Mutagenetix > Incidental Mutation

Incidental Mutation 'R9183:Safb2'

697217

Institutional Source

Beutler Lab

Gene Symbol

Safb2

Ensembl Gene

ENSMUSG00000042625

Gene Name

scaffold attachment factor B2

Synonyms

MMRRC Submission

068950-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.604) question?

Stock #

R9183 (G1)

Quality Score

217.468

Status

Not validated

Chromosome

Chromosomal Location

56867965-56891585 bp(-) (GRCm39)

Type of Mutation

utr 3 prime

DNA Base Change (assembly)

ACTTCTTCT to ACTTCT at 56878292 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000116363 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000075510] [ENSMUST00000131056] [ENSMUST00000133604] [ENSMUST00000142940] [ENSMUST00000144255] [ENSMUST00000154991] [ENSMUST00000155983]

AlphaFold

Q80YR5

Predicted Effect

probably benign
Transcript: ENSMUST00000075510

SMART Domains

Protein: ENSMUSP00000074953
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
SAP	25	59	8.21e-11	SMART
low complexity region	91	104	N/A	INTRINSIC
low complexity region	162	173	N/A	INTRINSIC
coiled coil region	262	285	N/A	INTRINSIC
low complexity region	286	294	N/A	INTRINSIC
low complexity region	318	335	N/A	INTRINSIC
RRM	452	525	1.33e-19	SMART
low complexity region	557	578	N/A	INTRINSIC
low complexity region	631	645	N/A	INTRINSIC
coiled coil region	658	772	N/A	INTRINSIC
low complexity region	798	815	N/A	INTRINSIC
low complexity region	920	944	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000131056

SMART Domains

Protein: ENSMUSP00000120750
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
low complexity region	44	65	N/A	INTRINSIC
low complexity region	118	133	N/A	INTRINSIC
coiled coil region	146	260	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000133604

SMART Domains

Protein: ENSMUSP00000119324
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
SAP	25	59	8.21e-11	SMART
low complexity region	91	104	N/A	INTRINSIC
low complexity region	162	173	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000142940

SMART Domains

Protein: ENSMUSP00000123229
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
coiled coil region	22	136	N/A	INTRINSIC
low complexity region	162	179	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000144255

SMART Domains

Protein: ENSMUSP00000123673
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
SAP	25	59	8.21e-11	SMART
low complexity region	91	104	N/A	INTRINSIC
low complexity region	162	173	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000154991

SMART Domains

Protein: ENSMUSP00000117696
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
coiled coil region	23	137	N/A	INTRINSIC
low complexity region	163	180	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000155983

SMART Domains

Protein: ENSMUSP00000116363
Gene: ENSMUSG00000042625

Domain	Start	End	E-Value	Type
SAP	25	59	8.21e-11	SMART
low complexity region	91	104	N/A	INTRINSIC
low complexity region	162	173	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene, along with its paralog (scaffold attachment factor B1), is a repressor of estrogen receptor alpha. The encoded protein binds scaffold/matrix attachment region (S/MAR) DNA and is involved in cell cycle regulation, apoptosis, differentiation, the stress response, and regulation of immune genes. [provided by RefSeq, May 2016]
PHENOTYPE: Male homozyous mutant mice exhibit an increase in testis weight and an increased number of Sertoli cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acox2	A	G	14: 8,251,559 (GRCm38)	C313R	probably damaging	Het
Adap2	A	G	11: 80,045,882 (GRCm39)	N54S	probably damaging	Het
Adcy8	T	C	15: 64,694,116 (GRCm39)	D387G	probably damaging	Het
Adgra1	G	A	7: 139,455,716 (GRCm39)	R448Q	probably benign	Het
Antxr1	A	T	6: 87,264,025 (GRCm39)	D148E	probably damaging	Het
Ap3d1	A	T	10: 80,545,627 (GRCm39)	V1034E	probably null	Het
Arpp21	C	T	9: 111,895,066 (GRCm39)	A731T	probably benign	Het
Asl	T	A	5: 130,042,312 (GRCm39)	R255W	probably damaging	Het
Asxl1	T	A	2: 153,239,840 (GRCm39)	S544T	probably damaging	Het
Atp8a1	A	C	5: 67,924,378 (GRCm39)	Y329D		Het
Calcr	A	T	6: 3,711,463 (GRCm39)	I186N	probably damaging	Het
Cdh18	T	C	15: 23,227,065 (GRCm39)		probably null	Het
Celsr3	T	C	9: 108,706,595 (GRCm39)	L1026P	probably damaging	Het
Ces2a	T	A	8: 105,460,774 (GRCm39)	V24E	possibly damaging	Het
Clybl	T	C	14: 122,639,387 (GRCm39)	I317T	probably damaging	Het
Col13a1	T	A	10: 61,699,758 (GRCm39)	T476S	unknown	Het
Cyp4f15	T	C	17: 32,919,205 (GRCm39)	S343P	probably damaging	Het
D630003M21Rik	T	C	2: 158,059,112 (GRCm39)	T263A	probably benign	Het
Fbxo28	A	G	1: 182,157,526 (GRCm39)	V97A	possibly damaging	Het
Frem2	C	T	3: 53,427,486 (GRCm39)	V2889I	probably damaging	Het
Garnl3	T	C	2: 32,895,080 (GRCm39)	E663G	probably damaging	Het
Gen1	T	A	12: 11,299,186 (GRCm39)	K338M	probably damaging	Het
Gfi1	A	G	5: 107,873,819 (GRCm39)		probably null	Het
Gfod2	A	G	8: 106,449,653 (GRCm39)	S95P	probably benign	Het
H2-T13	T	A	17: 36,392,382 (GRCm39)	H31L	unknown	Het
Heatr1	A	G	13: 12,436,266 (GRCm39)	Q1224R	probably damaging	Het
Hectd4	A	G	5: 121,437,551 (GRCm39)	K1059E	possibly damaging	Het
Hmgcs2	C	T	3: 98,198,232 (GRCm39)	A45V	possibly damaging	Het
Hnmt	C	A	2: 23,893,655 (GRCm39)	V280L	probably benign	Het
Ifi35	G	T	11: 101,348,091 (GRCm39)	V66L	probably benign	Het
Kcnn2	T	C	18: 45,694,379 (GRCm39)	I188T	probably damaging	Het
Klhl8	C	A	5: 104,012,111 (GRCm39)	A575S	probably benign	Het
Krt6a	T	C	15: 101,601,446 (GRCm39)	D225G	probably benign	Het
Lrtm2	T	C	6: 119,294,384 (GRCm39)	Y249C	probably damaging	Het
Med12l	C	T	3: 58,984,498 (GRCm39)	R479C	probably damaging	Het
Muc5ac	A	T	7: 141,352,637 (GRCm39)	Y709F	possibly damaging	Het
Nsd2	G	A	5: 34,028,796 (GRCm39)	A162T	probably damaging	Het
Or6c38	A	G	10: 128,929,201 (GRCm39)	M214T	probably benign	Het
Phaf1	C	A	8: 105,957,840 (GRCm39)	Q49K	probably benign	Het
Polr2h	T	C	16: 20,539,285 (GRCm39)	Y90H	possibly damaging	Het
Prkaa1	A	T	15: 5,205,969 (GRCm39)	E275V	probably damaging	Het
Prss22	C	T	17: 24,213,592 (GRCm39)	G233E	probably damaging	Het
Rhcg	A	T	7: 79,244,564 (GRCm39)	L496*	probably null	Het
Rnf213	A	G	11: 119,318,448 (GRCm39)	E1084G		Het
Slc14a1	T	A	18: 78,154,598 (GRCm39)	I263F	probably benign	Het
Slc40a1	C	T	1: 45,948,671 (GRCm39)	M536I	possibly damaging	Het
Slco6c1	T	A	1: 96,996,775 (GRCm39)		probably null	Het
Stk32a	T	C	18: 43,394,405 (GRCm39)	F118S	probably damaging	Het
Sytl1	G	T	4: 132,980,934 (GRCm39)	R467S	possibly damaging	Het
Thbs2	T	C	17: 14,896,526 (GRCm39)	I788V	probably benign	Het
Tmed6	T	A	8: 107,788,390 (GRCm39)	R186*	probably null	Het
Trnau1ap	G	A	4: 132,052,565 (GRCm39)	R78C	probably damaging	Het
Trpv1	A	T	11: 73,135,039 (GRCm39)	D412V	possibly damaging	Het
Ttc16	C	T	2: 32,647,329 (GRCm39)	V688M	probably benign	Het
Ubr5	C	A	15: 37,997,420 (GRCm39)	L1738F		Het
Vmn2r89	A	G	14: 51,692,501 (GRCm39)	I101M	probably benign	Het
Wdr27	C	T	17: 15,148,651 (GRCm39)	R114Q	possibly damaging	Het
Wdr48	A	G	9: 119,749,730 (GRCm39)	H563R	possibly damaging	Het
Wdr49	A	C	3: 75,205,419 (GRCm39)	S666A	probably benign	Het
Wwox	T	C	8: 115,433,110 (GRCm39)	S259P	probably damaging	Het
Zfp160	T	A	17: 21,240,354 (GRCm39)	D12E	possibly damaging	Het
Zfp800	A	G	6: 28,243,172 (GRCm39)	Y598H	probably benign	Het
Zfp970	T	C	2: 177,167,536 (GRCm39)	L370P	probably damaging	Het
Zmat5	A	T	11: 4,672,431 (GRCm39)	D16V	probably damaging	Het

Other mutations in Safb2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00825:Safb2	APN	17	56,878,208 (GRCm39)	critical splice donor site	probably null
IGL00954:Safb2	APN	17	56,885,639 (GRCm39)	critical splice donor site	probably null
IGL01085:Safb2	APN	17	56,872,242 (GRCm39)	nonsense	probably null
IGL03073:Safb2	APN	17	56,878,289 (GRCm39)	missense	probably benign	0.06
R0748:Safb2	UTSW	17	56,882,580 (GRCm39)	missense	probably benign	0.30
R1297:Safb2	UTSW	17	56,891,265 (GRCm39)	unclassified	probably benign
R1876:Safb2	UTSW	17	56,883,909 (GRCm39)	splice site	probably null
R2921:Safb2	UTSW	17	56,875,906 (GRCm39)	missense	possibly damaging	0.46
R3966:Safb2	UTSW	17	56,882,356 (GRCm39)	missense	probably null	1.00
R5140:Safb2	UTSW	17	56,884,901 (GRCm39)	missense	probably benign	0.01
R5484:Safb2	UTSW	17	56,882,346 (GRCm39)	intron	probably benign
R5542:Safb2	UTSW	17	56,882,647 (GRCm39)	missense	probably damaging	0.97
R5602:Safb2	UTSW	17	56,882,630 (GRCm39)	missense	possibly damaging	0.65
R5801:Safb2	UTSW	17	56,870,103 (GRCm39)	missense	possibly damaging	0.96
R5864:Safb2	UTSW	17	56,873,491 (GRCm39)	unclassified	probably benign
R5985:Safb2	UTSW	17	56,870,181 (GRCm39)	missense	possibly damaging	0.72
R6060:Safb2	UTSW	17	56,870,246 (GRCm39)	splice site	probably null
R6279:Safb2	UTSW	17	56,870,226 (GRCm39)	missense	possibly damaging	0.53
R6300:Safb2	UTSW	17	56,870,226 (GRCm39)	missense	possibly damaging	0.53
R6411:Safb2	UTSW	17	56,878,289 (GRCm39)	missense	probably benign	0.06
R6555:Safb2	UTSW	17	56,889,982 (GRCm39)	critical splice donor site	probably null
R6555:Safb2	UTSW	17	56,874,600 (GRCm39)	missense	probably damaging	1.00
R7039:Safb2	UTSW	17	56,871,594 (GRCm39)	missense	possibly damaging	0.82
R7515:Safb2	UTSW	17	56,889,982 (GRCm39)	critical splice donor site	probably null
R7796:Safb2	UTSW	17	56,873,327 (GRCm39)	missense	possibly damaging	0.53
R8186:Safb2	UTSW	17	56,873,051 (GRCm39)	missense	possibly damaging	0.91
R8361:Safb2	UTSW	17	56,890,061 (GRCm39)	missense	probably damaging	0.99
R8918:Safb2	UTSW	17	56,882,975 (GRCm39)	nonsense	probably null
R8998:Safb2	UTSW	17	56,870,391 (GRCm39)	missense	possibly damaging	0.53
R9025:Safb2	UTSW	17	56,873,614 (GRCm39)	missense	probably damaging	0.99
R9176:Safb2	UTSW	17	56,878,292 (GRCm39)	utr 3 prime	probably benign
R9184:Safb2	UTSW	17	56,878,292 (GRCm39)	utr 3 prime	probably benign
R9213:Safb2	UTSW	17	56,882,602 (GRCm39)	missense	probably benign	0.01
R9522:Safb2	UTSW	17	56,873,900 (GRCm39)	missense	probably damaging	1.00
X0066:Safb2	UTSW	17	56,872,978 (GRCm39)	missense	probably benign	0.29
Z1186:Safb2	UTSW	17	56,870,246 (GRCm39)	splice site	probably null

Predicted Primers

PCR Primer
(F):5'- GCTAACAAGCTGTCTGGCTC -3'
(R):5'- ACAATGTCCACGTCAGATGAG -3'

Sequencing Primer
(F):5'- TAACAAGCTGTCTGGCTCTAGGC -3'
(R):5'- TGAGGCCACCAAATGCATTAG -3'

Posted On

2022-02-07