Incidental Mutation 'R9172:Vmn2r3'
ID 696452
Institutional Source Beutler Lab
Gene Symbol Vmn2r3
Ensembl Gene ENSMUSG00000091572
Gene Name vomeronasal 2, receptor 3
Synonyms EG637004
MMRRC Submission
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R9172 (G1)
Quality Score 225.009
Status Validated
Chromosome 3
Chromosomal Location 64166225-64197130 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 64186403 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Lysine at position 94 (M94K)
Ref Sequence ENSEMBL: ENSMUSP00000134891 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000170244] [ENSMUST00000176328]
AlphaFold H3BJ88
Predicted Effect possibly damaging
Transcript: ENSMUST00000170244
AA Change: M66K

PolyPhen 2 Score 0.788 (Sensitivity: 0.85; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000126165
Gene: ENSMUSG00000091572
AA Change: M66K

DomainStartEndE-ValueType
Pfam:ANF_receptor 64 479 4e-64 PFAM
Pfam:NCD3G 521 574 1.1e-17 PFAM
Pfam:7tm_3 605 842 2.9e-75 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000176328
AA Change: M94K

PolyPhen 2 Score 0.788 (Sensitivity: 0.85; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000134891
Gene: ENSMUSG00000091572
AA Change: M94K

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
Pfam:ANF_receptor 92 507 9.5e-66 PFAM
Pfam:NCD3G 549 602 8.8e-17 PFAM
Pfam:7tm_3 635 869 8.5e-48 PFAM
Meta Mutation Damage Score 0.1712 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.2%
Validation Efficiency 100% (63/63)
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Accsl A T 2: 93,691,833 (GRCm39) L332Q probably damaging Het
Adcy1 A G 11: 7,110,317 (GRCm39) N855D probably damaging Het
Adgrl3 T A 5: 81,922,251 (GRCm39) C1199S probably benign Het
Alyref G A 11: 120,486,842 (GRCm39) R140C probably benign Het
Arhgap26 A T 18: 39,378,382 (GRCm39) I92F probably damaging Het
Atp9b G A 18: 80,960,993 (GRCm39) R73* probably null Het
Btaf1 G A 19: 36,977,630 (GRCm39) A1483T probably damaging Het
Cmtr2 T C 8: 110,948,761 (GRCm39) L357P probably damaging Het
Commd7 A T 2: 153,470,474 (GRCm39) L51Q possibly damaging Het
Cpd T A 11: 76,675,252 (GRCm39) I1290L probably benign Het
Cry2 C A 2: 92,243,993 (GRCm39) E393D probably damaging Het
Ctsm A T 13: 61,685,643 (GRCm39) M74K Het
Dnai7 A G 6: 145,123,175 (GRCm39) F564L probably benign Het
Dync2h1 T C 9: 7,031,771 (GRCm39) Y3491C probably damaging Het
Erc1 A C 6: 119,801,842 (GRCm39) N58K possibly damaging Het
Fbxw21 T C 9: 108,975,764 (GRCm39) T211A probably benign Het
Fcsk A G 8: 111,610,557 (GRCm39) W949R probably damaging Het
Fry T C 5: 150,336,793 (GRCm39) V1388A probably benign Het
Gca T G 2: 62,520,368 (GRCm39) I176S probably damaging Het
Gimap7 A T 6: 48,700,761 (GRCm39) K116* probably null Het
Gm40460 ACAACCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG ACAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG 7: 141,794,447 (GRCm39) probably benign Het
Gm9195 A C 14: 72,711,154 (GRCm39) L428R probably damaging Het
Grin2b A G 6: 135,756,255 (GRCm39) I490T possibly damaging Het
Kif24 T C 4: 41,400,442 (GRCm39) T499A probably benign Het
Mbtps1 G A 8: 120,260,108 (GRCm39) T413I probably damaging Het
Med4 A T 14: 73,751,365 (GRCm39) S105C probably benign Het
Mgat1 G A 11: 49,151,910 (GRCm39) R131Q probably damaging Het
Mroh4 T C 15: 74,477,961 (GRCm39) *984W probably null Het
Mybpc1 T C 10: 88,379,615 (GRCm39) E628G possibly damaging Het
Myh8 C T 11: 67,183,260 (GRCm39) P713L possibly damaging Het
Myo7a T C 7: 97,732,369 (GRCm39) D706G probably benign Het
Nbas T A 12: 13,424,751 (GRCm39) C997S possibly damaging Het
Nkx2-1 C A 12: 56,581,752 (GRCm39) G32C probably damaging Het
Npas3 A G 12: 54,112,653 (GRCm39) T466A probably benign Het
Opa1 C T 16: 29,439,232 (GRCm39) R683C probably benign Het
Opa3 C T 7: 18,989,466 (GRCm39) R110C probably damaging Het
Or5p63 T C 7: 107,811,169 (GRCm39) E189G probably benign Het
Or8k38 T A 2: 86,487,879 (GRCm39) I308L probably benign Het
Ppfibp2 T A 7: 107,337,525 (GRCm39) L609* probably null Het
Pygo2 T A 3: 89,340,617 (GRCm39) D338E possibly damaging Het
Pzp A T 6: 128,502,172 (GRCm39) M59K probably benign Het
Reln A G 5: 22,155,815 (GRCm39) probably null Het
Ripor1 A G 8: 106,347,833 (GRCm39) D1097G unknown Het
Rmdn3 T C 2: 118,968,863 (GRCm39) K443E probably benign Het
Rnf145 A G 11: 44,448,262 (GRCm39) D373G possibly damaging Het
Sec23b A T 2: 144,401,179 (GRCm39) E13D probably benign Het
Semp2l1 G T 1: 32,585,165 (GRCm39) H248Q probably benign Het
Slc39a6 A G 18: 24,715,399 (GRCm39) F707S probably damaging Het
Sox11 G A 12: 27,391,536 (GRCm39) A291V possibly damaging Het
Spart T A 3: 55,032,267 (GRCm39) V367D possibly damaging Het
Spata31e3 A G 13: 50,401,417 (GRCm39) F303S probably benign Het
Strap A T 6: 137,718,365 (GRCm39) K156N probably benign Het
Stxbp5 T A 10: 9,645,152 (GRCm39) I951F possibly damaging Het
Taar7a T C 10: 23,868,677 (GRCm39) I235V probably benign Het
Tek T A 4: 94,692,583 (GRCm39) N230K probably benign Het
Tyw1 T A 5: 130,325,520 (GRCm39) C469* probably null Het
Vcan T C 13: 89,828,050 (GRCm39) H3132R probably damaging Het
Vmn2r24 A G 6: 123,783,432 (GRCm39) D544G probably damaging Het
Vps33a T C 5: 123,674,604 (GRCm39) T388A probably benign Het
Vta1 A G 10: 14,551,743 (GRCm39) I152T probably damaging Het
Vtcn1 A G 3: 100,799,865 (GRCm39) D242G probably benign Het
Zfp12 T A 5: 143,231,220 (GRCm39) C548S probably damaging Het
Zfp263 A G 16: 3,567,323 (GRCm39) D546G probably benign Het
Zfp324 T A 7: 12,704,689 (GRCm39) C293S probably damaging Het
Zfp747l1 T C 7: 126,984,626 (GRCm39) K159E probably benign Het
Zscan4c A T 7: 10,743,819 (GRCm39) I473F possibly damaging Het
Other mutations in Vmn2r3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01019:Vmn2r3 APN 3 64,167,304 (GRCm39) missense probably damaging 1.00
IGL01468:Vmn2r3 APN 3 64,182,382 (GRCm39) missense possibly damaging 0.57
IGL02032:Vmn2r3 APN 3 64,182,476 (GRCm39) missense possibly damaging 0.95
IGL02405:Vmn2r3 APN 3 64,178,620 (GRCm39) splice site probably benign
IGL02640:Vmn2r3 APN 3 64,194,816 (GRCm39) missense probably benign
IGL02719:Vmn2r3 APN 3 64,183,031 (GRCm39) missense probably damaging 1.00
IGL02746:Vmn2r3 APN 3 64,167,239 (GRCm39) missense possibly damaging 0.74
IGL02952:Vmn2r3 APN 3 64,186,256 (GRCm39) missense probably damaging 1.00
IGL03390:Vmn2r3 APN 3 64,182,767 (GRCm39) missense possibly damaging 0.55
G1citation:Vmn2r3 UTSW 3 64,194,876 (GRCm39) missense probably benign 0.30
R0023:Vmn2r3 UTSW 3 64,182,787 (GRCm39) missense probably damaging 0.99
R0433:Vmn2r3 UTSW 3 64,183,054 (GRCm39) missense possibly damaging 0.51
R0647:Vmn2r3 UTSW 3 64,183,046 (GRCm39) missense probably damaging 1.00
R1071:Vmn2r3 UTSW 3 64,182,697 (GRCm39) missense possibly damaging 0.79
R1536:Vmn2r3 UTSW 3 64,182,538 (GRCm39) missense probably damaging 1.00
R1806:Vmn2r3 UTSW 3 64,194,810 (GRCm39) missense possibly damaging 0.73
R1806:Vmn2r3 UTSW 3 64,182,893 (GRCm39) missense probably benign 0.03
R1852:Vmn2r3 UTSW 3 64,166,815 (GRCm39) missense probably damaging 1.00
R1868:Vmn2r3 UTSW 3 64,166,537 (GRCm39) missense probably damaging 1.00
R2072:Vmn2r3 UTSW 3 64,182,493 (GRCm39) missense possibly damaging 0.87
R2240:Vmn2r3 UTSW 3 64,166,483 (GRCm39) missense probably benign 0.44
R2446:Vmn2r3 UTSW 3 64,182,733 (GRCm39) missense probably damaging 0.98
R4133:Vmn2r3 UTSW 3 64,183,138 (GRCm39) missense probably damaging 0.99
R4159:Vmn2r3 UTSW 3 64,194,850 (GRCm39) nonsense probably null
R4494:Vmn2r3 UTSW 3 64,182,692 (GRCm39) missense probably damaging 1.00
R4860:Vmn2r3 UTSW 3 64,183,022 (GRCm39) missense probably benign 0.00
R4895:Vmn2r3 UTSW 3 64,167,182 (GRCm39) missense probably benign 0.00
R4912:Vmn2r3 UTSW 3 64,166,618 (GRCm39) missense probably damaging 1.00
R5018:Vmn2r3 UTSW 3 64,178,774 (GRCm39) missense probably benign
R5033:Vmn2r3 UTSW 3 64,167,220 (GRCm39) missense probably benign 0.09
R5126:Vmn2r3 UTSW 3 64,166,740 (GRCm39) missense probably damaging 1.00
R5148:Vmn2r3 UTSW 3 64,186,247 (GRCm39) missense probably damaging 1.00
R5414:Vmn2r3 UTSW 3 64,166,978 (GRCm39) nonsense probably null
R5785:Vmn2r3 UTSW 3 64,166,444 (GRCm39) missense possibly damaging 0.89
R5905:Vmn2r3 UTSW 3 64,182,698 (GRCm39) missense probably benign 0.19
R5992:Vmn2r3 UTSW 3 64,167,068 (GRCm39) missense probably damaging 1.00
R6028:Vmn2r3 UTSW 3 64,182,698 (GRCm39) missense probably benign 0.19
R6331:Vmn2r3 UTSW 3 64,186,182 (GRCm39) missense probably damaging 1.00
R6378:Vmn2r3 UTSW 3 64,182,517 (GRCm39) missense probably damaging 1.00
R6775:Vmn2r3 UTSW 3 64,183,039 (GRCm39) missense possibly damaging 0.88
R6822:Vmn2r3 UTSW 3 64,194,876 (GRCm39) missense probably benign 0.30
R6826:Vmn2r3 UTSW 3 64,182,327 (GRCm39) nonsense probably null
R6886:Vmn2r3 UTSW 3 64,166,927 (GRCm39) missense probably damaging 1.00
R6971:Vmn2r3 UTSW 3 64,166,668 (GRCm39) missense probably damaging 0.99
R7154:Vmn2r3 UTSW 3 64,194,732 (GRCm39) missense probably benign 0.02
R7192:Vmn2r3 UTSW 3 64,167,364 (GRCm39) missense probably benign 0.24
R7282:Vmn2r3 UTSW 3 64,168,825 (GRCm39) missense possibly damaging 0.90
R7472:Vmn2r3 UTSW 3 64,182,953 (GRCm39) missense probably benign 0.00
R7563:Vmn2r3 UTSW 3 64,182,770 (GRCm39) missense possibly damaging 0.60
R7726:Vmn2r3 UTSW 3 64,182,939 (GRCm39) nonsense probably null
R7966:Vmn2r3 UTSW 3 64,186,235 (GRCm39) missense probably damaging 0.99
R8025:Vmn2r3 UTSW 3 64,182,871 (GRCm39) missense possibly damaging 0.91
R8050:Vmn2r3 UTSW 3 64,178,714 (GRCm39) missense probably damaging 0.99
R8300:Vmn2r3 UTSW 3 64,182,347 (GRCm39) missense probably benign 0.00
R8402:Vmn2r3 UTSW 3 64,178,617 (GRCm39) splice site probably benign
R8486:Vmn2r3 UTSW 3 64,186,370 (GRCm39) missense probably damaging 1.00
R8523:Vmn2r3 UTSW 3 64,182,311 (GRCm39) missense probably benign 0.03
R8678:Vmn2r3 UTSW 3 64,166,896 (GRCm39) missense possibly damaging 0.76
R8885:Vmn2r3 UTSW 3 64,182,383 (GRCm39) missense probably benign 0.00
R8886:Vmn2r3 UTSW 3 64,194,892 (GRCm39) missense possibly damaging 0.47
R8905:Vmn2r3 UTSW 3 64,166,695 (GRCm39) missense probably damaging 0.99
R8937:Vmn2r3 UTSW 3 64,166,673 (GRCm39) missense probably damaging 1.00
R8955:Vmn2r3 UTSW 3 64,168,803 (GRCm39) missense possibly damaging 0.56
R9485:Vmn2r3 UTSW 3 64,183,046 (GRCm39) missense probably damaging 1.00
R9575:Vmn2r3 UTSW 3 64,178,735 (GRCm39) missense probably benign 0.01
R9618:Vmn2r3 UTSW 3 64,178,724 (GRCm39) missense probably damaging 0.98
X0022:Vmn2r3 UTSW 3 64,182,389 (GRCm39) missense probably damaging 1.00
X0022:Vmn2r3 UTSW 3 64,178,669 (GRCm39) missense possibly damaging 0.62
Predicted Primers PCR Primer
(F):5'- AGTGACATAGTTGATCCTCCTGCTC -3'
(R):5'- CCAAATGTAGTAGCATAAAACTGAGGC -3'

Sequencing Primer
(F):5'- CTCCTGCTCCAATAATTCCAATTAG -3'
(R):5'- AAAACTGAGGCACCTGTTGTTCC -3'
Posted On 2022-02-07