Mutagenetix > Incidental Mutation

Incidental Mutation 'R9244:Harbi1'

701132

Institutional Source

Beutler Lab

Gene Symbol

Harbi1

Ensembl Gene

ENSMUSG00000027243

Gene Name

harbinger transposase derived 1

Synonyms

D230010M03Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.094) question?

Stock #

R9244 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

91541197-91551890 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 91543040 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 167 (N167S)

Ref Sequence

ENSEMBL: ENSMUSP00000088098 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028678] [ENSMUST00000076803] [ENSMUST00000090608] [ENSMUST00000111322] [ENSMUST00000128140] [ENSMUST00000140183] [ENSMUST00000142692]

AlphaFold

Q8BR93

Predicted Effect

probably benign
Transcript: ENSMUST00000028678

SMART Domains

Protein: ENSMUSP00000028678
Gene: ENSMUSG00000027244

Domain	Start	End	E-Value	Type
Pfam:ATG13	77	195	1.5e-10	PFAM
low complexity region	252	269	N/A	INTRINSIC
low complexity region	423	442	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000076803

SMART Domains

Protein: ENSMUSP00000076081
Gene: ENSMUSG00000027244

Domain	Start	End	E-Value	Type
Pfam:ATG13	17	195	1.1e-35	PFAM
low complexity region	386	405	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000090608
AA Change: N167S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000088098
Gene: ENSMUSG00000027243
AA Change: N167S

Domain	Start	End	E-Value	Type
Pfam:Plant_tran	122	309	6.6e-8	PFAM
Pfam:DDE_Tnp_4	148	300	1.7e-40	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000111322
AA Change: N167S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000106954
Gene: ENSMUSG00000027243
AA Change: N167S

Domain	Start	End	E-Value	Type
Pfam:DDE_Tnp_4	148	226	1.5e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000128140

Predicted Effect

probably damaging
Transcript: ENSMUST00000140183
AA Change: N167S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000142692
AA Change: N167S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000121420
Gene: ENSMUSG00000027243
AA Change: N167S

Domain	Start	End	E-Value	Type
Pfam:DDE_Tnp_4	148	234	1.1e-17	PFAM

Meta Mutation Damage Score

0.8692

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (55/55)

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	A	G	11: 9,241,577 (GRCm39)	I1147V	probably benign	Het
Adcy10	A	G	1: 165,370,679 (GRCm39)	T653A	probably benign	Het
App	A	G	16: 84,759,629 (GRCm39)	I656T	probably damaging	Het
Arnt	T	A	3: 95,397,879 (GRCm39)	I574N	possibly damaging	Het
Cdc42	T	C	4: 137,056,391 (GRCm39)	T75A	probably benign	Het
Cdh23	C	A	10: 60,249,442 (GRCm39)	K822N	possibly damaging	Het
Chrnb3	T	A	8: 27,884,594 (GRCm39)	L444I	unknown	Het
Ctnnbl1	G	T	2: 157,678,583 (GRCm39)	K395N	possibly damaging	Het
Dmxl1	T	A	18: 50,026,316 (GRCm39)	I1808K	probably benign	Het
Dnajb8	C	A	6: 88,199,884 (GRCm39)	P140Q	probably damaging	Het
Dock5	G	A	14: 67,996,563 (GRCm39)	R1727W	probably damaging	Het
Dscam	G	A	16: 96,486,429 (GRCm39)	T1082I	possibly damaging	Het
Eaf1	T	C	14: 31,219,766 (GRCm39)		probably benign	Het
Elapor2	A	G	5: 9,460,700 (GRCm39)	Y207C	probably damaging	Het
Enpp3	T	C	10: 24,654,689 (GRCm39)	D663G	probably damaging	Het
Epha5	A	G	5: 84,265,441 (GRCm39)	V451A	probably benign	Het
Erap1	G	A	13: 74,821,903 (GRCm39)		probably null	Het
Esco2	A	G	14: 66,059,088 (GRCm39)	W530R	probably damaging	Het
Fhip1b	A	G	7: 105,038,870 (GRCm39)	V123A	possibly damaging	Het
Fhod3	T	C	18: 25,248,922 (GRCm39)	I1367T	probably damaging	Het
Fryl	T	C	5: 73,348,862 (GRCm39)		probably benign	Het
Get1	A	G	16: 95,955,383 (GRCm39)	T147A	probably benign	Het
Gm42669	A	G	5: 107,656,370 (GRCm39)	T295A	possibly damaging	Het
Hfm1	A	C	5: 107,022,766 (GRCm39)	N945K	probably damaging	Het
Hook3	A	G	8: 26,561,084 (GRCm39)		probably null	Het
Htr1f	G	T	16: 64,746,857 (GRCm39)	T145K	probably benign	Het
Igf2bp2	A	C	16: 21,886,901 (GRCm39)	S453A	possibly damaging	Het
Ipo4	A	T	14: 55,871,799 (GRCm39)	W116R	probably damaging	Het
Jak1	T	C	4: 101,015,040 (GRCm39)	H917R	probably benign	Het
Klrb1b	A	T	6: 128,792,245 (GRCm39)	C189*	probably null	Het
Lrrn2	A	G	1: 132,865,058 (GRCm39)	Y41C	probably damaging	Het
Lrrn2	T	C	1: 132,865,237 (GRCm39)	S101P	probably damaging	Het
Mcmdc2	C	T	1: 9,985,835 (GRCm39)	T127I	probably damaging	Het
Mtch1	C	A	17: 29,566,626 (GRCm39)	A46S	unknown	Het
Ndufb5	C	A	3: 32,795,906 (GRCm39)	Q33K	probably null	Het
Nufip2	T	C	11: 77,583,475 (GRCm39)	V463A	probably damaging	Het
Ogfr	GGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGG	GGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGG	2: 180,237,059 (GRCm39)		probably benign	Het
Or2r3	T	A	6: 42,448,537 (GRCm39)	I192F	possibly damaging	Het
Or5p62	A	G	7: 107,771,852 (GRCm39)	I33T	probably benign	Het
Or6d12	G	A	6: 116,492,782 (GRCm39)	V15I	probably benign	Het
Or8j3c	A	T	2: 86,253,423 (GRCm39)	V199E	probably damaging	Het
Pira13	T	C	7: 3,825,226 (GRCm39)	D472G	unknown	Het
Ppip5k1	A	C	2: 121,164,932 (GRCm39)	S972A	probably benign	Het
Prl8a2	A	T	13: 27,534,982 (GRCm39)	M86L	probably benign	Het
Prorsd1	T	C	11: 29,463,271 (GRCm39)	I164V	probably benign	Het
Ptgs1	A	G	2: 36,130,724 (GRCm39)	T208A	probably damaging	Het
Ptpn3	A	T	4: 57,254,915 (GRCm39)		probably null	Het
Reln	T	C	5: 22,120,151 (GRCm39)	R2834G	probably damaging	Het
Shc4	G	T	2: 125,497,589 (GRCm39)	Y373*	probably null	Het
Skor1	A	T	9: 63,049,524 (GRCm39)		probably null	Het
Slc9a4	T	C	1: 40,658,249 (GRCm39)	S591P	probably damaging	Het
Stat2	A	G	10: 128,118,634 (GRCm39)	E389G	possibly damaging	Het
Trav14n-3	C	A	14: 53,608,004 (GRCm39)	D111E	probably damaging	Het
Unc5c	A	G	3: 141,533,370 (GRCm39)	S873G	probably benign	Het
Vmn1r210	T	C	13: 23,012,089 (GRCm39)	I66V	probably benign	Het
Vmn2r117	T	A	17: 23,696,589 (GRCm39)	I273F	probably damaging	Het
Vmn2r95	T	A	17: 18,672,189 (GRCm39)	M714K	possibly damaging	Het
Zfp235	A	G	7: 23,839,919 (GRCm39)	T113A	probably benign	Het
Zranb1	T	G	7: 132,585,640 (GRCm39)	L696R	probably damaging	Het

Other mutations in Harbi1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00474:Harbi1	APN	2	91,542,971 (GRCm39)	missense	probably damaging	1.00
R0670:Harbi1	UTSW	2	91,542,880 (GRCm39)	missense	probably damaging	1.00
R0673:Harbi1	UTSW	2	91,542,880 (GRCm39)	missense	probably damaging	1.00
R3788:Harbi1	UTSW	2	91,550,952 (GRCm39)	missense	probably benign	0.10
R4296:Harbi1	UTSW	2	91,543,100 (GRCm39)	missense	possibly damaging	0.49
R6545:Harbi1	UTSW	2	91,542,640 (GRCm39)	missense	probably damaging	0.99
R7207:Harbi1	UTSW	2	91,542,790 (GRCm39)	missense	probably damaging	1.00
R7324:Harbi1	UTSW	2	91,551,044 (GRCm39)	missense	probably benign	0.16
R7728:Harbi1	UTSW	2	91,542,626 (GRCm39)	missense	possibly damaging	0.80
R8218:Harbi1	UTSW	2	91,543,237 (GRCm39)	missense	probably benign
R9095:Harbi1	UTSW	2	91,542,980 (GRCm39)	missense	probably damaging	0.96
R9562:Harbi1	UTSW	2	91,542,698 (GRCm39)	nonsense	probably null
R9604:Harbi1	UTSW	2	91,542,689 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TGCAATTGGAATTAGCCAGGC -3'
(R):5'- TACCAAGAAGCCAGCTATCTTTG -3'

Sequencing Primer
(F):5'- GAATTAGCCAGGCCTCTATGAGTC -3'
(R):5'- GAAGCCAGCTATCTTTGGGCATC -3'

Posted On

2022-03-25