Mutagenetix > Incidental Mutation

Incidental Mutation 'R9172:Rmdn3'

696448

Institutional Source

Beutler Lab

Gene Symbol

Rmdn3

Ensembl Gene

ENSMUSG00000070730

Gene Name

regulator of microtubule dynamics 3

Synonyms

Fam82a2, 1200015F23Rik

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9172 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

118967482-118987515 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 118968863 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 443 (K443E)

Ref Sequence

ENSEMBL: ENSMUSP00000092283 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028795] [ENSMUST00000094695] [ENSMUST00000152327]

AlphaFold

Q3UJU9

Predicted Effect

probably benign
Transcript: ENSMUST00000028795

SMART Domains

Protein: ENSMUSP00000028795
Gene: ENSMUSG00000027323

Domain	Start	End	E-Value	Type
HhH1	58	77	1.08e0	SMART
AAA	119	306	8.27e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000094695
AA Change: K443E

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000092283
Gene: ENSMUSG00000070730
AA Change: K443E

Domain	Start	End	E-Value	Type
transmembrane domain	13	35	N/A	INTRINSIC
coiled coil region	91	122	N/A	INTRINSIC
low complexity region	135	148	N/A	INTRINSIC
low complexity region	216	234	N/A	INTRINSIC
SCOP:d1hxia_	354	445	1e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000151406

SMART Domains

Protein: ENSMUSP00000117939
Gene: ENSMUSG00000027323

Domain	Start	End	E-Value	Type
Pfam:Rad51	1	196	5.4e-103	PFAM
Pfam:AAA_25	2	152	1.9e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000152327

SMART Domains

Protein: ENSMUSP00000119101
Gene: ENSMUSG00000027323

Domain	Start	End	E-Value	Type
HhH1	58	77	1.08e0	SMART
Pfam:Rad51	83	218	2.6e-71	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

100% (63/63)

MGI Phenotype

PHENOTYPE: Phenotypic analysis of mice homozygous for a gene trap allele indicates this mutation has no notable phenotype in any parameter tested. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Accsl	A	T	2: 93,691,833 (GRCm39)	L332Q	probably damaging	Het
Adcy1	A	G	11: 7,110,317 (GRCm39)	N855D	probably damaging	Het
Adgrl3	T	A	5: 81,922,251 (GRCm39)	C1199S	probably benign	Het
Alyref	G	A	11: 120,486,842 (GRCm39)	R140C	probably benign	Het
Arhgap26	A	T	18: 39,378,382 (GRCm39)	I92F	probably damaging	Het
Atp9b	G	A	18: 80,960,993 (GRCm39)	R73*	probably null	Het
Btaf1	G	A	19: 36,977,630 (GRCm39)	A1483T	probably damaging	Het
Cmtr2	T	C	8: 110,948,761 (GRCm39)	L357P	probably damaging	Het
Commd7	A	T	2: 153,470,474 (GRCm39)	L51Q	possibly damaging	Het
Cpd	T	A	11: 76,675,252 (GRCm39)	I1290L	probably benign	Het
Cry2	C	A	2: 92,243,993 (GRCm39)	E393D	probably damaging	Het
Ctsm	A	T	13: 61,685,643 (GRCm39)	M74K		Het
Dnai7	A	G	6: 145,123,175 (GRCm39)	F564L	probably benign	Het
Dync2h1	T	C	9: 7,031,771 (GRCm39)	Y3491C	probably damaging	Het
Erc1	A	C	6: 119,801,842 (GRCm39)	N58K	possibly damaging	Het
Fbxw21	T	C	9: 108,975,764 (GRCm39)	T211A	probably benign	Het
Fcsk	A	G	8: 111,610,557 (GRCm39)	W949R	probably damaging	Het
Fry	T	C	5: 150,336,793 (GRCm39)	V1388A	probably benign	Het
Gca	T	G	2: 62,520,368 (GRCm39)	I176S	probably damaging	Het
Gimap7	A	T	6: 48,700,761 (GRCm39)	K116*	probably null	Het
Gm40460	ACAACCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG	ACAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG	7: 141,794,447 (GRCm39)		probably benign	Het
Gm9195	A	C	14: 72,711,154 (GRCm39)	L428R	probably damaging	Het
Grin2b	A	G	6: 135,756,255 (GRCm39)	I490T	possibly damaging	Het
Kif24	T	C	4: 41,400,442 (GRCm39)	T499A	probably benign	Het
Mbtps1	G	A	8: 120,260,108 (GRCm39)	T413I	probably damaging	Het
Med4	A	T	14: 73,751,365 (GRCm39)	S105C	probably benign	Het
Mgat1	G	A	11: 49,151,910 (GRCm39)	R131Q	probably damaging	Het
Mroh4	T	C	15: 74,477,961 (GRCm39)	*984W	probably null	Het
Mybpc1	T	C	10: 88,379,615 (GRCm39)	E628G	possibly damaging	Het
Myh8	C	T	11: 67,183,260 (GRCm39)	P713L	possibly damaging	Het
Myo7a	T	C	7: 97,732,369 (GRCm39)	D706G	probably benign	Het
Nbas	T	A	12: 13,424,751 (GRCm39)	C997S	possibly damaging	Het
Nkx2-1	C	A	12: 56,581,752 (GRCm39)	G32C	probably damaging	Het
Npas3	A	G	12: 54,112,653 (GRCm39)	T466A	probably benign	Het
Opa1	C	T	16: 29,439,232 (GRCm39)	R683C	probably benign	Het
Opa3	C	T	7: 18,989,466 (GRCm39)	R110C	probably damaging	Het
Or5p63	T	C	7: 107,811,169 (GRCm39)	E189G	probably benign	Het
Or8k38	T	A	2: 86,487,879 (GRCm39)	I308L	probably benign	Het
Ppfibp2	T	A	7: 107,337,525 (GRCm39)	L609*	probably null	Het
Pygo2	T	A	3: 89,340,617 (GRCm39)	D338E	possibly damaging	Het
Pzp	A	T	6: 128,502,172 (GRCm39)	M59K	probably benign	Het
Reln	A	G	5: 22,155,815 (GRCm39)		probably null	Het
Ripor1	A	G	8: 106,347,833 (GRCm39)	D1097G	unknown	Het
Rnf145	A	G	11: 44,448,262 (GRCm39)	D373G	possibly damaging	Het
Sec23b	A	T	2: 144,401,179 (GRCm39)	E13D	probably benign	Het
Semp2l1	G	T	1: 32,585,165 (GRCm39)	H248Q	probably benign	Het
Slc39a6	A	G	18: 24,715,399 (GRCm39)	F707S	probably damaging	Het
Sox11	G	A	12: 27,391,536 (GRCm39)	A291V	possibly damaging	Het
Spart	T	A	3: 55,032,267 (GRCm39)	V367D	possibly damaging	Het
Spata31e3	A	G	13: 50,401,417 (GRCm39)	F303S	probably benign	Het
Strap	A	T	6: 137,718,365 (GRCm39)	K156N	probably benign	Het
Stxbp5	T	A	10: 9,645,152 (GRCm39)	I951F	possibly damaging	Het
Taar7a	T	C	10: 23,868,677 (GRCm39)	I235V	probably benign	Het
Tek	T	A	4: 94,692,583 (GRCm39)	N230K	probably benign	Het
Tyw1	T	A	5: 130,325,520 (GRCm39)	C469*	probably null	Het
Vcan	T	C	13: 89,828,050 (GRCm39)	H3132R	probably damaging	Het
Vmn2r24	A	G	6: 123,783,432 (GRCm39)	D544G	probably damaging	Het
Vmn2r3	A	T	3: 64,186,403 (GRCm39)	M94K	possibly damaging	Het
Vps33a	T	C	5: 123,674,604 (GRCm39)	T388A	probably benign	Het
Vta1	A	G	10: 14,551,743 (GRCm39)	I152T	probably damaging	Het
Vtcn1	A	G	3: 100,799,865 (GRCm39)	D242G	probably benign	Het
Zfp12	T	A	5: 143,231,220 (GRCm39)	C548S	probably damaging	Het
Zfp263	A	G	16: 3,567,323 (GRCm39)	D546G	probably benign	Het
Zfp324	T	A	7: 12,704,689 (GRCm39)	C293S	probably damaging	Het
Zfp747l1	T	C	7: 126,984,626 (GRCm39)	K159E	probably benign	Het
Zscan4c	A	T	7: 10,743,819 (GRCm39)	I473F	possibly damaging	Het

Other mutations in Rmdn3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01374:Rmdn3	APN	2	118,984,428 (GRCm39)	missense	probably damaging	1.00
IGL01684:Rmdn3	APN	2	118,978,055 (GRCm39)	missense	probably damaging	1.00
IGL02892:Rmdn3	APN	2	118,984,561 (GRCm39)	missense	probably benign	0.00
R0534:Rmdn3	UTSW	2	118,976,851 (GRCm39)	missense	probably benign	0.00
R1126:Rmdn3	UTSW	2	118,984,476 (GRCm39)	missense	probably benign	0.01
R2332:Rmdn3	UTSW	2	118,984,008 (GRCm39)	unclassified	probably benign
R3850:Rmdn3	UTSW	2	118,986,903 (GRCm39)	missense	possibly damaging	0.65
R5034:Rmdn3	UTSW	2	118,978,058 (GRCm39)	missense	probably damaging	1.00
R5221:Rmdn3	UTSW	2	118,986,935 (GRCm39)	missense	probably damaging	1.00
R5942:Rmdn3	UTSW	2	118,978,058 (GRCm39)	missense	probably damaging	1.00
R6049:Rmdn3	UTSW	2	118,983,906 (GRCm39)	missense	probably damaging	1.00
R6188:Rmdn3	UTSW	2	118,969,831 (GRCm39)	critical splice donor site	probably null
R7011:Rmdn3	UTSW	2	118,968,904 (GRCm39)	missense	probably damaging	1.00
R7181:Rmdn3	UTSW	2	118,969,849 (GRCm39)	missense	probably damaging	1.00
R8277:Rmdn3	UTSW	2	118,976,905 (GRCm39)	missense	probably damaging	1.00
R8721:Rmdn3	UTSW	2	118,969,846 (GRCm39)	missense	possibly damaging	0.87
R9144:Rmdn3	UTSW	2	118,969,847 (GRCm39)	missense	probably benign	0.21
R9317:Rmdn3	UTSW	2	118,986,991 (GRCm39)	missense	unknown
R9727:Rmdn3	UTSW	2	118,968,827 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- ACCATATGAGTCCTGGCATATGC -3'
(R):5'- GTCCCAATAGCTCAGACAACTG -3'

Sequencing Primer
(F):5'- ATATGCCGTGGCCTCCC -3'
(R):5'- GTTACAGGTGTAAGCCGCCATATC -3'

Posted On

2022-02-07