1	TGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCT	TGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCT	4: 156,302,525 (GRCm39)		probably benign	Het
Pramel21	T	C	4: 143,341,600 (GRCm39)	S10P	possibly damaging	Het
Prf1	A	C	10: 61,136,216 (GRCm39)	D164A	probably damaging	Het
Rarres1	A	G	3: 67,386,924 (GRCm39)	V226A	probably damaging	Het
Rest	GGGGGCCTGCCCCTCCCACGGGGCCTGCCCCTCCCACGGGGCCTGCCCCTCCCACGGAGCCTGCCCCTCCCACGGGGC	GGGGGCCTGCCCCTCCCACGGGGCCTGCCCCTCCCACGGAGCCTGCCCCTCCCACGGGGC	5: 77,429,651 (GRCm39)		probably benign	Het
Rnf123	A	G	9: 107,948,375 (GRCm39)	L106P	probably damaging	Het
Scnn1b	A	T	7: 121,511,326 (GRCm39)	T338S	probably benign	Het
Sfi1	A	ATCTTCCCAAAGCCAGTGC	11: 3,103,384 (GRCm39)		probably benign	Het
Slc9a5	T	C	8: 106,080,139 (GRCm39)	V94A	probably damaging	Het
Slco4a1	A	G	2: 180,106,478 (GRCm39)	D220G	probably benign	Het
Spata31e2	T	A	1: 26,723,485 (GRCm39)	Q565L	possibly damaging	Het
Sult1c2	T	C	17: 54,269,200 (GRCm39)	D272G	possibly damaging	Het
Tgm1	T	C	14: 55,946,355 (GRCm39)	N427S	probably damaging	Het
Themis	C	A	10: 28,658,233 (GRCm39)	T420N	probably benign	Het
Tnni3	A	T	7: 4,521,376 (GRCm39)	F209L	probably damaging	Het
Ttn	T	A	2: 76,745,912 (GRCm39)	S5046C	probably damaging	Het
Tubb2a	T	A	13: 34,260,628 (GRCm39)	I24L	probably benign	Het
Uevld	C	A	7: 46,587,746 (GRCm39)	G318V	probably damaging	Het
Unkl	T	C	17: 25,448,350 (GRCm39)	S308P	probably benign	Het
Vmn1r159	C	A	7: 22,542,765 (GRCm39)	C89F	probably damaging	Het
Wee2	T	G	6: 40,437,977 (GRCm39)	S302A	probably benign	Het
Ydjc	T	C	16: 16,965,666 (GRCm39)	C144R	probably benign	Het
Zc3h12c	A	G	9: 52,027,419 (GRCm39)	S667P	probably benign	Het
Zfp280b	T	A	10: 75,874,651 (GRCm39)	Y177N	probably benign	Het
Zfp354b	C	T	11: 50,814,362 (GRCm39)	E188K	probably benign	Het

Other mutations in Prdm13

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02940:Prdm13	APN	4	21,683,421 (GRCm39)	nonsense	probably null
IGL03211:Prdm13	APN	4	21,678,492 (GRCm39)	missense	probably damaging	1.00
R0363:Prdm13	UTSW	4	21,679,737 (GRCm39)	missense	unknown
R0512:Prdm13	UTSW	4	21,678,490 (GRCm39)	missense	probably damaging	1.00
R0726:Prdm13	UTSW	4	21,683,914 (GRCm39)	missense	unknown
R1056:Prdm13	UTSW	4	21,678,544 (GRCm39)	missense	probably damaging	1.00
R1433:Prdm13	UTSW	4	21,678,909 (GRCm39)	missense	probably damaging	1.00
R2005:Prdm13	UTSW	4	21,685,695 (GRCm39)	utr 5 prime	probably benign
R2292:Prdm13	UTSW	4	21,683,914 (GRCm39)	missense	unknown
R2382:Prdm13	UTSW	4	21,678,277 (GRCm39)	missense	possibly damaging	0.73
R3620:Prdm13	UTSW	4	21,683,532 (GRCm39)	missense	unknown
R4039:Prdm13	UTSW	4	21,685,774 (GRCm39)	utr 5 prime	probably benign
R4417:Prdm13	UTSW	4	21,678,756 (GRCm39)	missense	probably benign	0.39
R4453:Prdm13	UTSW	4	21,679,464 (GRCm39)	missense	unknown
R4850:Prdm13	UTSW	4	21,678,243 (GRCm39)	missense	possibly damaging	0.92
R4864:Prdm13	UTSW	4	21,685,543 (GRCm39)	missense	unknown
R4934:Prdm13	UTSW	4	21,678,223 (GRCm39)	utr 3 prime	probably benign
R5138:Prdm13	UTSW	4	21,679,507 (GRCm39)	missense	unknown
R5304:Prdm13	UTSW	4	21,678,984 (GRCm39)	missense	probably damaging	1.00
R5394:Prdm13	UTSW	4	21,679,455 (GRCm39)	missense	unknown
R5909:Prdm13	UTSW	4	21,683,894 (GRCm39)	missense	unknown
R5964:Prdm13	UTSW	4	21,683,852 (GRCm39)	nonsense	probably null
R6261:Prdm13	UTSW	4	21,678,366 (GRCm39)	missense	probably damaging	1.00
R7166:Prdm13	UTSW	4	21,683,528 (GRCm39)	missense	unknown
R7175:Prdm13	UTSW	4	21,679,473 (GRCm39)	missense	unknown
R7549:Prdm13	UTSW	4	21,679,072 (GRCm39)	missense	probably damaging	1.00
R7966:Prdm13	UTSW	4	21,679,932 (GRCm39)	missense	unknown
R8319:Prdm13	UTSW	4	21,679,327 (GRCm39)	missense	unknown
R8326:Prdm13	UTSW	4	21,679,557 (GRCm39)	missense	unknown
R8701:Prdm13	UTSW	4	21,678,615 (GRCm39)	missense	probably damaging	1.00
R8924:Prdm13	UTSW	4	21,679,125 (GRCm39)	missense	possibly damaging	0.94
R8947:Prdm13	UTSW	4	21,678,817 (GRCm39)	missense	probably damaging	1.00
R9165:Prdm13	UTSW	4	21,679,659 (GRCm39)	missense	unknown
R9168:Prdm13	UTSW	4	21,679,659 (GRCm39)	missense	unknown
R9171:Prdm13	UTSW	4	21,679,659 (GRCm39)	missense	unknown
Z1176:Prdm13	UTSW	4	21,679,518 (GRCm39)	missense	unknown
Z1177:Prdm13	UTSW	4	21,679,623 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- TTGAAAGCCGAGCGCACG -3'
(R):5'- GGAGGACCTTTCGCTACCC -3'

Sequencing Primer
(F):5'- ACGCCTGGGTAGAATGGC -3'
(R):5'- GAGGACCTTTCGCTACCCTAACAG -3'

Posted On

2022-02-07