Incidental Mutation 'R9234:C2cd3'
ID 700982
Institutional Source Beutler Lab
Gene Symbol C2cd3
Ensembl Gene ENSMUSG00000047248
Gene Name C2 calcium-dependent domain containing 3
Synonyms
MMRRC Submission
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R9234 (G1)
Quality Score 225.009
Status Not validated
Chromosome 7
Chromosomal Location 100021440-100119359 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 100049012 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Cysteine at position 61 (Y61C)
Gene Model predicted gene model for transcript(s): [ENSMUST00000051777] [ENSMUST00000098259] [ENSMUST00000133464]
AlphaFold Q52KB6
Predicted Effect probably damaging
Transcript: ENSMUST00000051777
AA Change: Y439C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000062637
Gene: ENSMUSG00000047248
AA Change: Y439C

DomainStartEndE-ValueType
low complexity region 2 19 N/A INTRINSIC
low complexity region 406 417 N/A INTRINSIC
C2 524 662 2.36e1 SMART
C2 790 899 3.73e0 SMART
C2 989 1129 1.47e1 SMART
C2 1182 1321 1.63e1 SMART
C2 1617 1724 1.43e-2 SMART
low complexity region 1892 1906 N/A INTRINSIC
low complexity region 2037 2049 N/A INTRINSIC
low complexity region 2110 2125 N/A INTRINSIC
low complexity region 2180 2197 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000098259
AA Change: Y439C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000095859
Gene: ENSMUSG00000047248
AA Change: Y439C

DomainStartEndE-ValueType
low complexity region 2 19 N/A INTRINSIC
low complexity region 406 417 N/A INTRINSIC
C2 524 662 2.36e1 SMART
C2 790 899 3.73e0 SMART
C2 989 1129 1.47e1 SMART
C2 1182 1321 1.63e1 SMART
C2 1617 1724 1.43e-2 SMART
low complexity region 1892 1906 N/A INTRINSIC
low complexity region 2037 2049 N/A INTRINSIC
Predicted Effect
SMART Domains Protein: ENSMUSP00000113360
Gene: ENSMUSG00000047248
AA Change: Y61C

DomainStartEndE-ValueType
C2 61 199 2.36e1 SMART
C2 327 436 3.73e0 SMART
C2 526 666 1.47e1 SMART
C2 719 858 1.63e1 SMART
C2 1154 1261 1.43e-2 SMART
low complexity region 1429 1443 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000133464
SMART Domains Protein: ENSMUSP00000118864
Gene: ENSMUSG00000047248

DomainStartEndE-ValueType
low complexity region 2 19 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that functions as a regulator of centriole elongation. Studies of the orthologous mouse protein show that it promotes centriolar distal appendage assembly and is also required for the recruitment of other ciliogenic proteins, including intraflagellar transport proteins. Mutations in this gene cause orofaciodigital syndrome XIV (OFD14), a ciliopathy resulting in malformations of the oral cavity, face and digits. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Nov 2014]
PHENOTYPE: Homozygotes inactivating allele are embryonic lethal with pericardial edema and twisted body axis, abnormal patterning of brain and open neural tube defect. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 64 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
6430550D23Rik A G 2: 155,845,798 (GRCm39) Y20H probably benign Het
Arid5b A G 10: 67,964,628 (GRCm39) F348L possibly damaging Het
Bms1 C A 6: 118,375,044 (GRCm39) A777S probably damaging Het
Caprin2 A T 6: 148,744,337 (GRCm39) Y1029* probably null Het
Casp1 A T 9: 5,303,128 (GRCm39) D194V probably benign Het
Crkl A G 16: 17,286,822 (GRCm39) E126G probably damaging Het
Crp A T 1: 172,526,413 (GRCm39) D166V probably damaging Het
Dnah10 A C 5: 124,818,989 (GRCm39) D425A possibly damaging Het
Dnah11 A T 12: 117,951,095 (GRCm39) L3071Q probably damaging Het
Dnah9 T A 11: 65,924,751 (GRCm39) I2168F possibly damaging Het
Elp3 T A 14: 65,788,920 (GRCm39) I388F probably damaging Het
Espn C A 4: 152,217,380 (GRCm39) probably null Het
Fbrsl1 G T 5: 110,511,250 (GRCm39) F504L probably benign Het
Fzd9 A C 5: 135,279,540 (GRCm39) M115R probably damaging Het
Git2 A T 5: 114,899,682 (GRCm39) Y224N possibly damaging Het
Gm9195 A T 14: 72,695,786 (GRCm39) Y1415* probably null Het
Gnpat T A 8: 125,610,179 (GRCm39) L454Q probably damaging Het
Grm5 C T 7: 87,723,440 (GRCm39) P577S probably damaging Het
Hfm1 T C 5: 107,041,334 (GRCm39) N683S probably benign Het
Hps4 G A 5: 112,525,905 (GRCm39) S642N possibly damaging Het
Leng8 C A 7: 4,145,247 (GRCm39) P216T probably damaging Het
Letm2 C A 8: 26,084,102 (GRCm39) R43L probably benign Het
Lims2 A T 18: 32,090,943 (GRCm39) Y309F probably benign Het
Llgl1 T C 11: 60,600,956 (GRCm39) probably null Het
Ltn1 A T 16: 87,194,089 (GRCm39) D1417E probably damaging Het
Map4k4 T A 1: 40,029,261 (GRCm39) N345K unknown Het
Mapre2 T C 18: 23,937,236 (GRCm39) I26T probably benign Het
Nfe2 A G 15: 103,159,636 (GRCm39) probably benign Het
Nlgn3 T C X: 100,352,390 (GRCm39) V179A probably damaging Het
Ntrk1 A G 3: 87,695,622 (GRCm39) probably null Het
Or51b6b T A 7: 103,309,950 (GRCm39) Y169F possibly damaging Het
Or52e18 A G 7: 104,609,651 (GRCm39) F96S probably damaging Het
Or5h19 T C 16: 58,856,789 (GRCm39) N104D probably benign Het
Otud7b G T 3: 96,047,771 (GRCm39) Q43H probably damaging Het
Pcdhb5 T C 18: 37,453,695 (GRCm39) V25A probably benign Het
Pcolce2 A G 9: 95,560,439 (GRCm39) T163A probably benign Het
Pdgfra T A 5: 75,324,262 (GRCm39) V39E possibly damaging Het
Pdgfrb T A 18: 61,194,300 (GRCm39) W26R probably null Het
Pigp T A 16: 94,165,522 (GRCm39) *206Y probably null Het
Pip5kl1 G T 2: 32,468,211 (GRCm39) G126C probably benign Het
Plekhg2 G T 7: 28,064,215 (GRCm39) T442K probably benign Het
Prmt5 A T 14: 54,748,674 (GRCm39) S375T possibly damaging Het
Rnf213 T A 11: 119,340,943 (GRCm39) M3529K Het
Ror2 C A 13: 53,265,374 (GRCm39) D573Y probably damaging Het
Shank1 A G 7: 43,962,579 (GRCm39) T98A unknown Het
Shcbp1 A T 8: 4,798,800 (GRCm39) I373K possibly damaging Het
Slc25a42 A G 8: 70,642,736 (GRCm39) S64P probably damaging Het
Smco3 T A 6: 136,808,410 (GRCm39) I155F probably damaging Het
Snx4 C A 16: 33,087,161 (GRCm39) S102* probably null Het
Snx4 T A 16: 33,108,069 (GRCm39) S288T probably benign Het
Socs4 A G 14: 47,527,716 (GRCm39) N217S probably benign Het
Tatdn2 G A 6: 113,679,683 (GRCm39) probably null Het
Tmprss2 A G 16: 97,379,821 (GRCm39) Y160H probably damaging Het
Trim37 T C 11: 87,036,393 (GRCm39) I158T possibly damaging Het
Trip11 C T 12: 101,811,990 (GRCm39) probably null Het
Ubr3 G A 2: 69,727,990 (GRCm39) A118T probably benign Het
Ubxn7 T C 16: 32,178,895 (GRCm39) probably null Het
Unc5cl C T 17: 48,770,658 (GRCm39) H369Y probably damaging Het
Unc5d A T 8: 29,250,877 (GRCm39) N263K probably damaging Het
Vmn2r59 A G 7: 41,661,907 (GRCm39) I636T possibly damaging Het
Vps13d G T 4: 144,875,792 (GRCm39) Q1578K Het
Wnk2 T C 13: 49,224,274 (GRCm39) D1171G probably damaging Het
Zfpm2 A G 15: 40,966,470 (GRCm39) Y985C probably damaging Het
Zpbp2 A T 11: 98,443,398 (GRCm39) N77I probably damaging Het
Other mutations in C2cd3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00540:C2cd3 APN 7 100,040,335 (GRCm39) missense probably benign 0.14
IGL01420:C2cd3 APN 7 100,104,065 (GRCm39) missense probably benign 0.35
IGL01775:C2cd3 APN 7 100,092,638 (GRCm39) missense probably damaging 1.00
IGL01832:C2cd3 APN 7 100,076,421 (GRCm39) missense possibly damaging 0.94
IGL01883:C2cd3 APN 7 100,023,693 (GRCm39) missense possibly damaging 0.80
IGL02664:C2cd3 APN 7 100,068,922 (GRCm39) missense possibly damaging 0.67
IGL02697:C2cd3 APN 7 100,076,376 (GRCm39) unclassified probably benign
IGL02852:C2cd3 APN 7 100,079,396 (GRCm39) missense probably damaging 1.00
IGL03158:C2cd3 APN 7 100,023,683 (GRCm39) missense probably damaging 1.00
R0012:C2cd3 UTSW 7 100,067,729 (GRCm39) missense possibly damaging 0.52
R0012:C2cd3 UTSW 7 100,067,729 (GRCm39) missense possibly damaging 0.52
R0013:C2cd3 UTSW 7 100,065,269 (GRCm39) missense probably damaging 1.00
R0013:C2cd3 UTSW 7 100,065,269 (GRCm39) missense probably damaging 1.00
R0032:C2cd3 UTSW 7 100,093,652 (GRCm39) unclassified probably benign
R0032:C2cd3 UTSW 7 100,093,652 (GRCm39) unclassified probably benign
R0124:C2cd3 UTSW 7 100,118,725 (GRCm39) missense probably benign
R0387:C2cd3 UTSW 7 100,071,714 (GRCm39) splice site probably benign
R0522:C2cd3 UTSW 7 100,044,429 (GRCm39) missense probably benign 0.14
R1124:C2cd3 UTSW 7 100,071,888 (GRCm39) missense probably benign 0.00
R1484:C2cd3 UTSW 7 100,089,397 (GRCm39) missense probably damaging 1.00
R1533:C2cd3 UTSW 7 100,055,284 (GRCm39) missense possibly damaging 0.54
R1631:C2cd3 UTSW 7 100,021,704 (GRCm39) critical splice donor site probably null
R1875:C2cd3 UTSW 7 100,056,232 (GRCm39) missense possibly damaging 0.89
R2059:C2cd3 UTSW 7 100,104,700 (GRCm39) unclassified probably benign
R2060:C2cd3 UTSW 7 100,104,155 (GRCm39) missense probably damaging 1.00
R2348:C2cd3 UTSW 7 100,062,573 (GRCm39) missense probably damaging 1.00
R3103:C2cd3 UTSW 7 100,044,459 (GRCm39) missense possibly damaging 0.47
R3405:C2cd3 UTSW 7 100,039,373 (GRCm39) missense probably benign 0.01
R3687:C2cd3 UTSW 7 100,085,040 (GRCm39) missense probably benign 0.28
R3775:C2cd3 UTSW 7 100,081,205 (GRCm39) missense probably damaging 1.00
R3854:C2cd3 UTSW 7 100,103,808 (GRCm39) critical splice acceptor site probably null
R4359:C2cd3 UTSW 7 100,090,296 (GRCm39) missense probably damaging 1.00
R4403:C2cd3 UTSW 7 100,081,306 (GRCm39) missense probably damaging 1.00
R4446:C2cd3 UTSW 7 100,023,684 (GRCm39) missense probably damaging 1.00
R4646:C2cd3 UTSW 7 100,021,657 (GRCm39) unclassified probably benign
R4705:C2cd3 UTSW 7 100,044,395 (GRCm39) missense possibly damaging 0.77
R4770:C2cd3 UTSW 7 100,092,642 (GRCm39) missense probably damaging 1.00
R4777:C2cd3 UTSW 7 100,065,539 (GRCm39) missense possibly damaging 0.46
R4816:C2cd3 UTSW 7 100,040,226 (GRCm39) missense probably benign 0.01
R4842:C2cd3 UTSW 7 100,065,397 (GRCm39) missense probably benign 0.00
R4858:C2cd3 UTSW 7 100,104,160 (GRCm39) missense probably damaging 1.00
R4871:C2cd3 UTSW 7 100,062,581 (GRCm39) missense possibly damaging 0.79
R4898:C2cd3 UTSW 7 100,055,166 (GRCm39) missense probably damaging 1.00
R5026:C2cd3 UTSW 7 100,109,049 (GRCm39) missense possibly damaging 0.52
R5112:C2cd3 UTSW 7 100,092,692 (GRCm39) missense possibly damaging 0.91
R5242:C2cd3 UTSW 7 100,039,373 (GRCm39) missense probably benign 0.01
R5538:C2cd3 UTSW 7 100,104,700 (GRCm39) critical splice donor site probably null
R5861:C2cd3 UTSW 7 100,093,682 (GRCm39) unclassified probably benign
R6110:C2cd3 UTSW 7 100,090,283 (GRCm39) missense probably damaging 1.00
R6326:C2cd3 UTSW 7 100,065,635 (GRCm39) missense probably benign 0.02
R6429:C2cd3 UTSW 7 100,081,298 (GRCm39) missense probably damaging 1.00
R6610:C2cd3 UTSW 7 100,104,505 (GRCm39) missense probably benign
R6613:C2cd3 UTSW 7 100,044,448 (GRCm39) missense possibly damaging 0.87
R6631:C2cd3 UTSW 7 100,067,747 (GRCm39) missense probably damaging 1.00
R6787:C2cd3 UTSW 7 100,104,553 (GRCm39) missense probably benign
R6837:C2cd3 UTSW 7 100,097,953 (GRCm39) missense probably damaging 1.00
R6849:C2cd3 UTSW 7 100,056,134 (GRCm39) missense probably damaging 1.00
R6860:C2cd3 UTSW 7 100,039,448 (GRCm39) missense probably benign 0.28
R6929:C2cd3 UTSW 7 100,100,826 (GRCm39) missense probably damaging 1.00
R7026:C2cd3 UTSW 7 100,081,299 (GRCm39) missense probably damaging 1.00
R7088:C2cd3 UTSW 7 100,065,388 (GRCm39) missense
R7174:C2cd3 UTSW 7 100,081,405 (GRCm39) missense
R7241:C2cd3 UTSW 7 100,056,257 (GRCm39) missense
R7335:C2cd3 UTSW 7 100,071,810 (GRCm39) missense
R7357:C2cd3 UTSW 7 100,079,310 (GRCm39) missense
R7493:C2cd3 UTSW 7 100,076,433 (GRCm39) missense
R7567:C2cd3 UTSW 7 100,080,022 (GRCm39) missense
R7573:C2cd3 UTSW 7 100,068,914 (GRCm39) missense
R7869:C2cd3 UTSW 7 100,118,698 (GRCm39) missense probably damaging 0.99
R7999:C2cd3 UTSW 7 100,109,096 (GRCm39) critical splice donor site probably null
R8134:C2cd3 UTSW 7 100,067,711 (GRCm39) missense
R8369:C2cd3 UTSW 7 100,044,465 (GRCm39) missense probably benign 0.03
R8372:C2cd3 UTSW 7 100,104,487 (GRCm39) nonsense probably null
R8753:C2cd3 UTSW 7 100,049,024 (GRCm39) critical splice donor site probably null
R8893:C2cd3 UTSW 7 100,104,004 (GRCm39) missense probably benign
R8905:C2cd3 UTSW 7 100,074,132 (GRCm39) critical splice donor site probably null
R8945:C2cd3 UTSW 7 100,040,286 (GRCm39) missense possibly damaging 0.88
R8970:C2cd3 UTSW 7 100,068,971 (GRCm39) missense
R9000:C2cd3 UTSW 7 100,065,281 (GRCm39) missense
R9064:C2cd3 UTSW 7 100,059,608 (GRCm39) missense
R9072:C2cd3 UTSW 7 100,040,291 (GRCm39) missense probably benign 0.07
R9126:C2cd3 UTSW 7 100,081,430 (GRCm39) missense
R9160:C2cd3 UTSW 7 100,075,236 (GRCm39) missense
R9258:C2cd3 UTSW 7 100,098,026 (GRCm39) missense
R9295:C2cd3 UTSW 7 100,081,734 (GRCm39) missense
R9411:C2cd3 UTSW 7 100,065,704 (GRCm39) missense
R9420:C2cd3 UTSW 7 100,065,262 (GRCm39) missense
R9589:C2cd3 UTSW 7 100,081,756 (GRCm39) missense
R9628:C2cd3 UTSW 7 100,097,961 (GRCm39) missense
R9629:C2cd3 UTSW 7 100,029,249 (GRCm39) missense probably damaging 1.00
R9681:C2cd3 UTSW 7 100,023,662 (GRCm39) missense probably benign 0.32
R9775:C2cd3 UTSW 7 100,076,458 (GRCm39) missense
X0002:C2cd3 UTSW 7 100,089,442 (GRCm39) missense possibly damaging 0.50
Predicted Primers PCR Primer
(F):5'- GCTCTGCTGAACCTTCTGTTAAG -3'
(R):5'- GCTAGCTGTTTCTTAGAAGTGC -3'

Sequencing Primer
(F):5'- GCTGAACCTTCTGTTAAGTCCTTGG -3'
(R):5'- TCTTAGAAGTGCTCTGAGGAAGCC -3'
Posted On 2022-03-25