Incidental Mutation 'R9257:Nup214'
ID 701919
Institutional Source Beutler Lab
Gene Symbol Nup214
Ensembl Gene ENSMUSG00000001855
Gene Name nucleoporin 214
Synonyms CAN, D2H9S46E
MMRRC Submission
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R9257 (G1)
Quality Score 216.009
Status Not validated
Chromosome 2
Chromosomal Location 31864446-31943204 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 31923347 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Glycine at position 1292 (V1292G)
Ref Sequence ENSEMBL: ENSMUSP00000066492 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000065398] [ENSMUST00000138012]
AlphaFold Q80U93
Predicted Effect possibly damaging
Transcript: ENSMUST00000065398
AA Change: V1292G

PolyPhen 2 Score 0.915 (Sensitivity: 0.81; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000066492
Gene: ENSMUSG00000001855
AA Change: V1292G

DomainStartEndE-ValueType
WD40 138 178 2.48e0 SMART
WD40 182 220 2.67e-1 SMART
low complexity region 428 441 N/A INTRINSIC
low complexity region 449 467 N/A INTRINSIC
low complexity region 474 493 N/A INTRINSIC
low complexity region 529 546 N/A INTRINSIC
low complexity region 620 640 N/A INTRINSIC
low complexity region 645 656 N/A INTRINSIC
coiled coil region 853 881 N/A INTRINSIC
internal_repeat_1 969 993 1.13e-9 PROSPERO
internal_repeat_1 985 1009 1.13e-9 PROSPERO
low complexity region 1011 1026 N/A INTRINSIC
low complexity region 1049 1064 N/A INTRINSIC
low complexity region 1093 1111 N/A INTRINSIC
low complexity region 1201 1215 N/A INTRINSIC
low complexity region 1226 1248 N/A INTRINSIC
low complexity region 1279 1296 N/A INTRINSIC
low complexity region 1300 1311 N/A INTRINSIC
low complexity region 1391 1426 N/A INTRINSIC
low complexity region 1438 1454 N/A INTRINSIC
low complexity region 1458 1505 N/A INTRINSIC
low complexity region 1559 1573 N/A INTRINSIC
low complexity region 1611 1642 N/A INTRINSIC
low complexity region 1658 1670 N/A INTRINSIC
low complexity region 1686 1715 N/A INTRINSIC
low complexity region 1733 1748 N/A INTRINSIC
low complexity region 1771 1783 N/A INTRINSIC
low complexity region 1799 1832 N/A INTRINSIC
low complexity region 1853 1872 N/A INTRINSIC
low complexity region 1877 1886 N/A INTRINSIC
low complexity region 1898 1910 N/A INTRINSIC
low complexity region 1925 1934 N/A INTRINSIC
low complexity region 1969 1995 N/A INTRINSIC
low complexity region 2007 2032 N/A INTRINSIC
low complexity region 2048 2076 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000138012
SMART Domains Protein: ENSMUSP00000115665
Gene: ENSMUSG00000001855

DomainStartEndE-ValueType
low complexity region 54 68 N/A INTRINSIC
low complexity region 106 137 N/A INTRINSIC
low complexity region 153 165 N/A INTRINSIC
low complexity region 181 210 N/A INTRINSIC
low complexity region 228 243 N/A INTRINSIC
low complexity region 266 278 N/A INTRINSIC
low complexity region 294 327 N/A INTRINSIC
low complexity region 348 368 N/A INTRINSIC
low complexity region 373 382 N/A INTRINSIC
low complexity region 394 406 N/A INTRINSIC
low complexity region 421 430 N/A INTRINSIC
low complexity region 465 491 N/A INTRINSIC
low complexity region 503 528 N/A INTRINSIC
low complexity region 544 572 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.5%
  • 20x: 97.9%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The nuclear pore complex is a massive structure that extends across the nuclear envelope, forming a gateway that regulates the flow of macromolecules between the nucleus and the cytoplasm. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells. This gene is a member of the FG-repeat-containing nucleoporins. The protein encoded by this gene is localized to the cytoplasmic face of the nuclear pore complex where it is required for proper cell cycle progression and nucleocytoplasmic transport. The 3' portion of this gene forms a fusion gene with the DEK gene on chromosome 6 in a t(6,9) translocation associated with acute myeloid leukemia and myelodysplastic syndrome. Alternative splicing of this gene results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2015]
PHENOTYPE: Embryos homozygous for a null mutation die between 4.0 and 4.5 dpc, following depletion of maternally-derived gene product. In vitro, cultured 3.5-dpc mutant embryos arrest in the G2 phase, and show blastocoel contraction with defects in NLS-mediated protein import and polyadenylated RNA export. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 68 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4921509C19Rik T A 2: 151,315,627 (GRCm39) D17V probably benign Het
9130401M01Rik A C 15: 57,892,414 (GRCm39) H128Q possibly damaging Het
Abcd2 T C 15: 91,075,315 (GRCm39) Y166C possibly damaging Het
Adamtsl4 C A 3: 95,588,575 (GRCm39) V546F probably damaging Het
Als2cl T A 9: 110,723,755 (GRCm39) V717E probably damaging Het
Atm A G 9: 53,407,150 (GRCm39) probably null Het
Atp2c1 C A 9: 105,291,851 (GRCm39) E904* probably null Het
Ccdc88c G A 12: 100,889,474 (GRCm39) S1523F possibly damaging Het
Cds1 A T 5: 101,963,751 (GRCm39) I357F probably benign Het
Cilp T A 9: 65,174,451 (GRCm39) V13D possibly damaging Het
Copz2 A G 11: 96,748,386 (GRCm39) D180G possibly damaging Het
Cpsf1 C T 15: 76,484,992 (GRCm39) E546K probably benign Het
Ctsm T C 13: 61,684,413 (GRCm39) N320D probably damaging Het
Fat3 G A 9: 15,907,863 (GRCm39) T2713I probably benign Het
Fcrl5 T A 3: 87,343,195 (GRCm39) S2T probably benign Het
Fgfr4 T C 13: 55,315,974 (GRCm39) S796P unknown Het
Flrt3 A G 2: 140,502,159 (GRCm39) F490L probably benign Het
Fras1 A T 5: 96,910,359 (GRCm39) I3263F probably damaging Het
Hydin A T 8: 111,301,648 (GRCm39) D3793V probably damaging Het
Kif5c T A 2: 49,590,604 (GRCm39) L269* probably null Het
Klhl32 A G 4: 24,649,608 (GRCm39) V396A probably benign Het
Krt1c C T 15: 101,724,926 (GRCm39) R228Q probably benign Het
Lcn9 T C 2: 25,714,784 (GRCm39) probably null Het
Lingo4 A C 3: 94,310,676 (GRCm39) D538A probably benign Het
Lonp1 G T 17: 56,927,516 (GRCm39) Y299* probably null Het
Mettl16 T A 11: 74,708,127 (GRCm39) V442D possibly damaging Het
Mettl25b G T 3: 87,831,768 (GRCm39) Q397K probably benign Het
Mis18bp1 A G 12: 65,180,631 (GRCm39) V950A probably benign Het
Mndal A T 1: 173,690,274 (GRCm39) V352E probably damaging Het
Mrpl55 T C 11: 59,096,578 (GRCm39) V117A probably benign Het
Muc6 T A 7: 141,226,738 (GRCm39) S1430C unknown Het
Myh11 C A 16: 14,087,120 (GRCm39) G119C Het
Myorg T C 4: 41,499,030 (GRCm39) D200G probably benign Het
Neu1 A G 17: 35,150,396 (GRCm39) D5G probably benign Het
Nrcam T A 12: 44,610,837 (GRCm39) D512E probably benign Het
Nwd1 T A 8: 73,397,566 (GRCm39) L602M probably damaging Het
Or6c3b C A 10: 129,527,003 (GRCm39) L302F probably benign Het
Pck2 G T 14: 55,782,702 (GRCm39) G379W probably damaging Het
Per2 C T 1: 91,376,445 (GRCm39) V143M probably damaging Het
Pfkl A T 10: 77,825,489 (GRCm39) Y634N probably damaging Het
Phlpp1 A G 1: 106,100,281 (GRCm39) D183G possibly damaging Het
Pkdrej T A 15: 85,700,098 (GRCm39) Y1946F probably damaging Het
Plxna4 C T 6: 32,139,018 (GRCm39) D1717N probably damaging Het
Ppp1r14bl G T 1: 23,141,275 (GRCm39) T13N probably benign Het
Pramel23 T A 4: 143,425,685 (GRCm39) D86V probably damaging Het
Prdm16 A T 4: 154,422,155 (GRCm39) V879E probably damaging Het
Prr23a3 T C 9: 98,747,298 (GRCm39) V84A probably benign Het
Ptp4a1 A G 1: 30,985,346 (GRCm39) probably benign Het
Rhbdf1 T C 11: 32,160,754 (GRCm39) H634R probably benign Het
Rmi2 T C 16: 10,653,089 (GRCm39) S46P probably benign Het
Rsf1 A T 7: 97,334,918 (GRCm39) E1350D Het
Slc6a6 T A 6: 91,716,952 (GRCm39) F276Y possibly damaging Het
Sppl3 A G 5: 115,221,532 (GRCm39) Y120C probably benign Het
Stard13 G T 5: 150,985,956 (GRCm39) A518E probably benign Het
Taf2 A T 15: 54,929,409 (GRCm39) V49E possibly damaging Het
Tas2r140 T A 6: 40,468,592 (GRCm39) W141R probably damaging Het
Tlx2 T A 6: 83,047,035 (GRCm39) H9L unknown Het
Tmco1 C T 1: 167,136,132 (GRCm39) probably benign Het
Tmem132d G A 5: 127,861,491 (GRCm39) Q877* probably null Het
Unc5d A T 8: 29,215,174 (GRCm39) probably null Het
Upp1 A T 11: 9,075,661 (GRCm39) T4S probably benign Het
Uros A T 7: 133,292,853 (GRCm39) I146N probably damaging Het
Vsig10 A T 5: 117,463,131 (GRCm39) D119V probably benign Het
Washc2 C A 6: 116,193,069 (GRCm39) Y138* probably null Het
Ywhah T A 5: 33,184,095 (GRCm39) D99E probably benign Het
Zdbf2 G A 1: 63,345,400 (GRCm39) G1260R probably damaging Het
Zfp663 T C 2: 165,195,974 (GRCm39) T82A probably benign Het
Zfp831 T A 2: 174,488,156 (GRCm39) C944S possibly damaging Het
Other mutations in Nup214
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00490:Nup214 APN 2 31,923,991 (GRCm39) missense probably damaging 1.00
IGL00649:Nup214 APN 2 31,896,733 (GRCm39) missense probably benign 0.27
IGL01149:Nup214 APN 2 31,924,712 (GRCm39) missense probably damaging 1.00
IGL01360:Nup214 APN 2 31,928,190 (GRCm39) unclassified probably benign
IGL01409:Nup214 APN 2 31,916,943 (GRCm39) splice site probably null
IGL01530:Nup214 APN 2 31,923,733 (GRCm39) missense probably benign
IGL01554:Nup214 APN 2 31,941,084 (GRCm39) nonsense probably null
IGL01944:Nup214 APN 2 31,924,971 (GRCm39) nonsense probably null
IGL02296:Nup214 APN 2 31,878,200 (GRCm39) missense possibly damaging 0.65
IGL02563:Nup214 APN 2 31,867,872 (GRCm39) missense probably damaging 1.00
IGL02688:Nup214 APN 2 31,921,287 (GRCm39) missense probably benign
IGL02858:Nup214 APN 2 31,900,384 (GRCm39) splice site probably benign
IGL02953:Nup214 APN 2 31,878,241 (GRCm39) missense possibly damaging 0.87
IGL03090:Nup214 APN 2 31,908,254 (GRCm39) missense probably benign 0.01
IGL03124:Nup214 APN 2 31,886,452 (GRCm39) missense probably benign 0.27
IGL03225:Nup214 APN 2 31,924,423 (GRCm39) missense probably damaging 1.00
IGL03375:Nup214 APN 2 31,900,233 (GRCm39) missense probably damaging 0.97
Des_moines UTSW 2 31,870,596 (GRCm39) splice site probably null
ANU74:Nup214 UTSW 2 31,924,978 (GRCm39) missense probably damaging 0.99
R0035:Nup214 UTSW 2 31,880,379 (GRCm39) splice site probably null
R0243:Nup214 UTSW 2 31,888,069 (GRCm39) splice site probably benign
R0270:Nup214 UTSW 2 31,924,826 (GRCm39) missense probably damaging 0.96
R0358:Nup214 UTSW 2 31,894,312 (GRCm39) splice site probably null
R1168:Nup214 UTSW 2 31,915,313 (GRCm39) missense probably benign
R1242:Nup214 UTSW 2 31,867,782 (GRCm39) missense probably benign 0.00
R1481:Nup214 UTSW 2 31,924,478 (GRCm39) missense probably damaging 1.00
R1482:Nup214 UTSW 2 31,924,478 (GRCm39) missense probably damaging 1.00
R1579:Nup214 UTSW 2 31,924,478 (GRCm39) missense probably damaging 1.00
R1580:Nup214 UTSW 2 31,924,478 (GRCm39) missense probably damaging 1.00
R1581:Nup214 UTSW 2 31,924,478 (GRCm39) missense probably damaging 1.00
R1610:Nup214 UTSW 2 31,924,478 (GRCm39) missense probably damaging 1.00
R1894:Nup214 UTSW 2 31,886,392 (GRCm39) missense possibly damaging 0.66
R2146:Nup214 UTSW 2 31,924,478 (GRCm39) missense probably damaging 1.00
R2149:Nup214 UTSW 2 31,924,478 (GRCm39) missense probably damaging 1.00
R2293:Nup214 UTSW 2 31,916,887 (GRCm39) missense probably benign
R2924:Nup214 UTSW 2 31,888,015 (GRCm39) missense probably damaging 1.00
R2925:Nup214 UTSW 2 31,888,015 (GRCm39) missense probably damaging 1.00
R3037:Nup214 UTSW 2 31,866,632 (GRCm39) missense probably benign 0.00
R3426:Nup214 UTSW 2 31,923,415 (GRCm39) missense probably damaging 0.97
R3799:Nup214 UTSW 2 31,924,694 (GRCm39) missense probably damaging 1.00
R3843:Nup214 UTSW 2 31,941,112 (GRCm39) missense probably damaging 1.00
R4323:Nup214 UTSW 2 31,884,696 (GRCm39) missense probably benign
R4353:Nup214 UTSW 2 31,867,929 (GRCm39) critical splice donor site probably null
R4601:Nup214 UTSW 2 31,887,977 (GRCm39) missense probably benign 0.36
R4626:Nup214 UTSW 2 31,923,416 (GRCm39) missense possibly damaging 0.92
R4874:Nup214 UTSW 2 31,870,596 (GRCm39) splice site probably null
R4938:Nup214 UTSW 2 31,873,171 (GRCm39) missense probably benign 0.00
R4939:Nup214 UTSW 2 31,873,171 (GRCm39) missense probably benign 0.00
R5027:Nup214 UTSW 2 31,881,329 (GRCm39) missense probably damaging 1.00
R5358:Nup214 UTSW 2 31,907,158 (GRCm39) missense unknown
R5406:Nup214 UTSW 2 31,892,619 (GRCm39) missense probably damaging 0.96
R5507:Nup214 UTSW 2 31,878,188 (GRCm39) missense possibly damaging 0.87
R5695:Nup214 UTSW 2 31,924,385 (GRCm39) missense probably damaging 1.00
R5744:Nup214 UTSW 2 31,900,308 (GRCm39) missense probably damaging 0.97
R5908:Nup214 UTSW 2 31,881,353 (GRCm39) missense probably benign 0.03
R5967:Nup214 UTSW 2 31,869,790 (GRCm39) missense possibly damaging 0.52
R6140:Nup214 UTSW 2 31,941,808 (GRCm39) missense possibly damaging 0.92
R6243:Nup214 UTSW 2 31,892,944 (GRCm39) missense possibly damaging 0.81
R6488:Nup214 UTSW 2 31,881,384 (GRCm39) missense possibly damaging 0.93
R6934:Nup214 UTSW 2 31,872,683 (GRCm39) nonsense probably null
R6970:Nup214 UTSW 2 31,941,810 (GRCm39) missense probably damaging 1.00
R7028:Nup214 UTSW 2 31,924,168 (GRCm39) missense probably benign 0.22
R7114:Nup214 UTSW 2 31,915,256 (GRCm39) missense possibly damaging 0.83
R7120:Nup214 UTSW 2 31,941,054 (GRCm39) missense probably benign 0.07
R7249:Nup214 UTSW 2 31,878,245 (GRCm39) missense possibly damaging 0.92
R7821:Nup214 UTSW 2 31,916,917 (GRCm39) missense possibly damaging 0.83
R8026:Nup214 UTSW 2 31,923,362 (GRCm39) missense possibly damaging 0.55
R8264:Nup214 UTSW 2 31,884,738 (GRCm39) missense possibly damaging 0.79
R8284:Nup214 UTSW 2 31,886,458 (GRCm39) missense possibly damaging 0.83
R8356:Nup214 UTSW 2 31,929,372 (GRCm39) missense probably benign 0.05
R8397:Nup214 UTSW 2 31,880,266 (GRCm39) missense probably damaging 0.96
R8456:Nup214 UTSW 2 31,929,372 (GRCm39) missense probably benign 0.05
R8785:Nup214 UTSW 2 31,924,465 (GRCm39) missense probably damaging 0.97
R9291:Nup214 UTSW 2 31,867,806 (GRCm39) missense probably benign 0.00
R9376:Nup214 UTSW 2 31,924,244 (GRCm39) missense probably benign 0.00
R9408:Nup214 UTSW 2 31,937,523 (GRCm39) missense probably damaging 1.00
R9613:Nup214 UTSW 2 31,901,035 (GRCm39) missense possibly damaging 0.90
R9789:Nup214 UTSW 2 31,907,227 (GRCm39) missense possibly damaging 0.46
RF015:Nup214 UTSW 2 31,924,718 (GRCm39) missense probably benign 0.00
X0026:Nup214 UTSW 2 31,910,318 (GRCm39) missense possibly damaging 0.46
X0065:Nup214 UTSW 2 31,932,488 (GRCm39) missense probably damaging 1.00
Z1088:Nup214 UTSW 2 31,901,235 (GRCm39) missense probably benign 0.27
Z1176:Nup214 UTSW 2 31,924,237 (GRCm39) nonsense probably null
Z1176:Nup214 UTSW 2 31,900,270 (GRCm39) missense possibly damaging 0.66
Z1177:Nup214 UTSW 2 31,887,971 (GRCm39) missense possibly damaging 0.83
Predicted Primers PCR Primer
(F):5'- CTGACTGAAGAGAAAGATTGCCTG -3'
(R):5'- ATCCTCAGCTTGGCCAACAC -3'

Sequencing Primer
(F):5'- CCTGAGAAGGGCAATCAGTAC -3'
(R):5'- CTTGGCCAACACGCAGG -3'
Posted On 2022-03-25