Mutagenetix > Incidental Mutation

Incidental Mutation 'R9289:Or52n5'

704142

Institutional Source

Beutler Lab

Gene Symbol

Or52n5

Ensembl Gene

ENSMUSG00000073916

Gene Name

olfactory receptor family 52 subfamily N member 5

Synonyms

GA_x6K02T2PBJ9-7567376-7568329, Olfr669, MOR34-6

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.181) question?

Stock #

R9289 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

104587735-104588688 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 104587816 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 28 (W28R)

Ref Sequence

ENSEMBL: ENSMUSP00000147742 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098164] [ENSMUST00000210138] [ENSMUST00000214260]

AlphaFold

Q8VGU9

Predicted Effect

probably damaging
Transcript: ENSMUST00000098164
AA Change: W28R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000095767
Gene: ENSMUSG00000073916
AA Change: W28R

Domain	Start	End	E-Value	Type
Pfam:7tm_4	33	313	8.7e-103	PFAM
Pfam:7TM_GPCR_Srsx	37	209	1.9e-10	PFAM
Pfam:7tm_1	43	295	2.7e-18	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000210138
AA Change: W28R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000214260
AA Change: W28R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Meta Mutation Damage Score

0.9189

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

100% (53/53)

MGI Phenotype

FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700018F24Rik	C	T	5: 144,982,333 (GRCm39)	T306I	probably benign	Het
Aurkb	T	C	11: 68,941,175 (GRCm39)	I250T	probably damaging	Het
C1qtnf1	A	G	11: 118,334,672 (GRCm39)	T51A	probably benign	Het
C1rb	G	T	6: 124,552,272 (GRCm39)	R330L	possibly damaging	Het
Cd8b1	G	A	6: 71,306,777 (GRCm39)		probably null	Het
Cep57l1	A	T	10: 41,607,082 (GRCm39)	D160E	probably damaging	Het
Ces1f	C	T	8: 93,992,491 (GRCm39)	S320N	probably benign	Het
Cfap54	A	G	10: 92,656,936 (GRCm39)	S3039P	possibly damaging	Het
Chia1	A	T	3: 106,022,502 (GRCm39)		probably benign	Het
Chka	T	G	19: 3,935,953 (GRCm39)	F220V	possibly damaging	Het
Cmtm2b	A	G	8: 105,048,980 (GRCm39)		probably benign	Het
Dgcr8	C	T	16: 18,098,079 (GRCm39)		probably benign	Het
Dhx30	T	C	9: 109,920,603 (GRCm39)	T304A	possibly damaging	Het
Dhx30	A	T	9: 109,922,189 (GRCm39)	D164E	probably benign	Het
Dip2b	A	T	15: 100,071,152 (GRCm39)	K661I	probably damaging	Het
Dlgap4	G	T	2: 156,546,514 (GRCm39)	R394L	possibly damaging	Het
Dop1b	T	A	16: 93,568,681 (GRCm39)	L1581H	probably damaging	Het
Fam219a	C	A	4: 41,521,942 (GRCm39)	G46V	probably damaging	Het
Fer1l6	G	A	15: 58,490,766 (GRCm39)	V1028M	probably damaging	Het
Glb1	C	A	9: 114,249,558 (GRCm39)	A129E	probably damaging	Het
Heatr1	T	C	13: 12,447,608 (GRCm39)	V1767A	probably benign	Het
Ift88	T	A	14: 57,718,199 (GRCm39)	S591T	probably benign	Het
Itgb4	A	G	11: 115,885,187 (GRCm39)	K1023R	probably benign	Het
Mfng	C	A	15: 78,643,457 (GRCm39)	S250I	probably damaging	Het
Mmp9	A	G	2: 164,796,800 (GRCm39)	T723A	probably benign	Het
Mzf1	T	A	7: 12,785,534 (GRCm39)	H299L	probably benign	Het
Naa40	T	C	19: 7,211,485 (GRCm39)	K47E	possibly damaging	Het
Ncdn	A	C	4: 126,643,903 (GRCm39)	F306L	possibly damaging	Het
Notch3	A	G	17: 32,377,254 (GRCm39)	C246R	probably damaging	Het
Npc1l1	A	T	11: 6,168,355 (GRCm39)	Y945*	probably null	Het
Or2av9	T	A	11: 58,380,745 (GRCm39)	I279L	probably benign	Het
Or2n1d	A	T	17: 38,646,320 (GRCm39)	T91S	possibly damaging	Het
Or2y14	C	T	11: 49,404,635 (GRCm39)	P57S	probably damaging	Het
Pcnx1	C	A	12: 82,028,853 (GRCm39)	D1044E		Het
Pgm2l1	T	A	7: 99,919,629 (GRCm39)	I575K	probably damaging	Het
Plat	T	C	8: 23,272,100 (GRCm39)	I553T	probably damaging	Het
Prrc2c	A	G	1: 162,507,130 (GRCm39)	V2513A	probably benign	Het
Qser1	A	T	2: 104,617,593 (GRCm39)	V983E	possibly damaging	Het
Ring1	A	G	17: 34,241,547 (GRCm39)	S190P	possibly damaging	Het
Rnf150	A	G	8: 83,716,982 (GRCm39)	E163G	probably benign	Het
Scgb2b12	T	C	7: 32,026,060 (GRCm39)	H44R	probably benign	Het
Septin4	T	A	11: 87,459,792 (GRCm39)	C513*	probably null	Het
Shtn1	T	C	19: 58,998,257 (GRCm39)	K379E	probably damaging	Het
Slc52a2	G	T	15: 76,424,475 (GRCm39)	V238L	probably benign	Het
Smg1	T	C	7: 117,744,639 (GRCm39)	H3171R	possibly damaging	Het
Tada3	A	G	6: 113,347,264 (GRCm39)	V342A	possibly damaging	Het
Tbc1d20	T	C	2: 152,153,262 (GRCm39)	V264A	probably damaging	Het
Tmco5	G	A	2: 116,710,745 (GRCm39)	A22T	probably benign	Het
Tmem63b	A	G	17: 45,975,697 (GRCm39)	F549S	probably benign	Het
Trav16d-dv11	T	C	14: 53,285,086 (GRCm39)	F54S	probably benign	Het
Trim7	A	T	11: 48,736,281 (GRCm39)	K5*	probably null	Het
Usp48	G	A	4: 137,340,996 (GRCm39)	G332E	probably benign	Het
Zfp78	T	C	7: 6,381,367 (GRCm39)	I139T	probably benign	Het
Zfp839	T	A	12: 110,834,878 (GRCm39)	V711D	probably benign	Het

Other mutations in Or52n5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01527:Or52n5	APN	7	104,588,198 (GRCm39)	missense	possibly damaging	0.88
IGL01677:Or52n5	APN	7	104,587,852 (GRCm39)	missense	probably benign	0.01
IGL01900:Or52n5	APN	7	104,588,369 (GRCm39)	missense	probably damaging	1.00
IGL02270:Or52n5	APN	7	104,588,576 (GRCm39)	missense	possibly damaging	0.95
R0482:Or52n5	UTSW	7	104,588,021 (GRCm39)	missense	possibly damaging	0.56
R0970:Or52n5	UTSW	7	104,588,284 (GRCm39)	missense	probably benign	0.05
R4260:Or52n5	UTSW	7	104,587,803 (GRCm39)	missense	probably damaging	0.99
R4845:Or52n5	UTSW	7	104,588,570 (GRCm39)	missense	possibly damaging	0.95
R4947:Or52n5	UTSW	7	104,587,949 (GRCm39)	missense	possibly damaging	0.95
R5438:Or52n5	UTSW	7	104,588,344 (GRCm39)	missense	probably benign	0.03
R5735:Or52n5	UTSW	7	104,587,966 (GRCm39)	missense	probably benign	0.01
R5943:Or52n5	UTSW	7	104,587,850 (GRCm39)	missense	possibly damaging	0.78
R6435:Or52n5	UTSW	7	104,588,041 (GRCm39)	missense	probably damaging	0.99
R6942:Or52n5	UTSW	7	104,588,104 (GRCm39)	missense	possibly damaging	0.56
R7061:Or52n5	UTSW	7	104,587,883 (GRCm39)	missense	probably damaging	1.00
R7122:Or52n5	UTSW	7	104,588,405 (GRCm39)	missense	probably damaging	0.99
R7378:Or52n5	UTSW	7	104,588,638 (GRCm39)	missense	probably benign	0.31
R7898:Or52n5	UTSW	7	104,588,573 (GRCm39)	missense	probably damaging	1.00
R8260:Or52n5	UTSW	7	104,587,879 (GRCm39)	missense	probably damaging	1.00
R8478:Or52n5	UTSW	7	104,588,477 (GRCm39)	missense	probably benign	0.00
R9356:Or52n5	UTSW	7	104,588,373 (GRCm39)	missense	probably benign	0.43
R9558:Or52n5	UTSW	7	104,588,615 (GRCm39)	missense	possibly damaging	0.91
R9607:Or52n5	UTSW	7	104,588,207 (GRCm39)	missense	probably benign	0.02

Predicted Primers

PCR Primer
(F):5'- GCTGATCCTACTCATAAGTGTAATTCC -3'
(R):5'- GGCAAGCAGTGAAGTTAATTTCC -3'

Sequencing Primer
(F):5'- AGTTTTAAATTTTCATCAGGAAAGCC -3'
(R):5'- CCTTGAGTTTGAACCAGAAAATGAAG -3'

Posted On

2022-03-25