Mutagenetix > Incidental Mutation

Incidental Mutation 'R9283:Polm'

703764

Institutional Source

Beutler Lab

Gene Symbol

Polm

Ensembl Gene

ENSMUSG00000020474

Gene Name

polymerase (DNA directed), mu

Synonyms

Tdt-N, B230309I03Rik

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9283 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

5777860-5788016 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 5779050 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Histidine at position 490 (L490H)

Ref Sequence

ENSEMBL: ENSMUSP00000105463 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020767] [ENSMUST00000109837]

AlphaFold

Q9JIW4

Predicted Effect

silent
Transcript: ENSMUST00000020767

SMART Domains

Protein: ENSMUSP00000020767
Gene: ENSMUSG00000020474

Domain	Start	End	E-Value	Type
low complexity region	12	26	N/A	INTRINSIC
PDB:2HTF\|A	27	124	2e-42	PDB
POLXc	150	495	1.78e-115	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000109837
AA Change: L490H

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000105463
Gene: ENSMUSG00000020474
AA Change: L490H

Domain	Start	End	E-Value	Type
low complexity region	12	26	N/A	INTRINSIC
Blast:BRCT	27	112	1e-45	BLAST
PDB:2HTF\|A	27	124	4e-42	PDB
POLXc	150	500	8.68e-78	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene display an apparently normal phenotype. However, B cell maturation and proliferation is abnormal. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aaas	A	G	15: 102,258,499 (GRCm39)	V47A	probably benign	Het
Aamdc	A	G	7: 97,199,842 (GRCm39)	V140A	probably benign	Het
Acsm3	T	A	7: 119,373,115 (GRCm39)	M206K	possibly damaging	Het
Adprhl1	T	C	8: 13,273,540 (GRCm39)	T1073A	probably benign	Het
Aoc1	A	G	6: 48,882,261 (GRCm39)	I46V	probably benign	Het
Ap4b1	A	G	3: 103,722,259 (GRCm39)	S246G	probably damaging	Het
Bach1	A	G	16: 87,516,211 (GRCm39)	T251A	probably benign	Het
Cry2	A	G	2: 92,244,249 (GRCm39)	L308P	probably damaging	Het
Daam1	G	T	12: 72,035,696 (GRCm39)	G964C	probably damaging	Het
Ddx10	T	G	9: 53,146,656 (GRCm39)	N189H	probably benign	Het
Dlg4	T	A	11: 69,922,617 (GRCm39)	C241*	probably null	Het
Dpy19l1	G	T	9: 24,332,412 (GRCm39)	Y489*	probably null	Het
E2f4	C	A	8: 106,024,395 (GRCm39)	A8E	probably benign	Het
Gm3486	T	C	14: 41,210,268 (GRCm39)	N71S	possibly damaging	Het
Ighv1-23	A	G	12: 114,728,225 (GRCm39)	W66R	probably damaging	Het
Kcnh5	A	G	12: 75,023,307 (GRCm39)	L587P	probably damaging	Het
Kctd16	T	C	18: 40,392,233 (GRCm39)	Y274H	possibly damaging	Het
Kif16b	T	A	2: 142,554,900 (GRCm39)	M633L	probably benign	Het
Kif23	T	C	9: 61,852,651 (GRCm39)	N21S	probably benign	Het
Lamtor3	C	T	3: 137,633,123 (GRCm39)	R85C	probably benign	Het
Lin9	A	T	1: 180,493,493 (GRCm39)	T240S	probably damaging	Het
Mtus1	C	A	8: 41,536,519 (GRCm39)	G399V	probably benign	Het
Mup8	C	T	4: 60,221,903 (GRCm39)	V77I	probably benign	Het
Myo5b	C	T	18: 74,777,149 (GRCm39)	A403V	probably benign	Het
Naf1	C	A	8: 67,313,503 (GRCm39)	A162E	unknown	Het
Nat10	G	A	2: 103,556,092 (GRCm39)	Q910*	probably null	Het
Nos1	G	C	5: 118,017,402 (GRCm39)	R255P	probably benign	Het
Npas2	A	G	1: 39,326,689 (GRCm39)	K58R	probably damaging	Het
Nsd2	A	T	5: 34,001,058 (GRCm39)	I192F	probably benign	Het
Nup98	C	A	7: 101,788,037 (GRCm39)	R1011L	probably benign	Het
Ophn1	G	A	X: 97,622,145 (GRCm39)	T668M	probably benign	Het
Or10a3	C	T	7: 108,480,289 (GRCm39)	A175T	probably benign	Het
Or2d4	G	A	7: 106,543,806 (GRCm39)	T134I	probably benign	Het
Or5b105	C	A	19: 13,079,821 (GRCm39)	M282I	probably damaging	Het
Or5b12b	T	A	19: 12,861,961 (GRCm39)	C239S	probably damaging	Het
Or7e177	A	G	9: 20,212,419 (GRCm39)	K309E	possibly damaging	Het
Pcdh17	C	T	14: 84,685,593 (GRCm39)	P687S	possibly damaging	Het
Pdpr	C	T	8: 111,856,268 (GRCm39)	R664W	possibly damaging	Het
Peg10	GC	GCTCC	6: 4,756,452 (GRCm39)		probably benign	Het
Pfas	A	T	11: 68,884,708 (GRCm39)	V498E	probably damaging	Het
Pfpl	A	T	19: 12,406,220 (GRCm39)	Y157F	probably damaging	Het
Piezo2	A	T	18: 63,157,637 (GRCm39)	F2358I	probably damaging	Het
Pip5k1b	T	C	19: 24,337,376 (GRCm39)	Y304C	probably damaging	Het
Pls1	G	A	9: 95,655,642 (GRCm39)	A370V	probably benign	Het
Prdm5	T	C	6: 65,858,060 (GRCm39)	C375R	probably damaging	Het
Scmh1	A	T	4: 120,319,337 (GRCm39)	M21L	probably benign	Het
Sec16a	C	A	2: 26,313,904 (GRCm39)	R449S		Het
Sin3a	C	T	9: 57,002,717 (GRCm39)	T203I	probably damaging	Het
Six5	A	G	7: 18,829,148 (GRCm39)	E196G	probably damaging	Het
Skint8	T	C	4: 111,785,644 (GRCm39)	V30A	probably damaging	Het
Slc2a12	G	A	10: 22,540,511 (GRCm39)	G122E	probably damaging	Het
Smim14	A	G	5: 65,625,780 (GRCm39)	C11R	probably damaging	Het
Sorbs2	T	G	8: 46,248,774 (GRCm39)	V675G	probably benign	Het
Tanc1	T	C	2: 59,630,174 (GRCm39)	I718T	probably damaging	Het
Tead4	A	G	6: 128,205,592 (GRCm39)	L370P	probably damaging	Het
Tnrc6c	A	G	11: 117,591,630 (GRCm39)	K15E	unknown	Het
Trim55	T	G	3: 19,699,612 (GRCm39)		probably null	Het
Trpm1	A	T	7: 63,873,623 (GRCm39)	N510I	probably benign	Het
Trps1	A	G	15: 50,694,447 (GRCm39)	V616A	probably damaging	Het
Usp42	A	T	5: 143,705,264 (GRCm39)	V405E	probably damaging	Het
Zfp11	A	T	5: 129,734,748 (GRCm39)	S238T	probably damaging	Het
Zfp608	T	C	18: 55,030,913 (GRCm39)	H1009R	possibly damaging	Het

Other mutations in Polm

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02184:Polm	APN	11	5,780,137 (GRCm39)	missense	probably benign	0.00
gott	UTSW	11	5,779,512 (GRCm39)	missense	possibly damaging	0.46
lobet	UTSW	11	5,779,491 (GRCm39)	missense	probably damaging	1.00
IGL02988:Polm	UTSW	11	5,786,343 (GRCm39)	missense	probably benign	0.02
R0626:Polm	UTSW	11	5,786,207 (GRCm39)	missense	probably damaging	0.97
R0736:Polm	UTSW	11	5,785,495 (GRCm39)	missense	possibly damaging	0.94
R1723:Polm	UTSW	11	5,784,776 (GRCm39)	missense	probably benign	0.04
R1893:Polm	UTSW	11	5,785,574 (GRCm39)	missense	possibly damaging	0.65
R2473:Polm	UTSW	11	5,779,881 (GRCm39)	missense	possibly damaging	0.94
R3812:Polm	UTSW	11	5,779,512 (GRCm39)	missense	possibly damaging	0.46
R4676:Polm	UTSW	11	5,785,749 (GRCm39)	nonsense	probably null
R4705:Polm	UTSW	11	5,787,663 (GRCm39)	missense	possibly damaging	0.66
R4988:Polm	UTSW	11	5,787,618 (GRCm39)	missense	probably damaging	0.98
R5276:Polm	UTSW	11	5,779,393 (GRCm39)	missense	probably benign	0.16
R6401:Polm	UTSW	11	5,779,491 (GRCm39)	missense	probably damaging	1.00
R6783:Polm	UTSW	11	5,785,534 (GRCm39)	missense	probably damaging	1.00
R7876:Polm	UTSW	11	5,781,695 (GRCm39)	missense	probably benign	0.00
R7961:Polm	UTSW	11	5,780,155 (GRCm39)	missense	possibly damaging	0.50
R8151:Polm	UTSW	11	5,787,906 (GRCm39)	unclassified	probably benign
R8184:Polm	UTSW	11	5,781,707 (GRCm39)	missense	possibly damaging	0.94
R9108:Polm	UTSW	11	5,779,872 (GRCm39)	missense	probably benign	0.00
R9430:Polm	UTSW	11	5,784,749 (GRCm39)	missense	probably damaging	0.98
R9570:Polm	UTSW	11	5,779,713 (GRCm39)	missense	probably damaging	1.00
R9651:Polm	UTSW	11	5,781,732 (GRCm39)	missense	probably damaging	1.00
X0018:Polm	UTSW	11	5,780,158 (GRCm39)	missense	possibly damaging	0.79

Predicted Primers

PCR Primer
(F):5'- TGAAAGCTGAGTTGACTCGGG -3'
(R):5'- ACAACCTCAAGTTCGGTGTAC -3'

Sequencing Primer
(F):5'- GACTCGGGGTCACACTCTACTAATG -3'
(R):5'- CCAGGCAGCATGACATGGTTC -3'

Posted On

2022-03-25