Mutagenetix > Incidental Mutation

Incidental Mutation 'R9282:Nradd'

703694

Institutional Source

Beutler Lab

Gene Symbol

Nradd

Ensembl Gene

ENSMUSG00000032491

Gene Name

neurotrophin receptor associated death domain

Synonyms

NRDD, PLAIDD, 2610311B09Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.135) question?

Stock #

R9282 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

110450203-110453461 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 110450751 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Leucine at position 142 (Q142L)

Ref Sequence

ENSEMBL: ENSMUSP00000035069 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035069] [ENSMUST00000133191] [ENSMUST00000153838] [ENSMUST00000167320] [ENSMUST00000196488] [ENSMUST00000196735] [ENSMUST00000196876] [ENSMUST00000197399]

AlphaFold

Q8CJ26

PDB Structure

Solution structure of p45 Death Domain [SOLUTION NMR]

Predicted Effect

possibly damaging
Transcript: ENSMUST00000035069
AA Change: Q142L

PolyPhen 2 Score 0.919 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000035069
Gene: ENSMUSG00000032491
AA Change: Q142L

Domain	Start	End	E-Value	Type
transmembrane domain	52	74	N/A	INTRINSIC
Pfam:Death	143	222	1.7e-18	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000130024

SMART Domains

Protein: ENSMUSP00000118061
Gene: ENSMUSG00000056724

Domain	Start	End	E-Value	Type
low complexity region	1	13	N/A	INTRINSIC
low complexity region	236	248	N/A	INTRINSIC
Pfam:DUF4704	345	607	2.5e-29	PFAM
low complexity region	649	664	N/A	INTRINSIC
low complexity region	804	819	N/A	INTRINSIC
Pfam:DUF4800	872	1138	9.9e-113	PFAM
low complexity region	1164	1193	N/A	INTRINSIC
Pfam:PH_BEACH	1204	1291	2.2e-21	PFAM
Beach	1343	1623	5.2e-205	SMART
WD40	1721	1766	1.03e1	SMART
WD40	1769	1808	6.19e-5	SMART
WD40	1820	1859	1.02e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000131017

SMART Domains

Protein: ENSMUSP00000114660
Gene: ENSMUSG00000056724

Domain	Start	End	E-Value	Type
Pfam:DUF4800	1	209	7.5e-97	PFAM
low complexity region	235	264	N/A	INTRINSIC
Pfam:PH_BEACH	275	362	1e-21	PFAM
Beach	414	694	5.2e-205	SMART
WD40	762	807	1.03e1	SMART
WD40	810	849	6.19e-5	SMART
WD40	861	900	1.02e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000133191

SMART Domains

Protein: ENSMUSP00000121373
Gene: ENSMUSG00000056724

Domain	Start	End	E-Value	Type
low complexity region	56	84	N/A	INTRINSIC
low complexity region	192	201	N/A	INTRINSIC
low complexity region	227	238	N/A	INTRINSIC
low complexity region	514	522	N/A	INTRINSIC
low complexity region	527	542	N/A	INTRINSIC
Pfam:Laminin_G_3	578	818	5.9e-8	PFAM
low complexity region	1014	1028	N/A	INTRINSIC
low complexity region	1128	1136	N/A	INTRINSIC
low complexity region	1149	1163	N/A	INTRINSIC
low complexity region	1359	1375	N/A	INTRINSIC
low complexity region	1515	1530	N/A	INTRINSIC
low complexity region	1621	1647	N/A	INTRINSIC
low complexity region	1875	1904	N/A	INTRINSIC
Pfam:PH_BEACH	1908	2002	6.2e-28	PFAM
Beach	2054	2334	5.2e-205	SMART
WD40	2432	2477	1.03e1	SMART
WD40	2480	2519	6.19e-5	SMART
WD40	2531	2570	1.02e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000153838

SMART Domains

Protein: ENSMUSP00000116313
Gene: ENSMUSG00000044791

Domain	Start	End	E-Value	Type
low complexity region	19	34	N/A	INTRINSIC
low complexity region	156	176	N/A	INTRINSIC
low complexity region	185	207	N/A	INTRINSIC
low complexity region	297	313	N/A	INTRINSIC
low complexity region	392	419	N/A	INTRINSIC
low complexity region	795	809	N/A	INTRINSIC
low complexity region	867	883	N/A	INTRINSIC
low complexity region	1015	1039	N/A	INTRINSIC
low complexity region	1066	1077	N/A	INTRINSIC
low complexity region	1384	1395	N/A	INTRINSIC
AWS	1468	1523	8.39e-30	SMART
SET	1524	1647	3.07e-41	SMART
PostSET	1648	1664	1.27e-5	SMART
Blast:SET	1689	1714	2e-6	BLAST
low complexity region	1884	1909	N/A	INTRINSIC
low complexity region	1956	1967	N/A	INTRINSIC
coiled coil region	2090	2113	N/A	INTRINSIC
low complexity region	2189	2211	N/A	INTRINSIC
low complexity region	2248	2265	N/A	INTRINSIC
WW	2363	2395	2.1e-11	SMART
Pfam:SRI	2440	2530	6e-30	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000167320

SMART Domains

Protein: ENSMUSP00000128586
Gene: ENSMUSG00000056724

Domain	Start	End	E-Value	Type
low complexity region	56	84	N/A	INTRINSIC
low complexity region	192	201	N/A	INTRINSIC
low complexity region	227	238	N/A	INTRINSIC
low complexity region	514	522	N/A	INTRINSIC
low complexity region	527	542	N/A	INTRINSIC
low complexity region	763	775	N/A	INTRINSIC
Pfam:DUF4704	872	1148	9.2e-32	PFAM
low complexity region	1149	1163	N/A	INTRINSIC
low complexity region	1366	1382	N/A	INTRINSIC
low complexity region	1522	1537	N/A	INTRINSIC
Pfam:DUF4800	1590	1856	1.5e-112	PFAM
low complexity region	1882	1911	N/A	INTRINSIC
Pfam:PH_BEACH	1922	2009	3.1e-21	PFAM
Beach	2061	2341	5.2e-205	SMART
WD40	2439	2484	1.03e1	SMART
WD40	2487	2526	6.19e-5	SMART
WD40	2538	2577	1.02e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000196488

SMART Domains

Protein: ENSMUSP00000143265
Gene: ENSMUSG00000056724

Domain	Start	End	E-Value	Type
low complexity region	56	84	N/A	INTRINSIC
low complexity region	192	201	N/A	INTRINSIC
low complexity region	227	238	N/A	INTRINSIC
low complexity region	487	495	N/A	INTRINSIC
low complexity region	500	515	N/A	INTRINSIC
Pfam:Laminin_G_3	551	791	5.3e-6	PFAM
low complexity region	987	1001	N/A	INTRINSIC
low complexity region	1101	1109	N/A	INTRINSIC
low complexity region	1122	1136	N/A	INTRINSIC
low complexity region	1332	1348	N/A	INTRINSIC
low complexity region	1488	1503	N/A	INTRINSIC
low complexity region	1594	1620	N/A	INTRINSIC
low complexity region	1848	1877	N/A	INTRINSIC
Pfam:PH_BEACH	1881	1975	3.1e-25	PFAM
Beach	2027	2307	3.8e-209	SMART
WD40	2405	2450	6.3e-2	SMART
WD40	2453	2492	3.8e-7	SMART
WD40	2504	2543	6.5e-8	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000196735
AA Change: Q142L

PolyPhen 2 Score 0.919 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000143785
Gene: ENSMUSG00000032491
AA Change: Q142L

Domain	Start	End	E-Value	Type
transmembrane domain	52	74	N/A	INTRINSIC
Pfam:Death	143	200	2.1e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000196814

Predicted Effect

probably benign
Transcript: ENSMUST00000196876

SMART Domains

Protein: ENSMUSP00000142925
Gene: ENSMUSG00000032491

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000197399

SMART Domains

Protein: ENSMUSP00000142572
Gene: ENSMUSG00000044791

Domain	Start	End	E-Value	Type
WW	7	39	2.1e-11	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000200460

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele are viable, fertile and overtly normal with no significant change in the total number of dorsal root ganglion (DRG) sensory neurons, despite an increased proportion of DRG sensory neurons expressing p75NTR. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abi3bp	G	A	16: 56,440,867 (GRCm39)	V701M	unknown	Het
Adam2	G	A	14: 66,267,238 (GRCm39)	P674S	probably benign	Het
Adam24	T	A	8: 41,133,674 (GRCm39)	Y381N	probably damaging	Het
Adgrv1	A	G	13: 81,251,491 (GRCm39)	S6209P	probably damaging	Het
Aox4	A	T	1: 58,285,028 (GRCm39)	K593N	possibly damaging	Het
Aqp3	A	G	4: 41,093,640 (GRCm39)	V258A	possibly damaging	Het
Atg16l1	T	A	1: 87,707,906 (GRCm39)	F390I	possibly damaging	Het
B4galt6	T	A	18: 20,825,509 (GRCm39)	Y239F	possibly damaging	Het
Cmtr2	T	C	8: 110,948,977 (GRCm39)	M429T	probably benign	Het
Col5a2	C	G	1: 45,478,029 (GRCm39)		probably null	Het
Dcc	T	C	18: 71,815,249 (GRCm39)	D375G	possibly damaging	Het
Dnah14	T	C	1: 181,642,077 (GRCm39)	Y31H		Het
Fam131a	G	A	16: 20,520,243 (GRCm39)	R232H	possibly damaging	Het
Fam186a	A	G	15: 99,839,879 (GRCm39)	Y2122H	probably damaging	Het
Focad	A	T	4: 88,115,059 (GRCm39)	I421F	unknown	Het
Fscb	T	G	12: 64,520,097 (GRCm39)	E456D	possibly damaging	Het
Furin	C	A	7: 80,040,846 (GRCm39)	S664I	probably benign	Het
Ganc	A	G	2: 120,290,381 (GRCm39)	E906G	probably benign	Het
Gdf5	C	G	2: 155,783,915 (GRCm39)	D346H	probably damaging	Het
Golga4	T	C	9: 118,385,893 (GRCm39)	L1005P	probably damaging	Het
Ifit1bl1	T	C	19: 34,571,908 (GRCm39)	N183S	probably benign	Het
Itpr1	T	A	6: 108,370,984 (GRCm39)	F1084I	probably damaging	Het
Katnal1	A	T	5: 148,831,021 (GRCm39)	Y184*	probably null	Het
Lrrc37a	A	G	11: 103,391,633 (GRCm39)	I1264T	probably benign	Het
Map3k2	T	A	18: 32,342,805 (GRCm39)	M234K	probably damaging	Het
Mcm3ap	T	A	10: 76,342,352 (GRCm39)	V1615E	probably damaging	Het
Mkrn2	A	G	6: 115,591,534 (GRCm39)		probably null	Het
Nicn1	C	T	9: 108,171,708 (GRCm39)	R163C	possibly damaging	Het
Ophn1	G	A	X: 97,622,145 (GRCm39)	T668M	probably benign	Het
Or56b35	T	C	7: 104,963,781 (GRCm39)	I190T	probably benign	Het
Pdzd7	A	G	19: 45,028,622 (GRCm39)	F174L	probably damaging	Het
Pi4k2b	C	T	5: 52,900,879 (GRCm39)	T99I	probably benign	Het
Pigv	A	T	4: 133,391,973 (GRCm39)	V399D	probably damaging	Het
Pla2g4a	C	A	1: 149,747,207 (GRCm39)	L326F	probably damaging	Het
Psmg1	T	C	16: 95,790,717 (GRCm39)	I73M	probably damaging	Het
Rcl1	T	C	19: 29,093,170 (GRCm39)	S62P	probably damaging	Het
Slc23a4	T	A	6: 34,955,861 (GRCm39)	I58F	probably damaging	Het
Slc36a2	G	T	11: 55,060,837 (GRCm39)	T191K	probably benign	Het
Sorbs2	T	G	8: 46,248,774 (GRCm39)	V675G	probably benign	Het
Tbc1d30	T	C	10: 121,142,128 (GRCm39)		probably null	Het
Tbc1d4	A	G	14: 101,845,616 (GRCm39)	V94A	possibly damaging	Het
Tdrd5	T	C	1: 156,105,030 (GRCm39)	Y532C	probably benign	Het
Tll2	T	A	19: 41,074,772 (GRCm39)	I931L	probably benign	Het
Tlr3	T	C	8: 45,851,643 (GRCm39)	N418S	probably benign	Het
Tmco1	C	T	1: 167,136,132 (GRCm39)		probably benign	Het
Tshr	T	A	12: 91,474,518 (GRCm39)	M164K	possibly damaging	Het
Ttc21b	A	G	2: 66,056,349 (GRCm39)	V679A	possibly damaging	Het
Ttn	A	G	2: 76,730,861 (GRCm39)	Y4951H	unknown	Het
Usf1	T	A	1: 171,243,373 (GRCm39)	V50D	possibly damaging	Het
Utp6	A	T	11: 79,826,851 (GRCm39)	M575K	probably benign	Het
Vmn1r197	A	T	13: 22,512,608 (GRCm39)	R176S	possibly damaging	Het
Vmn2r104	A	T	17: 20,261,098 (GRCm39)	F442I	probably damaging	Het
Vmn2r94	A	G	17: 18,497,751 (GRCm39)	F7S	possibly damaging	Het
Vps41	G	T	13: 19,013,401 (GRCm39)	E340*	probably null	Het

Other mutations in Nradd

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01977:Nradd	APN	9	110,451,237 (GRCm39)	missense	possibly damaging	0.84
R1898:Nradd	UTSW	9	110,450,676 (GRCm39)	missense	probably damaging	1.00
R2048:Nradd	UTSW	9	110,450,697 (GRCm39)	missense	probably benign
R2147:Nradd	UTSW	9	110,451,243 (GRCm39)	missense	probably benign	0.09
R4729:Nradd	UTSW	9	110,450,979 (GRCm39)	missense	possibly damaging	0.90
R6232:Nradd	UTSW	9	110,450,655 (GRCm39)	missense	probably damaging	0.98
R7132:Nradd	UTSW	9	110,451,329 (GRCm39)	missense	probably benign	0.00
R8085:Nradd	UTSW	9	110,451,179 (GRCm39)	missense	possibly damaging	0.84
R8364:Nradd	UTSW	9	110,450,536 (GRCm39)	missense	probably damaging	1.00
R9157:Nradd	UTSW	9	110,451,188 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGCACTCTGAGGGTAGCTCTATTG -3'
(R):5'- GTGGTGACAGCAACGTCTTC -3'

Sequencing Primer
(F):5'- CTGAGGGTAGCTCTATTGCCTTC -3'
(R):5'- GTCTGGAGCCCTGTATTCCCAG -3'

Posted On

2022-03-25