Incidental Mutation 'R9224:Slc29a1'
ID 699734
Institutional Source Beutler Lab
Gene Symbol Slc29a1
Ensembl Gene ENSMUSG00000023942
Gene Name solute carrier family 29 (nucleoside transporters), member 1
Synonyms 1200014D21Rik, NBMPR-sensitive equilibrative nucleoside transporter, ENT1
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R9224 (G1)
Quality Score 225.009
Status Not validated
Chromosome 17
Chromosomal Location 45896126-45910532 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 45897153 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Leucine at position 378 (V378L)
Ref Sequence ENSEMBL: ENSMUSP00000129242 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000051574] [ENSMUST00000064889] [ENSMUST00000097317] [ENSMUST00000163492] [ENSMUST00000163905] [ENSMUST00000164217] [ENSMUST00000164618] [ENSMUST00000164769] [ENSMUST00000166119] [ENSMUST00000166633] [ENSMUST00000167195] [ENSMUST00000167332] [ENSMUST00000167692] [ENSMUST00000168274] [ENSMUST00000169729] [ENSMUST00000170113] [ENSMUST00000170488] [ENSMUST00000171081] [ENSMUST00000171847] [ENSMUST00000172301]
AlphaFold Q9JIM1
Predicted Effect probably damaging
Transcript: ENSMUST00000051574
AA Change: V380L

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000063096
Gene: ENSMUSG00000023942
AA Change: V380L

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 458 4.5e-131 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000064889
AA Change: V378L

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000063757
Gene: ENSMUSG00000023942
AA Change: V378L

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 456 2.1e-130 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000097317
AA Change: V380L

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000094923
Gene: ENSMUSG00000023942
AA Change: V380L

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 458 4.5e-131 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000163492
AA Change: V378L

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000129242
Gene: ENSMUSG00000023942
AA Change: V378L

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 456 2.1e-130 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000163905
SMART Domains Protein: ENSMUSP00000129240
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 80 102 N/A INTRINSIC
transmembrane domain 109 130 N/A INTRINSIC
transmembrane domain 135 157 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000164217
SMART Domains Protein: ENSMUSP00000131646
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 262 8.4e-46 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000164618
SMART Domains Protein: ENSMUSP00000126934
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 80 102 N/A INTRINSIC
transmembrane domain 109 130 N/A INTRINSIC
transmembrane domain 135 157 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000164769
SMART Domains Protein: ENSMUSP00000131116
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 358 2.7e-81 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000166119
AA Change: V380L

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000128763
Gene: ENSMUSG00000023942
AA Change: V380L

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 458 4.5e-131 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000166633
SMART Domains Protein: ENSMUSP00000131075
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 195 1e-21 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000167195
SMART Domains Protein: ENSMUSP00000133162
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 48 70 N/A INTRINSIC
transmembrane domain 77 98 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000167332
SMART Domains Protein: ENSMUSP00000131483
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000167692
AA Change: V380L

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000131976
Gene: ENSMUSG00000023942
AA Change: V380L

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 458 4.5e-131 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000168274
Predicted Effect probably benign
Transcript: ENSMUST00000169729
SMART Domains Protein: ENSMUSP00000127343
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 44 66 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000170113
SMART Domains Protein: ENSMUSP00000128304
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000170488
Predicted Effect probably benign
Transcript: ENSMUST00000171081
SMART Domains Protein: ENSMUSP00000131217
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 262 8.4e-46 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000171847
AA Change: V378L

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000126703
Gene: ENSMUSG00000023942
AA Change: V378L

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 76 98 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
Pfam:Nucleoside_tran 144 456 2.1e-130 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000172301
SMART Domains Protein: ENSMUSP00000129345
Gene: ENSMUSG00000023942

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
transmembrane domain 80 102 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.3%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the equilibrative nucleoside transporter family. The gene encodes a transmembrane glycoprotein that localizes to the plasma and mitochondrial membranes and mediates the cellular uptake of nucleosides from the surrounding medium. The protein is categorized as an equilibrative (as opposed to concentrative) transporter that is sensitive to inhibition by nitrobenzylthioinosine (NBMPR). Nucleoside transporters are required for nucleotide synthesis in cells that lack de novo nucleoside synthesis pathways, and are also necessary for the uptake of cytotoxic nucleosides used for cancer and viral chemotherapies. Multiple alternatively spliced variants, encoding the same protein, have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a targeted null allele exhibit a slightly decreased body weight, increased alcohol preference and alcohol consumption, and reduced hypnotic and ataxic responses to ethanol associated with a reduction in adenosine tone. Adenosine uptake is almost completely abolished in mice homozygous for a knock-out allele. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 112 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1810055G02Rik C T 19: 3,767,100 (GRCm39) S229L possibly damaging Het
Actc1 TGA T 2: 113,879,710 (GRCm39) probably null Het
Actl9 G A 17: 33,653,004 (GRCm39) A355T probably benign Het
Adamts8 A G 9: 30,854,188 (GRCm39) Q19R probably benign Het
Akr1c14 A T 13: 4,130,695 (GRCm39) Y216F possibly damaging Het
Alms1 T C 6: 85,598,770 (GRCm39) C1199R possibly damaging Het
Apc2 T C 10: 80,150,111 (GRCm39) S1722P probably damaging Het
Arid1a T C 4: 133,409,167 (GRCm39) E1395G unknown Het
Atp6v0e2 T C 6: 48,516,190 (GRCm39) V46A possibly damaging Het
Bcar3 A G 3: 122,319,091 (GRCm39) R743G probably damaging Het
Bhmt2 A G 13: 93,805,854 (GRCm39) V56A probably damaging Het
Bsn C A 9: 107,982,686 (GRCm39) R917L Het
Cabyr T G 18: 12,887,278 (GRCm39) V303G possibly damaging Het
Carmil1 A T 13: 24,292,512 (GRCm39) I429N probably damaging Het
Ccdc27 T C 4: 154,122,174 (GRCm39) N235D unknown Het
Ccdc61 T C 7: 18,637,746 (GRCm39) M37V probably benign Het
Cd40 A T 2: 164,898,716 (GRCm39) I48F unknown Het
Cdk13 A T 13: 17,941,071 (GRCm39) S664R probably damaging Het
Cel TTA TTATA 2: 28,449,441 (GRCm39) probably null Het
Cfap46 T A 7: 139,258,416 (GRCm39) R286* probably null Het
Ckap2 A C 8: 22,659,954 (GRCm39) I509S possibly damaging Het
Clptm1l A T 13: 73,752,344 (GRCm39) probably benign Het
Col11a1 T G 3: 114,001,929 (GRCm39) M1591R unknown Het
Col6a5 C A 9: 105,814,594 (GRCm39) A473S unknown Het
Cxcr2 T A 1: 74,197,756 (GRCm39) D83E probably damaging Het
Cyp2c39 G A 19: 39,527,332 (GRCm39) C226Y probably benign Het
Ddr1 A C 17: 36,000,609 (GRCm39) F352C probably damaging Het
Defb22 T A 2: 152,327,721 (GRCm39) T155S unknown Het
Dennd4c G T 4: 86,738,170 (GRCm39) E935* probably null Het
Dst A C 1: 34,330,879 (GRCm39) E4889D probably damaging Het
Efcab3 A G 11: 104,661,801 (GRCm39) Q1314R probably benign Het
Emilin1 T A 5: 31,074,823 (GRCm39) C355S probably damaging Het
Enpp3 C T 10: 24,650,716 (GRCm39) V807I probably benign Het
Fcnb T A 2: 27,969,160 (GRCm39) D179V probably damaging Het
Ficd T A 5: 113,875,196 (GRCm39) D88E probably benign Het
Fndc3b T C 3: 27,524,450 (GRCm39) K437E possibly damaging Het
Fyb2 T A 4: 104,853,105 (GRCm39) W566R probably benign Het
Gm14403 A G 2: 177,200,336 (GRCm39) Q94R probably benign Het
Gm32687 T A 10: 81,714,866 (GRCm39) I86N probably benign Het
Gpam T G 19: 55,075,907 (GRCm39) D235A probably damaging Het
Gstt4 T C 10: 75,651,046 (GRCm39) E192G probably damaging Het
H2-Q6 T G 17: 35,644,309 (GRCm39) V97G probably benign Het
Hcn1 G A 13: 118,062,254 (GRCm39) G507S unknown Het
Hydin T C 8: 111,259,516 (GRCm39) I2496T probably benign Het
Jund A G 8: 71,151,864 (GRCm39) D53G probably damaging Het
Kat6b T A 14: 21,720,031 (GRCm39) M1461K probably benign Het
Lnx1 T G 5: 74,766,810 (GRCm39) K435Q probably benign Het
Lpcat1 C A 13: 73,658,161 (GRCm39) L316M probably damaging Het
Lrrtm3 ATTTT ATTTTT 10: 63,925,035 (GRCm39) probably null Het
Ly6c1 T A 15: 74,916,465 (GRCm39) T126S probably benign Het
Macf1 A G 4: 123,326,690 (GRCm39) S4938P probably damaging Het
Map2k2 T C 10: 80,954,008 (GRCm39) V158A possibly damaging Het
Map3k4 A G 17: 12,456,973 (GRCm39) V1323A probably damaging Het
Map4k5 A T 12: 69,939,467 (GRCm39) V23E possibly damaging Het
Med30 T G 15: 52,582,839 (GRCm39) L92R probably damaging Het
Mroh8 C T 2: 157,063,069 (GRCm39) G851S possibly damaging Het
Msmb T A 14: 31,880,060 (GRCm39) C83* probably null Het
Mtif2 A T 11: 29,494,364 (GRCm39) R655S probably benign Het
Myo10 C T 15: 25,808,081 (GRCm39) S1901L probably benign Het
Myom2 A T 8: 15,178,804 (GRCm39) I1279F possibly damaging Het
Nat9 T C 11: 115,075,441 (GRCm39) I67V probably damaging Het
Ncam1 A G 9: 49,419,995 (GRCm39) S774P probably damaging Het
Ndufaf6 T C 4: 11,062,089 (GRCm39) T181A probably damaging Het
Nlrp4f T A 13: 65,332,829 (GRCm39) K110* probably null Het
Nlrp9b T C 7: 19,753,217 (GRCm39) S41P probably benign Het
Nlrp9b A G 7: 19,757,476 (GRCm39) T238A probably benign Het
Noxo1 A T 17: 24,919,305 (GRCm39) E342D probably benign Het
Nt5dc2 T C 14: 30,857,665 (GRCm39) M55T probably benign Het
Or1j14 A T 2: 36,417,838 (GRCm39) Q138L probably benign Het
Or2ag18 T C 7: 106,405,489 (GRCm39) Y60C probably damaging Het
Or2f1 T C 6: 42,721,904 (GRCm39) F311S probably benign Het
Or2h2c T C 17: 37,422,767 (GRCm39) T36A possibly damaging Het
Or5al6 T A 2: 85,976,220 (GRCm39) N286I probably damaging Het
Or6c210 C A 10: 129,496,007 (GRCm39) L111M probably damaging Het
Or6c6 T A 10: 129,186,450 (GRCm39) M6K probably benign Het
Or9s18 C T 13: 65,300,203 (GRCm39) T55I probably damaging Het
P4ha2 C T 11: 54,009,963 (GRCm39) P240L possibly damaging Het
Pcdha11 T A 18: 37,139,073 (GRCm39) L234Q probably damaging Het
Pgm3 C T 9: 86,438,415 (GRCm39) A457T probably benign Het
Pira12 T C 7: 3,900,234 (GRCm39) T123A probably benign Het
Pkp4 T C 2: 59,144,738 (GRCm39) V533A probably benign Het
Plac8l1 T C 18: 42,325,702 (GRCm39) T68A possibly damaging Het
Pou2f3 A T 9: 43,050,694 (GRCm39) I222N probably damaging Het
Ppp1r14d T C 2: 119,060,222 (GRCm39) D20G probably benign Het
Ppp1r37 C A 7: 19,265,729 (GRCm39) G679V probably damaging Het
Ppp6r2 T A 15: 89,146,599 (GRCm39) I199N probably damaging Het
Prune2 A G 19: 17,097,393 (GRCm39) T966A probably damaging Het
Ptdss2 T C 7: 140,734,798 (GRCm39) V375A probably benign Het
Rara TGCCCCGC TGCCCCGCCCCGC 11: 98,857,236 (GRCm39) probably null Het
Rin2 T A 2: 145,720,822 (GRCm39) C718* probably null Het
Rptor C T 11: 119,785,113 (GRCm39) T1170I probably benign Het
Samd5 T C 10: 9,550,259 (GRCm39) Y150C probably damaging Het
Setd1b T C 5: 123,296,773 (GRCm39) S1245P unknown Het
Sipa1l2 T C 8: 126,218,716 (GRCm39) E207G probably damaging Het
Slc2a12 T G 10: 22,541,261 (GRCm39) I372S possibly damaging Het
Slc7a10 T A 7: 34,894,639 (GRCm39) Y99* probably null Het
Smco3 A G 6: 136,808,517 (GRCm39) V119A probably damaging Het
Sptlc3 C T 2: 139,336,154 (GRCm39) T10I probably benign Het
Sri T A 5: 8,113,323 (GRCm39) W105R probably damaging Het
Stk35 T C 2: 129,652,491 (GRCm39) Y331H probably damaging Het
Tipin T C 9: 64,195,430 (GRCm39) I12T probably benign Het
Tlr5 A G 1: 182,802,693 (GRCm39) T666A probably benign Het
Tmprss11g C A 5: 86,640,003 (GRCm39) V222L probably benign Het
Tnfrsf11b T A 15: 54,115,556 (GRCm39) Y347F possibly damaging Het
Traf6 A G 2: 101,527,512 (GRCm39) T421A probably benign Het
Trrap T A 5: 144,708,049 (GRCm39) D30E possibly damaging Het
Ube2k T A 5: 65,751,847 (GRCm39) Y162N probably damaging Het
Uck2 A T 1: 167,065,171 (GRCm39) V49E probably damaging Het
Vcam1 A T 3: 115,904,592 (GRCm39) Y718* probably null Het
Zan T C 5: 137,472,269 (GRCm39) N159S probably damaging Het
Zfp438 A G 18: 5,210,788 (GRCm39) L750P probably damaging Het
Zfp54 A T 17: 21,654,037 (GRCm39) Y177F probably benign Het
Other mutations in Slc29a1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00562:Slc29a1 APN 17 45,900,918 (GRCm39) missense probably damaging 1.00
IGL01617:Slc29a1 APN 17 45,900,375 (GRCm39) missense probably benign 0.02
IGL02154:Slc29a1 APN 17 45,897,089 (GRCm39) missense probably damaging 1.00
soldate UTSW 17 45,897,189 (GRCm39) missense probably damaging 1.00
veteran UTSW 17 45,900,847 (GRCm39) critical splice donor site probably null
veterinarian UTSW 17 45,897,035 (GRCm39) missense probably damaging 1.00
workhorse UTSW 17 45,899,992 (GRCm39) nonsense probably null
R0288:Slc29a1 UTSW 17 45,900,730 (GRCm39) missense probably damaging 1.00
R1168:Slc29a1 UTSW 17 45,901,204 (GRCm39) missense probably damaging 1.00
R1676:Slc29a1 UTSW 17 45,899,936 (GRCm39) missense probably damaging 0.98
R1777:Slc29a1 UTSW 17 45,898,234 (GRCm39) missense probably damaging 1.00
R2032:Slc29a1 UTSW 17 45,897,035 (GRCm39) missense probably damaging 1.00
R2413:Slc29a1 UTSW 17 45,896,643 (GRCm39) missense probably damaging 1.00
R3917:Slc29a1 UTSW 17 45,899,899 (GRCm39) splice site probably null
R4513:Slc29a1 UTSW 17 45,899,992 (GRCm39) nonsense probably null
R4583:Slc29a1 UTSW 17 45,900,882 (GRCm39) missense possibly damaging 0.67
R5244:Slc29a1 UTSW 17 45,899,339 (GRCm39) unclassified probably benign
R6174:Slc29a1 UTSW 17 45,900,854 (GRCm39) missense probably damaging 1.00
R6284:Slc29a1 UTSW 17 45,900,847 (GRCm39) critical splice donor site probably null
R6446:Slc29a1 UTSW 17 45,900,171 (GRCm39) missense possibly damaging 0.88
R6607:Slc29a1 UTSW 17 45,899,853 (GRCm39) splice site probably null
R7133:Slc29a1 UTSW 17 45,900,897 (GRCm39) missense possibly damaging 0.50
R7153:Slc29a1 UTSW 17 45,896,688 (GRCm39) missense probably damaging 1.00
R7248:Slc29a1 UTSW 17 45,903,108 (GRCm39) missense probably damaging 1.00
R7271:Slc29a1 UTSW 17 45,899,288 (GRCm39) missense probably benign 0.01
R7604:Slc29a1 UTSW 17 45,903,250 (GRCm39) splice site probably null
R7811:Slc29a1 UTSW 17 45,897,189 (GRCm39) missense probably damaging 1.00
R8406:Slc29a1 UTSW 17 45,900,706 (GRCm39) missense probably damaging 1.00
R8751:Slc29a1 UTSW 17 45,900,688 (GRCm39) missense probably benign 0.00
R8851:Slc29a1 UTSW 17 45,900,402 (GRCm39) missense probably damaging 1.00
R9301:Slc29a1 UTSW 17 45,897,063 (GRCm39) missense probably damaging 1.00
X0067:Slc29a1 UTSW 17 45,901,251 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GTAAGTCCTGCCTGATGTCAC -3'
(R):5'- TCGACATATCATAGGCACCACTG -3'

Sequencing Primer
(F):5'- TAAGTCCTGCCTGATGTCACCAAATC -3'
(R):5'- TGCGCCCCTAGCAATCAG -3'
Posted On 2022-02-07