Mutagenetix > Incidental Mutation

Incidental Mutation 'R9264:Ms4a20'

702455

Institutional Source

Beutler Lab

Gene Symbol

Ms4a20

Ensembl Gene

ENSMUSG00000024729

Gene Name

membrane-spanning 4-domains, subfamily A, member 20

Synonyms

1700017D01Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.068) question?

Stock #

R9264 (G1)

Quality Score

176.009

Status

Validated

Chromosome

Chromosomal Location

11074180-11108240 bp(-) (GRCm39)

Type of Mutation

start codon destroyed

DNA Base Change (assembly)

T to A at 11093830 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 1 (M1L)

Ref Sequence

ENSEMBL: ENSMUSP00000025635 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025635]

AlphaFold

G5E851

Predicted Effect

probably benign
Transcript: ENSMUST00000025635
AA Change: M1L

PolyPhen 2 Score 0.135 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000025635
Gene: ENSMUSG00000024729
AA Change: M1L

Domain	Start	End	E-Value	Type
Pfam:CD20	18	118	2.4e-8	PFAM
transmembrane domain	130	152	N/A	INTRINSIC
low complexity region	169	185	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (58/58)

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca15	A	T	7: 120,001,056 (GRCm39)	I1531L	probably benign	Het
Adam28	T	C	14: 68,844,914 (GRCm39)	Y791C	probably benign	Het
Ankrd40	T	A	11: 94,229,187 (GRCm39)	I262N	probably damaging	Het
Catsperg2	A	T	7: 29,397,613 (GRCm39)	N1033K	possibly damaging	Het
Cdh10	A	T	15: 18,964,081 (GRCm39)	D81V	probably damaging	Het
Cep290	T	C	10: 100,333,878 (GRCm39)	V310A	possibly damaging	Het
Cep78	T	C	19: 15,951,830 (GRCm39)	Y325C	probably damaging	Het
Clstn3	T	A	6: 124,436,727 (GRCm39)	D197V	probably damaging	Het
Col11a1	T	C	3: 114,005,809 (GRCm39)	I1647T	unknown	Het
Col5a1	G	A	2: 27,854,123 (GRCm39)	R569K	unknown	Het
Cspg4b	G	A	13: 113,456,014 (GRCm39)	V687M		Het
Cyp4a10	T	C	4: 115,381,475 (GRCm39)	S180P	probably benign	Het
D630045J12Rik	T	C	6: 38,135,173 (GRCm39)	I1336V	probably benign	Het
Dchs2	G	A	3: 83,177,784 (GRCm39)	V946M	probably damaging	Het
Dnah10	A	G	5: 124,813,900 (GRCm39)	R347G	probably damaging	Het
Dnah11	T	A	12: 117,991,262 (GRCm39)	D2368V	probably damaging	Het
Ganab	T	C	19: 8,890,228 (GRCm39)	I719T	possibly damaging	Het
Gm10944	C	A	10: 10,557,583 (GRCm39)	A11D	unknown	Het
Gmcl1	T	C	6: 86,691,195 (GRCm39)	M267V	probably benign	Het
Inhbe	T	A	10: 127,186,427 (GRCm39)	D251V	probably damaging	Het
Kcnj1	G	A	9: 32,307,654 (GRCm39)	R26Q	probably benign	Het
Lama5	A	G	2: 179,838,271 (GRCm39)		probably benign	Het
Lin9	T	A	1: 180,494,912 (GRCm39)	D251E	probably damaging	Het
Magel2	T	A	7: 62,028,344 (GRCm39)	I416N	possibly damaging	Het
Mdga2	T	C	12: 66,560,057 (GRCm39)	N772S	probably damaging	Het
Msh3	G	T	13: 92,485,812 (GRCm39)	Q171K	probably benign	Het
Mslnl	T	G	17: 25,961,506 (GRCm39)		probably benign	Het
Mtpn	A	G	6: 35,489,176 (GRCm39)	L116P	possibly damaging	Het
Myh7	T	C	14: 55,213,454 (GRCm39)	T1351A	probably benign	Het
Nectin3	A	T	16: 46,274,998 (GRCm39)	I353N	probably damaging	Het
Nprl3	A	T	11: 32,183,948 (GRCm39)	N500K	probably benign	Het
Nup93	T	A	8: 95,019,348 (GRCm39)	I181N	probably benign	Het
Optc	T	C	1: 133,832,978 (GRCm39)	I41V	probably benign	Het
Or1b1	G	A	2: 36,994,801 (GRCm39)	T287I	probably damaging	Het
Or4p23	T	C	2: 88,576,776 (GRCm39)	H152R	probably damaging	Het
Pcdh7	C	A	5: 58,286,663 (GRCm39)	N1246K	probably benign	Het
Pcdhb3	T	A	18: 37,435,166 (GRCm39)	D377E	probably benign	Het
Pnpla6	C	T	8: 3,573,294 (GRCm39)	P386L	probably benign	Het
Polr3a	T	C	14: 24,520,899 (GRCm39)	T587A	probably benign	Het
Pramel1	T	G	4: 143,125,099 (GRCm39)	L341R	probably damaging	Het
Rhot2	A	T	17: 26,060,740 (GRCm39)	N210K	probably damaging	Het
Slc37a1	A	G	17: 31,519,459 (GRCm39)	I12V	probably benign	Het
Spmip7	T	A	11: 11,414,678 (GRCm39)	D141E		Het
Sstr3	G	T	15: 78,423,792 (GRCm39)	N318K	probably damaging	Het
Ssx2ip	T	C	3: 146,142,955 (GRCm39)	V511A	probably benign	Het
Stfa1	G	A	16: 36,100,930 (GRCm39)	V57I	unknown	Het
Syne1	T	G	10: 5,212,793 (GRCm39)	R3265S	probably damaging	Het
Tacc2	G	T	7: 130,228,533 (GRCm39)	K1739N	probably damaging	Het
Tas2r143	A	T	6: 42,377,673 (GRCm39)	M168L	probably benign	Het
Tm4sf1	A	T	3: 57,202,031 (GRCm39)		probably null	Het
Ttc16	A	G	2: 32,653,017 (GRCm39)	I604T	possibly damaging	Het
Ugt1a10	T	A	1: 87,983,393 (GRCm39)	W64R	possibly damaging	Het
Usp34	A	T	11: 23,439,064 (GRCm39)	H3561L		Het
Vasp	C	T	7: 18,993,376 (GRCm39)	V276I	unknown	Het
Vwa3a	A	G	7: 120,374,687 (GRCm39)	N333S	probably benign	Het
Wipf3	A	G	6: 54,460,866 (GRCm39)	N105D	probably benign	Het
Zfp760	T	C	17: 21,942,663 (GRCm39)	S613P	possibly damaging	Het

Other mutations in Ms4a20

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02142:Ms4a20	APN	19	11,087,695 (GRCm39)	nonsense	probably null
IGL02182:Ms4a20	APN	19	11,074,436 (GRCm39)	splice site	probably benign
IGL03156:Ms4a20	APN	19	11,083,114 (GRCm39)	missense	possibly damaging	0.80
R0189:Ms4a20	UTSW	19	11,074,311 (GRCm39)	missense	possibly damaging	0.46
R0218:Ms4a20	UTSW	19	11,093,801 (GRCm39)	nonsense	probably null
R0464:Ms4a20	UTSW	19	11,089,801 (GRCm39)	missense	probably damaging	1.00
R0617:Ms4a20	UTSW	19	11,089,764 (GRCm39)	missense	probably damaging	1.00
R1171:Ms4a20	UTSW	19	11,089,741 (GRCm39)	missense	probably damaging	0.97
R2341:Ms4a20	UTSW	19	11,083,157 (GRCm39)	missense	probably benign
R5099:Ms4a20	UTSW	19	11,089,825 (GRCm39)	critical splice acceptor site	probably null
R5330:Ms4a20	UTSW	19	11,069,222 (GRCm39)	unclassified	probably benign
R5331:Ms4a20	UTSW	19	11,069,222 (GRCm39)	unclassified	probably benign
R5341:Ms4a20	UTSW	19	11,087,745 (GRCm39)	intron	probably benign
R6109:Ms4a20	UTSW	19	11,079,276 (GRCm39)	missense	possibly damaging	0.66
R6177:Ms4a20	UTSW	19	11,083,114 (GRCm39)	missense	possibly damaging	0.53
R6970:Ms4a20	UTSW	19	11,089,678 (GRCm39)	critical splice donor site	probably null
R7038:Ms4a20	UTSW	19	11,087,675 (GRCm39)	missense	probably benign
R7584:Ms4a20	UTSW	19	11,087,725 (GRCm39)	missense	possibly damaging	0.94
R7752:Ms4a20	UTSW	19	11,079,224 (GRCm39)	missense	probably benign	0.02
R7854:Ms4a20	UTSW	19	11,089,741 (GRCm39)	missense	probably benign	0.01
R8261:Ms4a20	UTSW	19	11,087,707 (GRCm39)	missense	probably damaging	0.97
R8723:Ms4a20	UTSW	19	11,083,055 (GRCm39)	missense	probably damaging	0.99
R9027:Ms4a20	UTSW	19	11,083,055 (GRCm39)	missense	probably damaging	0.99
X0019:Ms4a20	UTSW	19	11,083,156 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- CATTTTGACCCCAAAGGAGC -3'
(R):5'- GGAATAATCTTAAAGGTAGCTCGTG -3'

Sequencing Primer
(F):5'- TTTGACCCCAAAGGAGCTCATTG -3'
(R):5'- AGCTCGTGGTTTTTTCCA -3'

Posted On

2022-03-25