Mutagenetix > Incidental Mutation

Incidental Mutation 'R9223:Bcl6b'

699611

Institutional Source

Beutler Lab

Gene Symbol

Bcl6b

Ensembl Gene

ENSMUSG00000000317

Gene Name

B cell CLL/lymphoma 6, member B

Synonyms

Bazf

MMRRC Submission

068959-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.379) question?

Stock #

R9223 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

70114954-70120624 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 70117400 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Stop codon at position 407 (Y407*)

Ref Sequence

ENSEMBL: ENSMUSP00000000326 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000000326] [ENSMUST00000153449]

AlphaFold

O88282

Predicted Effect

probably null
Transcript: ENSMUST00000000326
AA Change: Y407*

SMART Domains

Protein: ENSMUSP00000000326
Gene: ENSMUSG00000000317
AA Change: Y407*

Domain	Start	End	E-Value	Type
BTB	38	135	2.17e-25	SMART
low complexity region	143	163	N/A	INTRINSIC
ZnF_C2H2	323	345	4.11e-2	SMART
ZnF_C2H2	351	373	2.12e-4	SMART
ZnF_C2H2	379	401	8.34e-3	SMART
ZnF_C2H2	407	429	1.12e-3	SMART
ZnF_C2H2	435	458	1.33e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000153449

SMART Domains

Protein: ENSMUSP00000121365
Gene: ENSMUSG00000000317

Domain	Start	End	E-Value	Type
BTB	38	116	2.14e-6	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous null mice display decreased CD4+ and CD8+ cell numbers in the thymus. Homozygous mice for one null allele display decreased secondary responses of memory CD8+ T cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9630041A04Rik	C	A	9: 101,820,193 (GRCm39)	D204E	possibly damaging	Het
Aldh3a2	A	G	11: 61,156,037 (GRCm39)	S80P	probably benign	Het
Ccn2	T	C	10: 24,471,856 (GRCm39)	V49A	probably benign	Het
Cel	TTA	TTATA	2: 28,449,441 (GRCm39)		probably null	Het
Cerkl	A	T	2: 79,171,674 (GRCm39)	C395S	probably damaging	Het
Chst5	C	A	8: 112,617,492 (GRCm39)	V43L	probably benign	Het
Clip1	A	T	5: 123,784,337 (GRCm39)	F271I	probably damaging	Het
Clspn	A	G	4: 126,484,411 (GRCm39)	T1190A	possibly damaging	Het
Col20a1	A	T	2: 180,648,528 (GRCm39)	E938D	probably damaging	Het
Dmrta2	G	A	4: 109,839,779 (GRCm39)	V509M	probably damaging	Het
Dnah7b	T	A	1: 46,361,420 (GRCm39)	M3440K	probably benign	Het
Erlin1	A	G	19: 44,029,184 (GRCm39)		probably null	Het
Fam24b	A	G	7: 130,927,869 (GRCm39)	S107P	probably benign	Het
Fancm	T	A	12: 65,149,358 (GRCm39)	I708N	probably benign	Het
Fbxo11	A	T	17: 88,323,124 (GRCm39)	D12E		Het
Fbxw13	T	C	9: 109,024,116 (GRCm39)	D39G	probably damaging	Het
Gabrb3	T	G	7: 57,466,152 (GRCm39)	L322R	probably damaging	Het
Gm5239	A	T	18: 35,669,672 (GRCm39)	I13F	possibly damaging	Het
Heatr1	A	G	13: 12,419,802 (GRCm39)	Y375C	probably benign	Het
Helq	A	T	5: 100,946,303 (GRCm39)	S13T	possibly damaging	Het
Helz	A	G	11: 107,509,918 (GRCm39)	T514A	probably benign	Het
Hook3	A	G	8: 26,522,552 (GRCm39)	V32A		Het
Htra4	A	G	8: 25,527,048 (GRCm39)	I249T	possibly damaging	Het
Htt	G	T	5: 35,062,692 (GRCm39)	V2809L	probably benign	Het
Ifi203	T	A	1: 173,765,437 (GRCm39)	I46F	probably benign	Het
Kcna2	A	T	3: 107,012,306 (GRCm39)	I296F	possibly damaging	Het
Kndc1	A	G	7: 139,501,357 (GRCm39)	E882G	possibly damaging	Het
Krtap16-1	A	T	11: 99,876,071 (GRCm39)	D444E	probably benign	Het
Lrrtm3	ATTTT	ATTTTT	10: 63,925,035 (GRCm39)		probably null	Het
Mdga2	C	T	12: 66,615,634 (GRCm39)	D658N	possibly damaging	Het
Mkrn1	T	C	6: 39,378,183 (GRCm39)	K316R	possibly damaging	Het
Mmd2	C	T	5: 142,553,666 (GRCm39)	C165Y	probably damaging	Het
Mpdz	A	G	4: 81,202,867 (GRCm39)	F1843L	probably damaging	Het
Mrc2	G	A	11: 105,220,093 (GRCm39)	R338Q	probably damaging	Het
Naip5	C	T	13: 100,364,184 (GRCm39)	R372H	probably benign	Het
Nav2	C	A	7: 49,202,599 (GRCm39)	S1461Y	probably damaging	Het
Nol8	T	A	13: 49,814,738 (GRCm39)	V282D	possibly damaging	Het
Nup98	C	A	7: 101,834,167 (GRCm39)	G265V	possibly damaging	Het
Or1ak2	T	C	2: 36,827,911 (GRCm39)	F260S	probably damaging	Het
Or2d3b	A	G	7: 106,513,980 (GRCm39)	T192A	possibly damaging	Het
Or2h15	C	T	17: 38,442,012 (GRCm39)	E24K	possibly damaging	Het
Or4f58	T	A	2: 111,851,517 (GRCm39)	K227N	possibly damaging	Het
Or4f62	T	A	2: 111,986,473 (GRCm39)	M59K	possibly damaging	Het
Or8k18	G	T	2: 86,085,544 (GRCm39)	F164L	possibly damaging	Het
Otogl	T	A	10: 107,690,205 (GRCm39)	E888D	probably damaging	Het
Pcdhgc4	A	G	18: 37,948,685 (GRCm39)	I34V	possibly damaging	Het
Ppp1r12b	T	C	1: 134,807,376 (GRCm39)	R417G	probably benign	Het
Rtn4	A	G	11: 29,656,778 (GRCm39)	S311G	probably benign	Het
Serinc3	A	G	2: 163,478,812 (GRCm39)	V105A	probably benign	Het
Serpina3f	A	G	12: 104,183,444 (GRCm39)	D102G	possibly damaging	Het
Sik3	A	G	9: 46,066,772 (GRCm39)	I184V	probably damaging	Het
Spopfm2	A	C	3: 94,082,950 (GRCm39)	L287R	probably damaging	Het
Tex35	A	T	1: 156,935,436 (GRCm39)	C21S	probably benign	Het
Tfap2b	T	C	1: 19,282,649 (GRCm39)		probably null	Het
Thbs4	C	T	13: 92,897,998 (GRCm39)	C607Y	probably damaging	Het
Tmem144	A	T	3: 79,734,964 (GRCm39)	N151K	probably benign	Het
Tomm70a	T	A	16: 56,963,166 (GRCm39)	M395K	probably benign	Het
Trim43b	A	C	9: 88,967,663 (GRCm39)	H324Q	probably benign	Het
Vmn2r116	A	T	17: 23,620,141 (GRCm39)	Y625F	probably damaging	Het
Yipf3	A	T	17: 46,559,798 (GRCm39)	N38I	probably damaging	Het
Zfp804b	T	A	5: 6,821,496 (GRCm39)	E522D	probably benign	Het

Other mutations in Bcl6b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00561:Bcl6b	APN	11	70,119,310 (GRCm39)	unclassified	probably benign
IGL01942:Bcl6b	APN	11	70,117,569 (GRCm39)	missense	probably damaging	1.00
IGL02338:Bcl6b	APN	11	70,119,918 (GRCm39)	missense	probably damaging	1.00
IGL02725:Bcl6b	APN	11	70,119,344 (GRCm39)	missense	probably damaging	1.00
IGL02741:Bcl6b	APN	11	70,119,942 (GRCm39)	missense	probably damaging	0.99
R4407:Bcl6b	UTSW	11	70,116,929 (GRCm39)	missense	probably damaging	1.00
R5508:Bcl6b	UTSW	11	70,116,919 (GRCm39)	missense	probably damaging	1.00
R5998:Bcl6b	UTSW	11	70,119,009 (GRCm39)	missense	probably damaging	1.00
R6257:Bcl6b	UTSW	11	70,116,878 (GRCm39)	missense	probably benign
R6600:Bcl6b	UTSW	11	70,119,954 (GRCm39)	missense	probably damaging	1.00
R7107:Bcl6b	UTSW	11	70,117,396 (GRCm39)	missense	probably damaging	1.00
R7896:Bcl6b	UTSW	11	70,117,848 (GRCm39)	nonsense	probably null
R8690:Bcl6b	UTSW	11	70,117,447 (GRCm39)	missense	probably damaging	0.99
R9594:Bcl6b	UTSW	11	70,118,858 (GRCm39)	critical splice donor site	probably null
R9733:Bcl6b	UTSW	11	70,119,323 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AGGCTGTCGCTTATTCCTAGC -3'
(R):5'- GCACGTTTTAACCGACCTG -3'

Sequencing Primer
(F):5'- TAGCACTTCTGGCAAGACTCG -3'
(R):5'- GCACGTTTTAACCGACCTGCTAAC -3'

Posted On

2022-02-07