Mutagenetix > Incidental Mutation

Incidental Mutation 'R9227:Pcare'

699963

Institutional Source

Beutler Lab

Gene Symbol

Pcare

Ensembl Gene

ENSMUSG00000044375

Gene Name

photoreceptor cilium actin regulator

Synonyms

BC027072

MMRRC Submission

068984-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.080) question?

Stock #

R9227 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

72050919-72059904 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 72057217 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 820 (L820P)

Ref Sequence

ENSEMBL: ENSMUSP00000051871 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000057405]

AlphaFold

Q6PAC4

Predicted Effect

probably damaging
Transcript: ENSMUST00000057405
AA Change: L820P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000051871
Gene: ENSMUSG00000044375
AA Change: L820P

Domain	Start	End	E-Value	Type
Pfam:Retinal	1	1255	N/A	PFAM

Meta Mutation Damage Score

0.1935

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

100% (79/79)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is highly expressed in photoreceptors and may associate with the primary cilium of the outer segment. The encoded protein appears to undergo post-translational lipid modification. Nonsense and missense variants of this gene appear to cause a recessive form of retinitis pigmentosa. [provided by RefSeq, Jun 2010]
PHENOTYPE: Mice homozygous for a knock-out allele develop severe early-onset retinal degeneration associated with a disorganized outer segment, progressive thinning of the outer nuclear layer, microglia activation, decreased a- and b-wave amplitudes, and nearly undetectable ERG responses by 8 weeks of age. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adarb1	A	T	10: 77,157,626 (GRCm39)	F274I	probably damaging	Het
Adprhl1	C	T	8: 13,271,974 (GRCm39)	V1595I	probably benign	Het
Anxa6	A	G	11: 54,898,694 (GRCm39)	V160A	probably benign	Het
Appl1	T	C	14: 26,645,692 (GRCm39)	E706G	unknown	Het
Arhgap21	T	C	2: 20,860,469 (GRCm39)	T1313A	possibly damaging	Het
Armc2	T	C	10: 41,823,935 (GRCm39)	Y511C	probably damaging	Het
Atp1a1	A	T	3: 101,499,750 (GRCm39)	C111S	probably damaging	Het
Atp6v0d2	T	A	4: 19,878,374 (GRCm39)	M300L	probably benign	Het
C1ra	T	C	6: 124,493,739 (GRCm39)	C164R	probably damaging	Het
Cacna1h	T	C	17: 25,599,856 (GRCm39)	Y1659C	probably damaging	Het
Catsperb	T	C	12: 101,516,053 (GRCm39)	I563T	probably benign	Het
Cblif	G	A	19: 11,737,748 (GRCm39)	W386*	probably null	Het
Cd180	TA	TAA	13: 102,841,514 (GRCm39)		probably null	Het
Cd55b	A	T	1: 130,350,619 (GRCm39)	L26*	probably null	Het
Cdc42bpa	A	G	1: 179,933,638 (GRCm39)	N759S	probably benign	Het
Cenpj	C	T	14: 56,802,176 (GRCm39)	E130K	possibly damaging	Het
Cep250	C	T	2: 155,812,042 (GRCm39)	A446V	unknown	Het
Chd7	C	T	4: 8,805,272 (GRCm39)	S777L	probably benign	Het
Chrm3	C	A	13: 9,928,479 (GRCm39)	V186L	probably benign	Het
Clrn2	A	G	5: 45,621,283 (GRCm39)	T226A	probably damaging	Het
Col3a1	C	T	1: 45,383,138 (GRCm39)	P1071S	unknown	Het
Dytn	A	T	1: 63,686,611 (GRCm39)	V353D	probably benign	Het
Egfem1	G	A	3: 29,411,317 (GRCm39)	E155K	probably benign	Het
Eif3m	A	T	2: 104,831,705 (GRCm39)	M285K	probably damaging	Het
Fam135b	T	C	15: 71,335,856 (GRCm39)	K446R	probably benign	Het
Fam186a	T	C	15: 99,853,384 (GRCm39)	T119A	unknown	Het
Frmd4a	T	C	2: 4,612,844 (GRCm39)	S1025P	possibly damaging	Het
Fubp3	A	G	2: 31,502,564 (GRCm39)	H449R	probably benign	Het
Fyco1	A	T	9: 123,648,211 (GRCm39)	I1241N	probably damaging	Het
Gabpb2	A	T	3: 95,111,998 (GRCm39)	M77K	probably damaging	Het
Gfpt1	T	A	6: 87,027,906 (GRCm39)	I4K	probably damaging	Het
Glis1	T	C	4: 107,425,327 (GRCm39)	S313P	probably benign	Het
Golga4	T	A	9: 118,385,941 (GRCm39)	M1021K	possibly damaging	Het
Grid2ip	G	A	5: 143,359,194 (GRCm39)	R270Q	probably damaging	Het
Hps4	G	A	5: 112,525,905 (GRCm39)	S642N	possibly damaging	Het
Ifit1	A	G	19: 34,625,236 (GRCm39)	E124G	possibly damaging	Het
Ifna14	T	C	4: 88,489,752 (GRCm39)	D95G	probably benign	Het
Ilkap	A	C	1: 91,314,937 (GRCm39)	I142S	probably benign	Het
Inpp5e	C	T	2: 26,288,616 (GRCm39)	R588H	probably damaging	Het
Kif1b	A	C	4: 149,322,357 (GRCm39)	M854R	probably damaging	Het
Lcn6	A	T	2: 25,570,107 (GRCm39)	K91M	probably damaging	Het
Lpin1	A	T	12: 16,588,483 (GRCm39)	S902R	unknown	Het
Lrig1	C	A	6: 94,607,113 (GRCm39)	C160F	probably damaging	Het
Mapk13	T	C	17: 28,994,532 (GRCm39)	I141T	probably damaging	Het
Mapkapk3	A	G	9: 107,137,354 (GRCm39)	L175P	probably damaging	Het
Micall2	A	G	5: 139,701,827 (GRCm39)	V472A	unknown	Het
Mmp15	T	C	8: 96,092,959 (GRCm39)	F113L	probably benign	Het
Msh2	T	G	17: 88,026,717 (GRCm39)	S738A	probably benign	Het
Myb	C	T	10: 21,030,612 (GRCm39)	D62N	probably benign	Het
Myo1f	T	C	17: 33,795,424 (GRCm39)	V53A	probably damaging	Het
Ncf1	A	T	5: 134,250,718 (GRCm39)	N367K	probably benign	Het
Nim1k	C	A	13: 120,174,118 (GRCm39)	V259F	probably damaging	Het
Nme8	T	G	13: 19,874,384 (GRCm39)	I139L	probably benign	Het
Odam	T	C	5: 88,034,457 (GRCm39)	F46L	probably benign	Het
Ogfr	GGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGG	GGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGG	2: 180,237,059 (GRCm39)		probably benign	Het
Or7a42	G	A	10: 78,791,929 (GRCm39)	D297N	possibly damaging	Het
Pcdha9	A	G	18: 37,131,954 (GRCm39)	E341G	probably damaging	Het
Pmepa1	T	C	2: 173,117,962 (GRCm39)	T6A	probably benign	Het
Poglut1	A	T	16: 38,355,168 (GRCm39)	D219E	possibly damaging	Het
Racgap1	A	G	15: 99,534,078 (GRCm39)	S145P	possibly damaging	Het
Rasgef1a	C	T	6: 118,066,110 (GRCm39)	T441I	possibly damaging	Het
Rbm6	T	C	9: 107,664,498 (GRCm39)	T844A	probably benign	Het
Rbmyf9	T	G	Y: 3,774,819 (GRCm39)	D5E	probably damaging	Het
Rell1	T	C	5: 64,097,105 (GRCm39)		probably benign	Het
Ripk3	A	G	14: 56,023,303 (GRCm39)	F134S	probably benign	Het
Rnf169	T	C	7: 99,574,699 (GRCm39)	D632G	possibly damaging	Het
Sclt1	A	T	3: 41,665,631 (GRCm39)	W146R	probably benign	Het
Setd5	T	C	6: 113,098,755 (GRCm39)	F796S	possibly damaging	Het
Slc24a5	G	T	2: 124,922,568 (GRCm39)	G110V	probably damaging	Het
Slc30a10	T	A	1: 185,187,391 (GRCm39)	M44K	probably damaging	Het
Slc38a10	T	A	11: 119,996,781 (GRCm39)	D772V	probably benign	Het
Thy1	C	T	9: 43,958,004 (GRCm39)	T44I	probably damaging	Het
Tinagl1	G	T	4: 130,061,271 (GRCm39)	S324Y	probably benign	Het
Tll2	T	A	19: 41,093,436 (GRCm39)	Y477F	probably benign	Het
Tmco1	C	T	1: 167,136,132 (GRCm39)		probably benign	Het
Tmco6	T	C	18: 36,874,719 (GRCm39)	L402P	probably damaging	Het
Tnrc18	G	T	5: 142,773,392 (GRCm39)	A479D		Het
Uba7	T	C	9: 107,853,001 (GRCm39)	V12A	possibly damaging	Het
Usp5	T	C	6: 124,795,599 (GRCm39)	D598G	probably damaging	Het
Vmn1r158	C	T	7: 22,489,469 (GRCm39)	V247I	probably benign	Het
Vpreb1b	A	G	16: 17,798,801 (GRCm39)	N96D	probably damaging	Het
Zcchc17	A	T	4: 130,230,928 (GRCm39)	M87K	probably damaging	Het

Other mutations in Pcare

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02010:Pcare	APN	17	72,056,459 (GRCm39)	missense	probably benign	0.38
IGL02033:Pcare	APN	17	72,058,076 (GRCm39)	missense	probably damaging	1.00
IGL02711:Pcare	APN	17	72,056,377 (GRCm39)	missense	probably benign	0.15
IGL03185:Pcare	APN	17	72,056,332 (GRCm39)	missense	probably damaging	0.98
IGL03242:Pcare	APN	17	72,057,266 (GRCm39)	missense	probably benign	0.01
R0367:Pcare	UTSW	17	72,057,471 (GRCm39)	missense	probably damaging	1.00
R0413:Pcare	UTSW	17	72,059,212 (GRCm39)	missense	probably benign	0.38
R0465:Pcare	UTSW	17	72,057,155 (GRCm39)	missense	probably benign	0.42
R0535:Pcare	UTSW	17	72,059,434 (GRCm39)	missense	probably benign	0.01
R0681:Pcare	UTSW	17	72,056,509 (GRCm39)	missense	probably benign	0.00
R0736:Pcare	UTSW	17	72,051,659 (GRCm39)	missense	probably benign	0.00
R1406:Pcare	UTSW	17	72,056,156 (GRCm39)	missense	probably benign	0.18
R1406:Pcare	UTSW	17	72,056,156 (GRCm39)	missense	probably benign	0.18
R1530:Pcare	UTSW	17	72,056,473 (GRCm39)	missense	probably benign	0.01
R1723:Pcare	UTSW	17	72,057,373 (GRCm39)	missense	probably damaging	1.00
R1941:Pcare	UTSW	17	72,059,063 (GRCm39)	missense	probably damaging	1.00
R2179:Pcare	UTSW	17	72,059,521 (GRCm39)	missense	probably damaging	1.00
R2232:Pcare	UTSW	17	72,056,279 (GRCm39)	missense	probably benign	0.00
R2519:Pcare	UTSW	17	72,058,642 (GRCm39)	missense	probably damaging	1.00
R2997:Pcare	UTSW	17	72,051,706 (GRCm39)	critical splice acceptor site	probably benign
R3899:Pcare	UTSW	17	72,057,155 (GRCm39)	missense	probably benign	0.00
R4890:Pcare	UTSW	17	72,059,306 (GRCm39)	missense	possibly damaging	0.50
R4898:Pcare	UTSW	17	72,058,066 (GRCm39)	missense	probably damaging	1.00
R5347:Pcare	UTSW	17	72,056,930 (GRCm39)	missense	probably benign	0.00
R5436:Pcare	UTSW	17	72,057,837 (GRCm39)	missense	probably damaging	1.00
R5527:Pcare	UTSW	17	72,059,635 (GRCm39)	missense	probably damaging	1.00
R5556:Pcare	UTSW	17	72,059,420 (GRCm39)	missense	possibly damaging	0.81
R5625:Pcare	UTSW	17	72,058,321 (GRCm39)	missense	probably damaging	1.00
R5707:Pcare	UTSW	17	72,058,567 (GRCm39)	missense	possibly damaging	0.90
R5932:Pcare	UTSW	17	72,058,748 (GRCm39)	missense	probably damaging	1.00
R6043:Pcare	UTSW	17	72,057,037 (GRCm39)	missense	probably damaging	1.00
R6314:Pcare	UTSW	17	72,059,452 (GRCm39)	missense	probably benign	0.04
R6513:Pcare	UTSW	17	72,051,701 (GRCm39)	missense	probably damaging	1.00
R7575:Pcare	UTSW	17	72,057,850 (GRCm39)	missense	probably damaging	1.00
R7638:Pcare	UTSW	17	72,057,880 (GRCm39)	missense	probably damaging	1.00
R7848:Pcare	UTSW	17	72,056,188 (GRCm39)	missense	probably benign	0.04
R8317:Pcare	UTSW	17	72,056,197 (GRCm39)	missense	probably benign	0.10
R8530:Pcare	UTSW	17	72,059,101 (GRCm39)	missense	probably damaging	1.00
R8671:Pcare	UTSW	17	72,058,372 (GRCm39)	missense	probably benign	0.34
R8831:Pcare	UTSW	17	72,059,305 (GRCm39)	missense	probably benign	0.01
R8854:Pcare	UTSW	17	72,056,326 (GRCm39)	missense	probably benign
R8941:Pcare	UTSW	17	72,059,137 (GRCm39)	missense	probably benign	0.06
R9230:Pcare	UTSW	17	72,057,217 (GRCm39)	missense	probably damaging	1.00
R9380:Pcare	UTSW	17	72,056,351 (GRCm39)	missense	possibly damaging	0.95
R9390:Pcare	UTSW	17	72,057,983 (GRCm39)	missense	probably benign	0.09
R9618:Pcare	UTSW	17	72,057,817 (GRCm39)	missense	probably damaging	1.00
X0035:Pcare	UTSW	17	72,051,706 (GRCm39)	critical splice acceptor site	probably benign
Z1177:Pcare	UTSW	17	72,057,398 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCGGATCTAGTGCTGTGTAG -3'
(R):5'- GGAACTGTAGGAACTTGGGGTC -3'

Sequencing Primer
(F):5'- AGCAAGTCCATGGGGCTC -3'
(R):5'- TCAAGCCCCTGCCTCAG -3'

Posted On

2022-02-07