Mutagenetix > Incidental Mutation

Incidental Mutation 'R0751:Pld5'

70300

Institutional Source

Beutler Lab

Gene Symbol

Pld5

Ensembl Gene

ENSMUSG00000055214

Gene Name

phospholipase D family member 5

Synonyms

B230365F16Rik

MMRRC Submission

038931-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0751 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

175789872-176102878 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 175872462 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 225 (I225T)

Ref Sequence

ENSEMBL: ENSMUSP00000069326 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065967] [ENSMUST00000111167] [ENSMUST00000125404]

AlphaFold

Q3UNN8

Predicted Effect

probably damaging
Transcript: ENSMUST00000065967
AA Change: I225T

PolyPhen 2 Score 0.977 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000069326
Gene: ENSMUSG00000055214
AA Change: I225T

Domain	Start	End	E-Value	Type
transmembrane domain	68	90	N/A	INTRINSIC
PLDc	215	242	3.62e-3	SMART
Pfam:PLDc_3	245	421	2e-101	PFAM
PLDc	434	460	6.11e0	SMART
low complexity region	511	521	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000111167
AA Change: I163T

PolyPhen 2 Score 0.963 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000106797
Gene: ENSMUSG00000055214
AA Change: I163T

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
PLDc	153	180	3.62e-3	SMART
PLDc	372	398	6.11e0	SMART
low complexity region	449	459	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000125404

SMART Domains

Protein: ENSMUSP00000121428
Gene: ENSMUSG00000055214

Domain	Start	End	E-Value	Type
transmembrane domain	69	91	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144340

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156184

Meta Mutation Damage Score

0.9113

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.2%
20x: 94.4%

Validation Efficiency

99% (73/74)

MGI Phenotype

PHENOTYPE: No abnormal phenotype was observed in a high-throughput screen, nor in a pathology assessment. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ahdc1	T	A	4: 132,792,707 (GRCm39)	M1316K	probably benign	Het
Alox12	T	C	11: 70,137,776 (GRCm39)	I455V	probably benign	Het
Ankrd28	A	G	14: 31,486,225 (GRCm39)	L89P	probably damaging	Het
Aqp9	A	T	9: 71,045,487 (GRCm39)	C41S	probably damaging	Het
Arhgap17	T	C	7: 122,913,913 (GRCm39)	Y199C	probably damaging	Het
Aspm	A	T	1: 139,384,636 (GRCm39)		probably benign	Het
Cacfd1	T	C	2: 26,908,993 (GRCm39)		probably null	Het
Cd33	T	C	7: 43,181,545 (GRCm39)	D205G	probably damaging	Het
Chadl	T	C	15: 81,577,258 (GRCm39)	S198G	probably benign	Het
Chtf8	A	G	8: 107,613,109 (GRCm39)		probably null	Het
Clec4a4	G	T	6: 122,989,671 (GRCm39)	W104L	probably benign	Het
Clock	A	T	5: 76,377,208 (GRCm39)	I696K	possibly damaging	Het
Crtc2	T	A	3: 90,169,940 (GRCm39)	Y445*	probably null	Het
Dapk1	A	T	13: 60,844,112 (GRCm39)	I44F	probably damaging	Het
Dcbld2	T	A	16: 58,270,204 (GRCm39)		probably null	Het
Derl2	T	C	11: 70,905,373 (GRCm39)		probably null	Het
Dnah7c	A	G	1: 46,505,065 (GRCm39)	T154A	probably benign	Het
Dnmt3b	T	A	2: 153,516,762 (GRCm39)		probably null	Het
Dusp3	A	T	11: 101,872,554 (GRCm39)	S106T	probably benign	Het
Eftud2	A	G	11: 102,730,079 (GRCm39)	V897A	probably damaging	Het
Eif3l	T	A	15: 78,959,966 (GRCm39)		probably null	Het
Fbxo33	A	C	12: 59,265,878 (GRCm39)	F130V	probably damaging	Het
Ffar3	T	A	7: 30,554,529 (GRCm39)	N264Y	probably damaging	Het
Fig4	T	C	10: 41,148,978 (GRCm39)	D158G	probably damaging	Het
Fyco1	A	G	9: 123,648,218 (GRCm39)	F1239L	probably damaging	Het
Gabra2	A	G	5: 71,249,442 (GRCm39)		probably benign	Het
Gabra6	C	A	11: 42,205,844 (GRCm39)	R336S	probably benign	Het
Hkdc1	T	C	10: 62,234,452 (GRCm39)	D581G	probably damaging	Het
Ift70a2	C	T	2: 75,808,375 (GRCm39)	A46T	probably damaging	Het
Iqgap1	A	G	7: 80,375,321 (GRCm39)		probably benign	Het
Larp4b	T	C	13: 9,216,345 (GRCm39)		probably benign	Het
Lcp1	A	T	14: 75,436,827 (GRCm39)	M58L	probably benign	Het
Lrrc8a	T	C	2: 30,146,362 (GRCm39)	V392A	possibly damaging	Het
Mavs	A	T	2: 131,088,684 (GRCm39)	Y496F	probably damaging	Het
Mpi	A	T	9: 57,457,897 (GRCm39)	S102T	probably damaging	Het
Mroh9	G	A	1: 162,893,693 (GRCm39)	R161W	possibly damaging	Het
Myo1h	A	T	5: 114,458,747 (GRCm39)	S161C	probably damaging	Het
Napg	T	G	18: 63,127,409 (GRCm39)	H204Q	probably benign	Het
Nelfcd	C	A	2: 174,264,807 (GRCm39)	A182D	probably benign	Het
Ntsr2	G	T	12: 16,704,031 (GRCm39)	K91N	probably damaging	Het
Obscn	A	G	11: 58,972,645 (GRCm39)	S2134P	probably damaging	Het
Ogfod2	G	A	5: 124,251,539 (GRCm39)		probably benign	Het
Or13a19	G	A	7: 139,903,238 (GRCm39)	V209I	probably benign	Het
Or1e26	G	T	11: 73,479,970 (GRCm39)	T198K	probably benign	Het
Pcdha8	T	C	18: 37,127,123 (GRCm39)	V535A	probably damaging	Het
Pdlim2	C	T	14: 70,402,228 (GRCm39)	R296H	probably damaging	Het
Pik3r1	T	C	13: 101,822,866 (GRCm39)		probably null	Het
Pimreg	C	A	11: 71,933,939 (GRCm39)	Q22K	probably benign	Het
Plxnc1	T	C	10: 94,667,195 (GRCm39)		probably benign	Het
Ppip5k2	A	T	1: 97,677,377 (GRCm39)	C306*	probably null	Het
Ptprc	A	G	1: 138,020,668 (GRCm39)	Y588H	probably damaging	Het
Rac2	T	G	15: 78,450,145 (GRCm39)	D65A	possibly damaging	Het
Rgl3	A	G	9: 21,888,676 (GRCm39)		probably null	Het
Serpinb1a	T	C	13: 33,027,199 (GRCm39)	K248E	probably benign	Het
Serpinb9e	A	C	13: 33,443,757 (GRCm39)	E259A	probably benign	Het
Slc12a4	A	T	8: 106,678,532 (GRCm39)	V266E	probably damaging	Het
Slc8b1	A	G	5: 120,662,260 (GRCm39)		probably benign	Het
Spink6	T	C	18: 44,204,605 (GRCm39)		probably benign	Het
Spta1	G	A	1: 174,012,256 (GRCm39)	R354H	probably damaging	Het
Ssb	T	A	2: 69,700,909 (GRCm39)	S330T	probably benign	Het
Stard9	G	T	2: 120,527,966 (GRCm39)	V1408F	probably benign	Het
Sumf2	A	T	5: 129,878,846 (GRCm39)	T61S	probably benign	Het
Sypl2	T	C	3: 108,124,072 (GRCm39)	T157A	probably damaging	Het
Tgfbr3	A	T	5: 107,287,749 (GRCm39)	D483E	probably damaging	Het
Tnrc6a	A	G	7: 122,769,563 (GRCm39)	N451S	possibly damaging	Het
Tradd	T	C	8: 105,986,403 (GRCm39)	E123G	probably damaging	Het
Trim36	T	C	18: 46,329,318 (GRCm39)	T41A	probably damaging	Het
Ttll7	C	T	3: 146,645,746 (GRCm39)	P535S	probably damaging	Het
Ubr4	C	T	4: 139,164,509 (GRCm39)		probably benign	Het
Uqcc5	G	T	14: 30,810,953 (GRCm39)		probably benign	Het
Vmn1r195	A	G	13: 22,463,181 (GRCm39)	Y217C	probably damaging	Het
Vmn2r63	A	C	7: 42,577,459 (GRCm39)	F360V	probably damaging	Het
Vmn2r78	G	A	7: 86,603,588 (GRCm39)	V589M	possibly damaging	Het
Vmn2r-ps158	A	G	7: 42,696,833 (GRCm39)	Y630C	probably damaging	Het
Vrk2	A	G	11: 26,433,331 (GRCm39)		probably benign	Het

Other mutations in Pld5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00815:Pld5	APN	1	175,967,585 (GRCm39)	missense	probably damaging	1.00
IGL00949:Pld5	APN	1	175,803,039 (GRCm39)	missense	probably damaging	1.00
IGL01067:Pld5	APN	1	176,102,445 (GRCm39)	utr 5 prime	probably benign
IGL02174:Pld5	APN	1	176,102,310 (GRCm39)	missense	possibly damaging	0.86
IGL02380:Pld5	APN	1	175,967,610 (GRCm39)	missense	probably damaging	0.97
IGL02879:Pld5	APN	1	175,798,157 (GRCm39)	missense	probably damaging	1.00
R0087:Pld5	UTSW	1	175,812,025 (GRCm39)	missense	probably damaging	0.98
R0135:Pld5	UTSW	1	175,798,155 (GRCm39)	missense	probably damaging	1.00
R0144:Pld5	UTSW	1	175,798,107 (GRCm39)	missense	probably benign	0.00
R0362:Pld5	UTSW	1	175,803,146 (GRCm39)	nonsense	probably null
R0453:Pld5	UTSW	1	175,917,522 (GRCm39)	missense	possibly damaging	0.75
R0454:Pld5	UTSW	1	176,102,295 (GRCm39)	missense	probably benign	0.00
R0722:Pld5	UTSW	1	175,803,081 (GRCm39)	missense	probably benign	0.34
R0785:Pld5	UTSW	1	175,803,018 (GRCm39)	splice site	probably benign
R1184:Pld5	UTSW	1	175,872,462 (GRCm39)	missense	probably damaging	0.98
R1501:Pld5	UTSW	1	175,803,087 (GRCm39)	missense	probably benign	0.36
R1644:Pld5	UTSW	1	175,803,192 (GRCm39)	missense	possibly damaging	0.86
R2012:Pld5	UTSW	1	175,791,579 (GRCm39)	missense	probably benign	0.27
R2426:Pld5	UTSW	1	175,791,542 (GRCm39)	missense	probably benign
R3508:Pld5	UTSW	1	175,821,603 (GRCm39)	missense	probably damaging	1.00
R3917:Pld5	UTSW	1	175,791,504 (GRCm39)	missense	probably benign	0.00
R4207:Pld5	UTSW	1	175,821,441 (GRCm39)	missense	probably damaging	1.00
R4373:Pld5	UTSW	1	175,967,583 (GRCm39)	missense	probably damaging	1.00
R4828:Pld5	UTSW	1	176,102,433 (GRCm39)	missense	probably benign	0.06
R4831:Pld5	UTSW	1	176,102,450 (GRCm39)	utr 5 prime	probably benign
R5861:Pld5	UTSW	1	175,917,571 (GRCm39)	missense	probably damaging	1.00
R6182:Pld5	UTSW	1	175,872,420 (GRCm39)	missense	probably benign	0.35
R6191:Pld5	UTSW	1	175,798,100 (GRCm39)	missense	probably benign	0.04
R6246:Pld5	UTSW	1	175,791,475 (GRCm39)	nonsense	probably null
R6737:Pld5	UTSW	1	175,917,588 (GRCm39)	missense	probably damaging	1.00
R7082:Pld5	UTSW	1	175,917,442 (GRCm39)	missense	probably benign	0.21
R7164:Pld5	UTSW	1	176,041,187 (GRCm39)	start codon destroyed	probably null	0.00
R7237:Pld5	UTSW	1	176,102,301 (GRCm39)	missense	possibly damaging	0.79
R7635:Pld5	UTSW	1	175,821,416 (GRCm39)	critical splice donor site	probably null
R7805:Pld5	UTSW	1	175,872,480 (GRCm39)	missense	probably damaging	1.00
R7967:Pld5	UTSW	1	176,102,264 (GRCm39)	missense	probably benign	0.03
R8038:Pld5	UTSW	1	175,872,463 (GRCm39)	missense	probably benign	0.19
R8995:Pld5	UTSW	1	175,791,580 (GRCm39)	missense	probably benign	0.01
R9033:Pld5	UTSW	1	175,967,585 (GRCm39)	missense	probably damaging	0.99
R9067:Pld5	UTSW	1	175,917,474 (GRCm39)	missense	probably benign	0.00
R9156:Pld5	UTSW	1	175,902,003 (GRCm39)	missense	probably benign	0.05
R9156:Pld5	UTSW	1	175,803,104 (GRCm39)	missense	possibly damaging	0.73
R9712:Pld5	UTSW	1	175,791,572 (GRCm39)	missense	probably benign	0.01
X0004:Pld5	UTSW	1	176,089,088 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- ACACTGGATTGGGGAATGTGCC -3'
(R):5'- TGTAGCATCATAAGCGCCTTCGTC -3'

Sequencing Primer
(F):5'- TGTGCCTCAATGGTAGAAAGC -3'
(R):5'- TGTGCAAGTACCTGGCTC -3'

Posted On

2013-09-30