Mutagenetix > Incidental Mutation

Incidental Mutation 'R9187:Ndst1'

697483

Institutional Source

Beutler Lab

Gene Symbol

Ndst1

Ensembl Gene

ENSMUSG00000054008

Gene Name

N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1

Synonyms

Ndst-1, b2b2230Clo, 1200015G06Rik, Hsst, glucosaminyl N-deacetylase/N-sulfotransferase 1

MMRRC Submission

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R9187 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

60817566-60881722 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 60824268 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 803 (D803G)

Ref Sequence

ENSEMBL: ENSMUSP00000126623 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000169273]

AlphaFold

Q3UHN9

Predicted Effect

probably benign
Transcript: ENSMUST00000169273
AA Change: D803G

PolyPhen 2 Score 0.025 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000126623
Gene: ENSMUSG00000054008
AA Change: D803G

Domain	Start	End	E-Value	Type
low complexity region	3	12	N/A	INTRINSIC
Pfam:HSNSD	25	515	5.1e-254	PFAM
Pfam:Sulfotransfer_1	604	869	2.2e-48	PFAM

Meta Mutation Damage Score

0.1466

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.5%

Validation Efficiency

97% (70/72)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the heparan sulfate/heparin GlcNAc N-deacetylase/ N-sulfotransferase family. The encoded enzyme is a type II transmembrane protein that resides in the Golgi apparatus. The encoded protein catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate to nitrogen of glucosamine in heparan sulfate. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]
PHENOTYPE: Mice homozygous for disruptions in this gene die late in gestation or neonatally. Lungs fail to inflate and mice born alive experience respiratory distress and failure. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca5	A	G	11: 110,200,961 (GRCm39)		probably null	Het
Abcb1a	T	A	5: 8,765,016 (GRCm39)	C669S	probably benign	Het
Abcc3	A	G	11: 94,255,913 (GRCm39)	L524P	probably damaging	Het
Akap5	A	T	12: 76,376,745 (GRCm39)	K726*	probably null	Het
Aldh16a1	T	C	7: 44,791,441 (GRCm39)	E778G	probably damaging	Het
Ankle2	G	A	5: 110,400,610 (GRCm39)	V649M	possibly damaging	Het
Apon	A	G	10: 128,090,832 (GRCm39)	N170S	probably benign	Het
Baiap2l1	T	C	5: 144,217,764 (GRCm39)	Y274C	probably benign	Het
Bub1	A	T	2: 127,656,856 (GRCm39)	N425K	possibly damaging	Het
Camsap1	A	G	2: 25,820,028 (GRCm39)	C1487R	probably damaging	Het
Cd4	A	C	6: 124,844,651 (GRCm39)	V378G	probably damaging	Het
Cenpa	C	A	5: 30,824,380 (GRCm39)	P3Q	unknown	Het
Cfap44	T	C	16: 44,225,144 (GRCm39)		probably benign	Het
Cfap65	T	A	1: 74,956,517 (GRCm39)	M1021L	probably benign	Het
Ddx39a	G	T	8: 84,449,113 (GRCm39)	M300I	probably benign	Het
Dgkh	T	C	14: 78,832,601 (GRCm39)	R819G	probably damaging	Het
Dlc1	A	T	8: 37,405,786 (GRCm39)	M1K	probably null	Het
Dnah9	A	G	11: 65,895,972 (GRCm39)	W2468R	probably benign	Het
Ebag9	A	T	15: 44,503,706 (GRCm39)	K177I	probably damaging	Het
Ehbp1	T	C	11: 22,101,184 (GRCm39)	I249V	probably damaging	Het
Fam171b	T	C	2: 83,710,365 (GRCm39)	V679A	probably damaging	Het
Gabbr2	G	A	4: 46,674,533 (GRCm39)	T818I	probably damaging	Het
Gcn1	T	C	5: 115,752,177 (GRCm39)	S2098P	probably damaging	Het
Glb1	T	C	9: 114,302,991 (GRCm39)	I609T	probably damaging	Het
Gm5916	T	G	9: 36,032,020 (GRCm39)	H88P	probably benign	Het
Gon4l	T	C	3: 88,786,618 (GRCm39)	S586P	probably benign	Het
Gzmg	T	A	14: 56,394,714 (GRCm39)	T185S	probably benign	Het
Hipk3	T	A	2: 104,276,936 (GRCm39)	D381V	probably damaging	Het
Hnrnpul2	C	A	19: 8,808,319 (GRCm39)	N681K	probably benign	Het
Hpdl	C	A	4: 116,678,372 (GRCm39)	G30C	probably damaging	Het
Iws1	G	A	18: 32,213,213 (GRCm39)	E214K	possibly damaging	Het
Krt82	C	A	15: 101,450,260 (GRCm39)	V479L	probably benign	Het
Lama4	G	A	10: 38,924,124 (GRCm39)		probably null	Het
Lamc1	C	A	1: 153,097,434 (GRCm39)	E1537*	probably null	Het
Mab21l3	G	A	3: 101,730,594 (GRCm39)	T215M	probably benign	Het
Magi3	C	A	3: 103,923,073 (GRCm39)	V1215F	possibly damaging	Het
Mical2	T	A	7: 111,902,797 (GRCm39)	C89*	probably null	Het
Mitf	T	A	6: 97,994,835 (GRCm39)	V427D	probably benign	Het
Muc4	T	C	16: 32,589,102 (GRCm39)	V753A		Het
Myo16	G	A	8: 10,492,233 (GRCm39)	R725H	unknown	Het
Ncapg2	T	A	12: 116,402,287 (GRCm39)	D706E	probably damaging	Het
Neb	A	T	2: 52,096,115 (GRCm39)	V5065D	probably damaging	Het
Npm3	G	A	19: 45,737,941 (GRCm39)	R19*	probably null	Het
Ntrk3	A	C	7: 77,896,966 (GRCm39)	N690K	possibly damaging	Het
Or7g32	T	C	9: 19,389,166 (GRCm39)	I127V	probably benign	Het
Or7g35	T	C	9: 19,495,950 (GRCm39)	I39T	probably benign	Het
Or8d4	C	A	9: 40,038,886 (GRCm39)	V124L	possibly damaging	Het
P3h2	G	A	16: 25,924,186 (GRCm39)	A83V	probably benign	Het
Pdia2	A	G	17: 26,415,910 (GRCm39)	S362P	probably damaging	Het
Pmp22	C	T	11: 63,025,268 (GRCm39)	H34Y	probably benign	Het
Pmp22	T	C	11: 63,025,317 (GRCm39)	V50A	probably benign	Het
Ppfia4	T	C	1: 134,255,006 (GRCm39)	D283G	probably damaging	Het
Pramel58	T	C	5: 94,831,755 (GRCm39)	V254A	probably benign	Het
Prss55	T	A	14: 64,314,531 (GRCm39)	Q213L	probably null	Het
Rgsl1	C	T	1: 153,669,613 (GRCm39)	E258K	possibly damaging	Het
Ripor2	T	C	13: 24,897,632 (GRCm39)	F777L	probably benign	Het
Rsf1	GGC	GGCGGCGGCCGC	7: 97,229,140 (GRCm39)		probably benign	Het
Sgce	G	A	6: 4,711,362 (GRCm39)	R173C	probably benign	Het
Sncaip	T	G	18: 53,040,011 (GRCm39)	M735R	probably benign	Het
Snrpd2	T	A	7: 18,886,505 (GRCm39)	I96N	probably damaging	Het
Spryd3	T	G	15: 102,039,110 (GRCm39)	D121A	probably damaging	Het
Srsf3-ps	A	G	11: 98,516,187 (GRCm39)	V62A	possibly damaging	Het
Sspo	T	C	6: 48,472,223 (GRCm39)	C149R	probably damaging	Het
Tbc1d10b	A	T	7: 126,807,105 (GRCm39)	M144K	probably benign	Het
Tbc1d31	T	A	15: 57,779,485 (GRCm39)	I66N	probably damaging	Het
Tssk1	A	G	16: 17,712,457 (GRCm39)	T81A	possibly damaging	Het
Ttc28	A	G	5: 111,249,902 (GRCm39)	Y284C	probably damaging	Het
Ttn	T	C	2: 76,573,755 (GRCm39)	T25713A	probably benign	Het
Vmn2r125	T	C	4: 156,703,554 (GRCm39)	W311R	probably damaging	Het
Vmn2r80	A	T	10: 79,030,438 (GRCm39)	T755S	probably benign	Het
Vmn2r98	T	C	17: 19,301,481 (GRCm39)	C828R	probably damaging	Het
Wwox	T	C	8: 115,438,978 (GRCm39)	F348S	probably damaging	Het
Zeb2	T	A	2: 45,000,040 (GRCm39)	R65W	possibly damaging	Het
Zfp712	T	A	13: 67,188,637 (GRCm39)	H630L	probably damaging	Het
Zfp764	G	T	7: 127,004,608 (GRCm39)	H174Q	probably damaging	Het

Other mutations in Ndst1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00336:Ndst1	APN	18	60,841,028 (GRCm39)	missense	probably damaging	1.00
IGL01410:Ndst1	APN	18	60,833,517 (GRCm39)	missense	probably damaging	1.00
IGL01578:Ndst1	APN	18	60,846,198 (GRCm39)	missense	probably damaging	1.00
IGL02133:Ndst1	APN	18	60,832,618 (GRCm39)	missense	probably benign	0.05
IGL03200:Ndst1	APN	18	60,832,611 (GRCm39)	missense	possibly damaging	0.86
R0631:Ndst1	UTSW	18	60,833,431 (GRCm39)	splice site	probably benign
R0899:Ndst1	UTSW	18	60,840,954 (GRCm39)	missense	probably benign	0.00
R1104:Ndst1	UTSW	18	60,830,218 (GRCm39)	missense	probably damaging	0.98
R1371:Ndst1	UTSW	18	60,840,719 (GRCm39)	missense	possibly damaging	0.90
R1456:Ndst1	UTSW	18	60,846,277 (GRCm39)	missense	possibly damaging	0.73
R1511:Ndst1	UTSW	18	60,830,242 (GRCm39)	missense	possibly damaging	0.61
R1524:Ndst1	UTSW	18	60,831,576 (GRCm39)	missense	probably damaging	0.99
R1699:Ndst1	UTSW	18	60,828,580 (GRCm39)	missense	probably damaging	1.00
R1718:Ndst1	UTSW	18	60,840,875 (GRCm39)	missense	probably damaging	0.99
R1772:Ndst1	UTSW	18	60,835,909 (GRCm39)	missense	probably damaging	0.99
R1900:Ndst1	UTSW	18	60,845,793 (GRCm39)	critical splice donor site	probably null
R2079:Ndst1	UTSW	18	60,828,581 (GRCm39)	missense	probably damaging	1.00
R2105:Ndst1	UTSW	18	60,824,325 (GRCm39)	missense	probably benign	0.01
R2127:Ndst1	UTSW	18	60,824,280 (GRCm39)	missense	probably benign	0.00
R2875:Ndst1	UTSW	18	60,823,119 (GRCm39)	missense	probably damaging	1.00
R3798:Ndst1	UTSW	18	60,846,238 (GRCm39)	missense	possibly damaging	0.94
R3950:Ndst1	UTSW	18	60,830,211 (GRCm39)	missense	probably benign	0.12
R3951:Ndst1	UTSW	18	60,830,211 (GRCm39)	missense	probably benign	0.12
R3952:Ndst1	UTSW	18	60,830,211 (GRCm39)	missense	probably benign	0.12
R4868:Ndst1	UTSW	18	60,828,548 (GRCm39)	missense	probably benign	0.07
R4898:Ndst1	UTSW	18	60,825,059 (GRCm39)	missense	probably benign	0.12
R4988:Ndst1	UTSW	18	60,836,005 (GRCm39)	missense	probably damaging	0.99
R5271:Ndst1	UTSW	18	60,838,204 (GRCm39)	missense	probably benign	0.03
R5337:Ndst1	UTSW	18	60,823,079 (GRCm39)	missense	probably damaging	1.00
R5467:Ndst1	UTSW	18	60,825,093 (GRCm39)	missense	probably benign
R5830:Ndst1	UTSW	18	60,836,910 (GRCm39)	missense	probably damaging	1.00
R5968:Ndst1	UTSW	18	60,846,148 (GRCm39)	missense	probably benign
R6241:Ndst1	UTSW	18	60,836,901 (GRCm39)	missense	probably damaging	0.99
R6422:Ndst1	UTSW	18	60,836,025 (GRCm39)	missense	probably benign	0.44
R7099:Ndst1	UTSW	18	60,828,572 (GRCm39)	missense	possibly damaging	0.88
R7544:Ndst1	UTSW	18	60,830,256 (GRCm39)	missense	probably damaging	1.00
R8918:Ndst1	UTSW	18	60,825,083 (GRCm39)	missense	probably benign	0.00
R8951:Ndst1	UTSW	18	60,830,196 (GRCm39)	missense	probably benign
R9374:Ndst1	UTSW	18	60,845,931 (GRCm39)	missense	probably damaging	0.97
R9526:Ndst1	UTSW	18	60,838,220 (GRCm39)	nonsense	probably null
R9552:Ndst1	UTSW	18	60,845,931 (GRCm39)	missense	probably damaging	0.97
R9651:Ndst1	UTSW	18	60,833,539 (GRCm39)	missense	probably damaging	0.96
V8831:Ndst1	UTSW	18	60,835,999 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGCCAAAGCTTTACTTCCATG -3'
(R):5'- TTACAGCCAGGCTATTCTTGC -3'

Sequencing Primer
(F):5'- CCAAAGCTTTACTTCCATGGCTGAAG -3'
(R):5'- GCCAGGCTATTCTTGCTGCAG -3'

Posted On

2022-02-07