Mutagenetix > Incidental Mutation

Incidental Mutation 'R9270:Cpne5'

702875

Institutional Source

Beutler Lab

Gene Symbol

Cpne5

Ensembl Gene

ENSMUSG00000024008

Gene Name

copine V

Synonyms

A830083G22Rik

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9270 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

29375495-29456764 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

A to G at 29444163 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000024805 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000024805] [ENSMUST00000137727]

AlphaFold

Q8JZW4

Predicted Effect

probably null
Transcript: ENSMUST00000024805

SMART Domains

Protein: ENSMUSP00000024805
Gene: ENSMUSG00000024008

Domain	Start	End	E-Value	Type
C2	23	131	2.09e-9	SMART
C2	161	283	1.88e-11	SMART
low complexity region	290	297	N/A	INTRINSIC
VWA	326	519	1.52e-13	SMART
low complexity region	564	588	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000137727

SMART Domains

Protein: ENSMUSP00000117982
Gene: ENSMUSG00000024008

Domain	Start	End	E-Value	Type
C2	23	131	2.09e-9	SMART

Meta Mutation Damage Score

0.9492

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (85/85)

MGI Phenotype

FUNCTION: Calcium-dependent membrane-binding proteins may regulate molecular events at the interface of the cell membrane and cytoplasm. This gene is one of several genes that encodes a calcium-dependent protein containing two N-terminal type II C2 domains and an integrin A domain-like sequence in the C-terminus. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Actrt3	T	A	3: 30,652,781 (GRCm39)	E104D	probably damaging	Het
Aig1	T	C	10: 13,529,505 (GRCm39)		probably null	Het
Arih2	A	T	9: 108,493,890 (GRCm39)	D174E	probably damaging	Het
Asprv1	T	C	6: 86,606,077 (GRCm39)	F308L	probably damaging	Het
Baiap2l2	A	G	15: 79,168,205 (GRCm39)		probably null	Het
Btla	T	C	16: 45,064,656 (GRCm39)	F203L	possibly damaging	Het
C1rb	A	T	6: 124,551,947 (GRCm39)	D283V	probably damaging	Het
C87436	C	G	6: 86,442,813 (GRCm39)	Q462E	probably benign	Het
Ccdc149	T	C	5: 52,563,352 (GRCm39)	D147G	possibly damaging	Het
Chd6	A	T	2: 160,871,793 (GRCm39)	L214*	probably null	Het
Chrna4	C	A	2: 180,670,643 (GRCm39)	R371L	possibly damaging	Het
Cr1l	T	C	1: 194,789,204 (GRCm39)	E400G	possibly damaging	Het
Creb3l2	T	C	6: 37,332,583 (GRCm39)	N304D	probably damaging	Het
Cyp17a1	T	C	19: 46,656,030 (GRCm39)	T420A	probably benign	Het
Cyp24a1	A	G	2: 170,327,853 (GRCm39)	I463T	probably damaging	Het
Cyp3a41b	A	T	5: 145,514,973 (GRCm39)	I84N	probably damaging	Het
Dnajc6	G	A	4: 101,496,559 (GRCm39)	V909M	possibly damaging	Het
Dtl	A	G	1: 191,288,923 (GRCm39)	Y264H	probably damaging	Het
Dynlt5	A	G	4: 102,845,955 (GRCm39)		probably null	Het
Dysf	C	T	6: 84,077,216 (GRCm39)	R660*	probably null	Het
Egf	A	G	3: 129,529,449 (GRCm39)		probably null	Het
Eva1c	T	C	16: 90,701,231 (GRCm39)	S402P	probably benign	Het
Fcho2	A	T	13: 98,925,869 (GRCm39)		probably null	Het
Fhdc1	G	A	3: 84,352,290 (GRCm39)	R197C	unknown	Het
Foxa2	T	A	2: 147,886,426 (GRCm39)	M136L	probably benign	Het
Gm10226	T	C	17: 21,910,866 (GRCm39)	C34R	possibly damaging	Het
Gm8947	T	C	1: 151,068,853 (GRCm39)	S229P	probably benign	Het
Ift56	C	T	6: 38,366,109 (GRCm39)		probably benign	Het
Ighv9-2	A	T	12: 114,072,896 (GRCm39)	S26T	probably damaging	Het
Itpr3	G	A	17: 27,337,651 (GRCm39)		probably benign	Het
Kat6a	T	G	8: 23,420,190 (GRCm39)	I745M	probably damaging	Het
Klhdc1	T	C	12: 69,309,968 (GRCm39)	L290P	probably damaging	Het
Lcp2	C	T	11: 34,039,688 (GRCm39)	T496I		Het
Map4k4	T	C	1: 40,042,923 (GRCm39)	W593R	probably benign	Het
Mefv	T	G	16: 3,535,841 (GRCm39)	Q29P	probably damaging	Het
Mgat5b	T	C	11: 116,859,269 (GRCm39)	Y34H		Het
Mlip	C	T	9: 77,137,080 (GRCm39)	R609Q	probably benign	Het
Muc2	A	G	7: 141,290,816 (GRCm39)	D34G		Het
Nbeal1	C	T	1: 60,307,548 (GRCm39)	P1687S	possibly damaging	Het
Notch1	T	A	2: 26,369,895 (GRCm39)	I477L	probably damaging	Het
Odad2	T	A	18: 7,217,846 (GRCm39)	K623*	probably null	Het
Or1l4b	G	A	2: 37,037,047 (GRCm39)	M274I	probably benign	Het
Or1s2	T	C	19: 13,758,333 (GRCm39)	V117A	probably benign	Het
Or4a2	A	T	2: 89,248,712 (GRCm39)	L15Q	probably damaging	Het
Or51v8	T	A	7: 103,320,124 (GRCm39)	N38I	probably damaging	Het
Or6c214	A	G	10: 129,591,148 (GRCm39)	M57T	probably damaging	Het
Pak5	A	T	2: 135,958,688 (GRCm39)	S133R	probably damaging	Het
Pcyt1a	C	A	16: 32,285,332 (GRCm39)	D187E	probably benign	Het
Pdlim7	G	T	13: 55,655,354 (GRCm39)	T161K	probably damaging	Het
Phf8-ps	A	C	17: 33,286,701 (GRCm39)	C34G	probably damaging	Het
Pik3r4	A	G	9: 105,547,108 (GRCm39)	K962R	probably benign	Het
Pkd1l2	T	C	8: 117,759,433 (GRCm39)	K1516E	probably damaging	Het
Plk5	C	G	10: 80,193,830 (GRCm39)	R40G	probably damaging	Het
Ptchd3	A	T	11: 121,733,180 (GRCm39)	Y690F	probably benign	Het
Ptpn13	A	T	5: 103,649,735 (GRCm39)	R379S	possibly damaging	Het
Rbm27	C	T	18: 42,438,829 (GRCm39)	A410V	probably benign	Het
Rnase4	A	G	14: 51,342,662 (GRCm39)	T129A	probably benign	Het
Serpinb11	C	T	1: 107,304,533 (GRCm39)	T166I	probably benign	Het
Shank2	A	G	7: 143,963,705 (GRCm39)	T438A	possibly damaging	Het
Slc13a2	T	C	11: 78,295,258 (GRCm39)	N172D	probably damaging	Het
Slc2a8	A	G	2: 32,864,864 (GRCm39)	F428L	probably damaging	Het
Slc38a6	T	C	12: 73,398,544 (GRCm39)	M358T	probably benign	Het
Snx29	A	G	16: 11,213,155 (GRCm39)	H107R	probably benign	Het
Spint3	G	A	2: 164,415,154 (GRCm39)	A21V	probably benign	Het
Susd1	A	T	4: 59,412,226 (GRCm39)	V162E	probably benign	Het
Syne2	T	G	12: 75,977,834 (GRCm39)	N1426K	probably damaging	Het
Synj2	T	C	17: 6,067,875 (GRCm39)	V638A	possibly damaging	Het
Thada	A	T	17: 84,538,589 (GRCm39)	L1473Q	probably damaging	Het
Trim36	G	A	18: 46,300,580 (GRCm39)	S697L	possibly damaging	Het
Ttbk1	A	T	17: 46,781,517 (GRCm39)	I412N	possibly damaging	Het
Tubb2a	T	C	13: 34,258,578 (GRCm39)	D404G	probably damaging	Het
Tyk2	T	A	9: 21,035,841 (GRCm39)	N114Y	probably damaging	Het
Umodl1	A	G	17: 31,185,678 (GRCm39)	D139G	probably damaging	Het
Urb2	A	G	8: 124,750,192 (GRCm39)		probably benign	Het
Vmn2r101	T	A	17: 19,810,244 (GRCm39)	N343K	probably benign	Het
Vnn1	A	G	10: 23,780,464 (GRCm39)	D484G	probably damaging	Het
Vps13b	A	G	15: 35,770,919 (GRCm39)	T2121A	probably benign	Het
Wdr81	T	C	11: 75,345,216 (GRCm39)	E17G	probably benign	Het
Wnk2	T	G	13: 49,224,505 (GRCm39)	K1117Q	probably benign	Het
Zbtb46	C	T	2: 181,066,138 (GRCm39)	R4Q	probably benign	Het
Zfp608	T	A	18: 55,032,190 (GRCm39)	K583N	probably damaging	Het
Zfp729b	A	T	13: 67,740,480 (GRCm39)	L595H	probably damaging	Het

Other mutations in Cpne5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02626:Cpne5	APN	17	29,379,311 (GRCm39)	missense	probably damaging	1.00
R0329:Cpne5	UTSW	17	29,430,634 (GRCm39)	missense	probably damaging	1.00
R0330:Cpne5	UTSW	17	29,430,634 (GRCm39)	missense	probably damaging	1.00
R0462:Cpne5	UTSW	17	29,395,163 (GRCm39)	missense	probably benign	0.12
R0699:Cpne5	UTSW	17	29,428,667 (GRCm39)	missense	probably damaging	1.00
R0891:Cpne5	UTSW	17	29,421,893 (GRCm39)	splice site	probably benign
R1872:Cpne5	UTSW	17	29,423,667 (GRCm39)	missense	probably benign	0.12
R2167:Cpne5	UTSW	17	29,381,306 (GRCm39)	missense	probably damaging	1.00
R3901:Cpne5	UTSW	17	29,378,082 (GRCm39)	missense	unknown
R4037:Cpne5	UTSW	17	29,378,087 (GRCm39)	missense	unknown
R4478:Cpne5	UTSW	17	29,428,450 (GRCm39)	missense	probably damaging	0.99
R4588:Cpne5	UTSW	17	29,383,687 (GRCm39)	missense	probably benign	0.10
R4853:Cpne5	UTSW	17	29,380,172 (GRCm39)	missense	probably benign	0.01
R5630:Cpne5	UTSW	17	29,445,190 (GRCm39)	missense	probably damaging	1.00
R5686:Cpne5	UTSW	17	29,402,991 (GRCm39)	missense	possibly damaging	0.83
R7019:Cpne5	UTSW	17	29,445,196 (GRCm39)	missense	probably damaging	1.00
R7086:Cpne5	UTSW	17	29,378,051 (GRCm39)	missense	unknown
R7472:Cpne5	UTSW	17	29,423,714 (GRCm39)	missense	probably benign	0.02
R7596:Cpne5	UTSW	17	29,445,191 (GRCm39)	missense	possibly damaging	0.90
R7649:Cpne5	UTSW	17	29,445,172 (GRCm39)	missense	probably damaging	1.00
R7787:Cpne5	UTSW	17	29,407,261 (GRCm39)	splice site	probably null
R8406:Cpne5	UTSW	17	29,428,455 (GRCm39)	missense	probably benign	0.00
R8444:Cpne5	UTSW	17	29,407,357 (GRCm39)	missense	probably benign	0.07
R8795:Cpne5	UTSW	17	29,423,662 (GRCm39)	critical splice donor site	probably benign
R8821:Cpne5	UTSW	17	29,430,668 (GRCm39)	missense	probably benign	0.00
R9049:Cpne5	UTSW	17	29,379,332 (GRCm39)	missense	probably damaging	1.00
R9072:Cpne5	UTSW	17	29,430,677 (GRCm39)	missense	probably damaging	0.99
R9091:Cpne5	UTSW	17	29,444,163 (GRCm39)	critical splice donor site	probably null
R9334:Cpne5	UTSW	17	29,423,673 (GRCm39)	missense	probably benign	0.04
R9600:Cpne5	UTSW	17	29,380,520 (GRCm39)	missense	probably damaging	1.00
Z1177:Cpne5	UTSW	17	29,378,156 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGCCAAGAATCCATCGCTAGAC -3'
(R):5'- TTCATTCTCCAGAGCCCCAG -3'

Sequencing Primer
(F):5'- TCTGAGCCAAAATTACTCTCCC -3'
(R):5'- AGCCGCCTCAGCAGATG -3'

Posted On

2022-03-25