Mutagenetix > Incidental Mutation

Incidental Mutation 'R9193:Amy1'

697792

Institutional Source

Beutler Lab

Gene Symbol

Amy1

Ensembl Gene

ENSMUSG00000074264

Gene Name

amylase 1, salivary

Synonyms

Amy-1

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.126) question?

Stock #

R9193 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

113349601-113371399 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 113356278 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 293 (K293E)

Ref Sequence

ENSEMBL: ENSMUSP00000070368 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067980] [ENSMUST00000106540] [ENSMUST00000142505] [ENSMUST00000174147]

AlphaFold

P00687

Predicted Effect

probably benign
Transcript: ENSMUST00000067980
AA Change: K293E

PolyPhen 2 Score 0.224 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000070368
Gene: ENSMUSG00000074264
AA Change: K293E

Domain	Start	End	E-Value	Type
Aamy	26	413	6.31e-97	SMART
Aamy_C	422	510	4.02e-49	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000106540
AA Change: K293E

PolyPhen 2 Score 0.224 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000102150
Gene: ENSMUSG00000074264
AA Change: K293E

Domain	Start	End	E-Value	Type
Aamy	26	413	6.31e-97	SMART
Aamy_C	422	510	4.02e-49	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000142505

SMART Domains

Protein: ENSMUSP00000120493
Gene: ENSMUSG00000074264

Domain	Start	End	E-Value	Type
Pfam:Alpha-amylase	36	271	1.4e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000174147

SMART Domains

Protein: ENSMUSP00000133875
Gene: ENSMUSG00000074264

Domain	Start	End	E-Value	Type
Pfam:Alpha-amylase	35	129	2e-10	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

100% (61/61)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the alpha-amylase family of proteins. Amylases are secreted proteins that hydrolyze 1,4-alpha-glucoside bonds in oligosaccharides and polysaccharides, catalyzing the first step in digestion of dietary starch and glycogen. This gene and several family members are present in a gene cluster on chromosome 1. This gene encodes an amylase isoenzyme produced by the pancreas. [provided by RefSeq, Jan 2015]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ak1	A	T	2: 32,520,391 (GRCm39)	K79M	probably benign	Het
Bcl2l10	A	G	9: 75,255,333 (GRCm39)	Q50R	probably benign	Het
Bpifa6	G	A	2: 153,826,740 (GRCm39)	G35D	probably benign	Het
Cachd1	C	A	4: 100,634,339 (GRCm39)	P5Q	unknown	Het
Capn13	A	T	17: 73,652,191 (GRCm39)	I266N	probably damaging	Het
Chil3	A	G	3: 106,063,081 (GRCm39)	S170P	possibly damaging	Het
Ckap4	A	G	10: 84,363,350 (GRCm39)	I571T	probably damaging	Het
Col14a1	A	G	15: 55,242,964 (GRCm39)	M371V	unknown	Het
Dag1	A	G	9: 108,085,467 (GRCm39)	L558P	possibly damaging	Het
Edem3	G	A	1: 151,694,270 (GRCm39)	E868K	probably benign	Het
Eif3k	T	C	7: 28,673,624 (GRCm39)	Y150C	probably damaging	Het
Farp1	T	C	14: 121,518,281 (GRCm39)	I988T	probably benign	Het
Fat3	A	G	9: 15,910,248 (GRCm39)	M1918T	probably benign	Het
Gba2	A	G	4: 43,578,112 (GRCm39)	I79T	probably benign	Het
Gbp8	T	C	5: 105,179,169 (GRCm39)	D110G	probably damaging	Het
Gm57858	G	T	3: 36,089,428 (GRCm39)	N165K	probably benign	Het
H2-M2	T	A	17: 37,793,428 (GRCm39)	M193L	probably benign	Het
H2-T13	A	G	17: 36,391,956 (GRCm39)	V39A	possibly damaging	Het
Ighv7-1	T	A	12: 113,860,110 (GRCm39)	D94V	probably damaging	Het
Il2ra	T	C	2: 11,689,202 (GRCm39)	F244L	possibly damaging	Het
Jag1	A	T	2: 136,931,764 (GRCm39)	H602Q	probably null	Het
Kidins220	A	T	12: 25,036,966 (GRCm39)	I16F	possibly damaging	Het
Klb	A	G	5: 65,529,368 (GRCm39)	T299A	possibly damaging	Het
Lama4	A	G	10: 38,951,444 (GRCm39)	K1063R	probably benign	Het
Lrit2	A	G	14: 36,794,550 (GRCm39)	E538G	possibly damaging	Het
Lrrc7	A	T	3: 158,059,011 (GRCm39)	L32*	probably null	Het
Lrrtm3	A	T	10: 63,765,883 (GRCm39)	I568N	probably damaging	Het
Myom1	A	G	17: 71,343,295 (GRCm39)	D164G	probably damaging	Het
Naaladl2	T	C	3: 23,900,742 (GRCm39)	D696G	probably damaging	Het
Nalcn	A	T	14: 123,545,792 (GRCm39)	L1073*	probably null	Het
Nid2	T	C	14: 19,853,278 (GRCm39)	S1166P	probably damaging	Het
Nlrp4c	T	C	7: 6,095,621 (GRCm39)	V833A	probably benign	Het
Nyap2	T	C	1: 81,275,712 (GRCm39)	S619P	probably damaging	Het
Or10d5j	T	C	9: 39,867,878 (GRCm39)	M118V	probably damaging	Het
Or2a20	A	T	6: 43,194,086 (GRCm39)	T80S	probably benign	Het
Or4a71	A	G	2: 89,357,987 (GRCm39)	Y256H	probably damaging	Het
Or8k16	C	A	2: 85,520,644 (GRCm39)	Y290*	probably null	Het
P3h2	T	C	16: 25,923,991 (GRCm39)	N148S	probably benign	Het
P4htm	A	G	9: 108,460,081 (GRCm39)	M231T	probably damaging	Het
Pank1	T	A	19: 34,804,634 (GRCm39)	K349I	possibly damaging	Het
Pgam5	A	G	5: 110,413,466 (GRCm39)	Y210H	probably benign	Het
Prb1b	T	C	6: 132,288,996 (GRCm39)	H276R	unknown	Het
Prl2a1	T	A	13: 27,992,535 (GRCm39)	C220S	probably damaging	Het
Psca	C	T	15: 74,587,932 (GRCm39)	Q39*	probably null	Het
Rgs20	A	T	1: 5,091,067 (GRCm39)	M121K	possibly damaging	Het
S100z	C	T	13: 95,613,883 (GRCm39)	V76M	possibly damaging	Het
Slc30a10	T	C	1: 185,195,034 (GRCm39)	I282T	probably damaging	Het
Slc30a3	T	C	5: 31,246,088 (GRCm39)	Y214C	probably damaging	Het
Sox5	C	T	6: 143,790,570 (GRCm39)	E497K	probably benign	Het
Spata31g1	A	G	4: 42,971,519 (GRCm39)	D284G	probably benign	Het
Sptbn1	C	T	11: 30,087,551 (GRCm39)	E963K	possibly damaging	Het
Srl	T	C	16: 4,311,723 (GRCm39)	E465G	possibly damaging	Het
Tacc2	T	C	7: 130,228,304 (GRCm39)	M1663T	probably benign	Het
Tas2r119	T	G	15: 32,177,932 (GRCm39)	V166G	probably benign	Het
Tcf7l1	A	G	6: 72,611,205 (GRCm39)	V191A	probably damaging	Het
Thap7	A	T	16: 17,346,901 (GRCm39)	I92K	probably damaging	Het
Tnfsf10	A	G	3: 27,371,407 (GRCm39)	T38A	possibly damaging	Het
Trav7-5	C	G	14: 53,768,615 (GRCm39)	A61G	probably benign	Het
Trim30c	C	T	7: 104,031,553 (GRCm39)	V421I	probably benign	Het
Ugt2b38	A	T	5: 87,571,729 (GRCm39)	M101K	probably benign	Het
Vmn1r44	T	A	6: 89,870,565 (GRCm39)	C104S	probably damaging	Het
Wdr74	T	A	19: 8,715,240 (GRCm39)	V133E	probably damaging	Het
Zfp735	A	T	11: 73,580,600 (GRCm39)	Y33F	possibly damaging	Het

Other mutations in Amy1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00482:Amy1	APN	3	113,349,781 (GRCm39)	missense	probably damaging	1.00
IGL00966:Amy1	APN	3	113,349,689 (GRCm39)	missense	probably benign	0.00
IGL01153:Amy1	APN	3	113,349,724 (GRCm39)	missense	possibly damaging	0.69
IGL02415:Amy1	APN	3	113,357,234 (GRCm39)	missense	probably benign	0.27
IGL02555:Amy1	APN	3	113,358,541 (GRCm39)	missense	probably benign	0.01
IGL02572:Amy1	APN	3	113,358,722 (GRCm39)	splice site	probably benign
IGL03215:Amy1	APN	3	113,349,649 (GRCm39)	missense	probably benign
R0196:Amy1	UTSW	3	113,363,070 (GRCm39)	missense	probably benign
R0230:Amy1	UTSW	3	113,352,079 (GRCm39)	missense	probably benign	0.02
R0586:Amy1	UTSW	3	113,356,418 (GRCm39)	unclassified	probably benign
R1789:Amy1	UTSW	3	113,351,814 (GRCm39)	missense	possibly damaging	0.56
R1823:Amy1	UTSW	3	113,356,376 (GRCm39)	missense	probably null
R1922:Amy1	UTSW	3	113,358,544 (GRCm39)	missense	probably damaging	0.97
R2080:Amy1	UTSW	3	113,351,743 (GRCm39)	missense	probably benign	0.01
R3147:Amy1	UTSW	3	113,363,697 (GRCm39)	start gained	probably benign
R3437:Amy1	UTSW	3	113,349,658 (GRCm39)	missense	probably damaging	1.00
R4961:Amy1	UTSW	3	113,355,498 (GRCm39)	missense	probably damaging	1.00
R4977:Amy1	UTSW	3	113,363,026 (GRCm39)	splice site	probably null
R5304:Amy1	UTSW	3	113,352,013 (GRCm39)	missense	probably damaging	1.00
R5500:Amy1	UTSW	3	113,356,371 (GRCm39)	missense	probably damaging	1.00
R5503:Amy1	UTSW	3	113,349,709 (GRCm39)	missense	probably benign	0.26
R5706:Amy1	UTSW	3	113,349,769 (GRCm39)	missense	probably damaging	0.99
R5866:Amy1	UTSW	3	113,355,569 (GRCm39)	missense	possibly damaging	0.93
R5956:Amy1	UTSW	3	113,357,311 (GRCm39)	missense	probably benign	0.04
R6110:Amy1	UTSW	3	113,355,549 (GRCm39)	missense	probably damaging	1.00
R6259:Amy1	UTSW	3	113,363,059 (GRCm39)	missense	possibly damaging	0.73
R6278:Amy1	UTSW	3	113,355,339 (GRCm39)	missense	probably damaging	1.00
R6429:Amy1	UTSW	3	113,363,158 (GRCm39)	missense	probably damaging	1.00
R6893:Amy1	UTSW	3	113,357,281 (GRCm39)	missense	probably benign	0.00
R7136:Amy1	UTSW	3	113,357,248 (GRCm39)	missense	probably damaging	1.00
R7463:Amy1	UTSW	3	113,363,533 (GRCm39)	nonsense	probably null
Z1177:Amy1	UTSW	3	113,352,002 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTGTTACTAGAAAACCTCCTTGTTAC -3'
(R):5'- CATTACATTTCTTTCGGTACCAATG -3'

Sequencing Primer
(F):5'- GGCAATCAGCCTGCTTAAT -3'
(R):5'- ACCACATTGAACATGAACAGTATAAG -3'

Posted On

2022-02-07