Mutagenetix > Incidental Mutation

Incidental Mutation 'R9292:Pfdn5'

704354

Institutional Source

Beutler Lab

Gene Symbol

Pfdn5

Ensembl Gene

ENSMUSG00000001289

Gene Name

prefoldin 5

Synonyms

D15Ertd697e, c-myc binding protein MM-1, 1700010A06Rik, MM-1, 1190001O17Rik, EIG-1

MMRRC Submission

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R9292 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

102234551-102239925 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 102234883 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 30 (S30P)

Ref Sequence

ENSEMBL: ENSMUSP00000129178 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001335] [ENSMUST00000062492] [ENSMUST00000064924] [ENSMUST00000165671] [ENSMUST00000165717] [ENSMUST00000166658] [ENSMUST00000169637] [ENSMUST00000170627] [ENSMUST00000229050]

AlphaFold

Q9WU28

Predicted Effect

probably damaging
Transcript: ENSMUST00000001335
AA Change: S30P

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000001335
Gene: ENSMUSG00000001289
AA Change: S30P

Domain	Start	End	E-Value	Type
SCOP:d1fxkc_	12	58	4e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000062492

SMART Domains

Protein: ENSMUSP00000126970
Gene: ENSMUSG00000001289

Domain	Start	End	E-Value	Type
Pfam:Prefoldin	1	75	2.2e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000064924

SMART Domains

Protein: ENSMUSP00000064465
Gene: ENSMUSG00000058290

Domain	Start	End	E-Value	Type
low complexity region	236	245	N/A	INTRINSIC
low complexity region	433	445	N/A	INTRINSIC
low complexity region	785	794	N/A	INTRINSIC
low complexity region	907	918	N/A	INTRINSIC
low complexity region	1312	1317	N/A	INTRINSIC
low complexity region	1565	1579	N/A	INTRINSIC
low complexity region	1625	1636	N/A	INTRINSIC
Pfam:Peptidase_C50	1716	2065	4.2e-93	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000165671

SMART Domains

Protein: ENSMUSP00000128526
Gene: ENSMUSG00000001289

Domain	Start	End	E-Value	Type
Pfam:Prefoldin	1	75	2.2e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000165717

SMART Domains

Protein: ENSMUSP00000132441
Gene: ENSMUSG00000001289

Domain	Start	End	E-Value	Type
Pfam:Prefoldin	1	72	1.4e-20	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000166658
AA Change: S30P

PolyPhen 2 Score 0.932 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000129178
Gene: ENSMUSG00000001289
AA Change: S30P

Domain	Start	End	E-Value	Type
Pfam:Prefoldin	22	143	8.6e-32	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000169637

SMART Domains

Protein: ENSMUSP00000128263
Gene: ENSMUSG00000001289

Domain	Start	End	E-Value	Type
Pfam:Prefoldin	1	58	3.4e-19	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000170627

SMART Domains

Protein: ENSMUSP00000131245
Gene: ENSMUSG00000001289

Domain	Start	End	E-Value	Type
Pfam:Prefoldin	7	99	4.6e-22	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000229050

Predicted Effect

probably benign
Transcript: ENSMUST00000229942

Meta Mutation Damage Score

0.3196

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.5%

Validation Efficiency

100% (58/58)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the prefoldin alpha subunit family. The encoded protein is one of six subunits of prefoldin, a molecular chaperone complex that binds and stabilizes newly synthesized polypeptides, thereby allowing them to fold correctly. The complex, consisting of two alpha and four beta subunits, forms a double beta barrel assembly with six protruding coiled-coils. The encoded protein may also repress the transcriptional activity of the proto-oncogene c-Myc. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for an ENU-induced mutation exhibit photoreceptor degeneration, central nervous system abnormalities, and male infertility. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1b	C	T	5: 8,862,843 (GRCm39)	T175I	probably benign	Het
Acat3	T	C	17: 13,146,255 (GRCm39)	T243A	probably benign	Het
Aebp1	C	A	11: 5,815,260 (GRCm39)	P264Q	possibly damaging	Het
Aldh1l1	T	C	6: 90,568,867 (GRCm39)	F723L	probably damaging	Het
Atp13a4	T	A	16: 29,241,500 (GRCm39)	I723F		Het
Bop1	T	C	15: 76,351,031 (GRCm39)	T97A	probably benign	Het
Casq1	T	C	1: 172,043,114 (GRCm39)	Y194C	probably damaging	Het
Cep250	G	A	2: 155,832,688 (GRCm39)	E1538K	probably damaging	Het
Col12a1	A	T	9: 79,585,805 (GRCm39)	V1218E	probably benign	Het
Coq10b	T	A	1: 55,110,868 (GRCm39)	M212K	probably damaging	Het
Dchs1	T	C	7: 105,403,120 (GRCm39)	T3141A	probably damaging	Het
Dnajc10	A	G	2: 80,176,916 (GRCm39)	T624A	probably benign	Het
Dock8	A	G	19: 25,160,995 (GRCm39)		probably benign	Het
Dsg1c	T	A	18: 20,416,775 (GRCm39)	V892E	probably damaging	Het
Eif4g3	A	G	4: 137,921,382 (GRCm39)	R1370G	possibly damaging	Het
Elmo1	T	G	13: 20,784,429 (GRCm39)		probably null	Het
Erc2	T	A	14: 27,498,799 (GRCm39)	I225N	probably damaging	Het
Ermp1	C	A	19: 29,606,049 (GRCm39)	V422L	probably benign	Het
Fam124b	T	A	1: 80,191,221 (GRCm39)	H54L	probably benign	Het
Gabbr1	T	G	17: 37,366,784 (GRCm39)	I336S	possibly damaging	Het
Galk2	T	C	2: 125,817,218 (GRCm39)	Y336H	probably damaging	Het
Gm40460	CACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG	CACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG	7: 141,794,554 (GRCm39)		probably benign	Het
Grm4	A	G	17: 27,692,037 (GRCm39)	F194S	probably damaging	Het
Gtf2a1	G	A	12: 91,534,964 (GRCm39)	Q189*	probably null	Het
Gtf3c1	T	C	7: 125,273,563 (GRCm39)		probably benign	Het
Hspa2	A	G	12: 76,452,047 (GRCm39)	E247G	probably damaging	Het
Lpar1	T	C	4: 58,486,558 (GRCm39)	R238G	probably benign	Het
Ltbp1	C	A	17: 75,583,436 (GRCm39)	S412Y	probably damaging	Het
Nup210	A	C	6: 91,051,235 (GRCm39)	S383A	possibly damaging	Het
Or10j3	C	T	1: 173,031,099 (GRCm39)	P59S	probably damaging	Het
Or11g2	T	C	14: 50,856,513 (GRCm39)	V278A	possibly damaging	Het
Or8b51	T	A	9: 38,569,071 (GRCm39)	N206Y	probably damaging	Het
Pah	T	A	10: 87,403,218 (GRCm39)	Y198N	probably damaging	Het
Pcdhga4	A	T	18: 37,819,713 (GRCm39)	I421L	probably benign	Het
Pde6b	T	C	5: 108,536,751 (GRCm39)	I149T	probably benign	Het
Peli3	G	A	19: 4,988,117 (GRCm39)	P81L	possibly damaging	Het
Plcb3	A	T	19: 6,942,042 (GRCm39)	L263Q	probably damaging	Het
Pld3	T	C	7: 27,238,879 (GRCm39)	M190V	probably benign	Het
Rab6a	A	G	7: 100,285,963 (GRCm39)	E186G	probably benign	Het
Ralyl	T	A	3: 14,172,312 (GRCm39)	D60E	probably benign	Het
Rtl1	G	A	12: 109,556,673 (GRCm39)	A1722V	possibly damaging	Het
Scarf1	T	C	11: 75,406,006 (GRCm39)	Y97H	probably damaging	Het
Sf3a2	T	A	10: 80,640,560 (GRCm39)	V457E	unknown	Het
Sh2d4b	C	G	14: 40,537,914 (GRCm39)	E403Q	probably damaging	Het
Slc12a7	A	G	13: 73,932,707 (GRCm39)	E65G	possibly damaging	Het
Spink5	T	C	18: 44,148,075 (GRCm39)	V905A	possibly damaging	Het
Spred1	T	C	2: 117,005,832 (GRCm39)	F198S	probably benign	Het
St18	C	A	1: 6,898,106 (GRCm39)	T636K	probably benign	Het
Stag3	T	A	5: 138,299,712 (GRCm39)	D874E	probably benign	Het
Suco	T	C	1: 161,671,574 (GRCm39)	T502A	probably damaging	Het
Swt1	T	C	1: 151,278,787 (GRCm39)	I457V	probably benign	Het
Syne2	G	T	12: 75,997,823 (GRCm39)	C2266F	probably benign	Het
Tcirg1	T	C	19: 3,947,840 (GRCm39)	N532D	probably damaging	Het
Tfdp1	T	A	8: 13,420,580 (GRCm39)	N136K	probably benign	Het
Tmem245	T	C	4: 56,926,173 (GRCm39)		probably benign	Het
Tmem245	T	C	4: 56,937,979 (GRCm39)	I190V	probably benign	Het
Trp53bp1	C	T	2: 121,046,177 (GRCm39)	V1208M	probably damaging	Het
Tulp1	T	A	17: 28,582,738 (GRCm39)	K137*	probably null	Het
Zfp534	A	T	4: 147,759,095 (GRCm39)	C525S	probably damaging	Het

Other mutations in Pfdn5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
PIT4520001:Pfdn5	UTSW	15	102,237,158 (GRCm39)	missense	probably benign	0.02
R1474:Pfdn5	UTSW	15	102,236,946 (GRCm39)	splice site	probably null
R2011:Pfdn5	UTSW	15	102,234,956 (GRCm39)	missense	possibly damaging	0.72
R2012:Pfdn5	UTSW	15	102,234,956 (GRCm39)	missense	possibly damaging	0.72
R4565:Pfdn5	UTSW	15	102,235,220 (GRCm39)	unclassified	probably benign
R4613:Pfdn5	UTSW	15	102,237,187 (GRCm39)	missense	probably benign	0.19
R7888:Pfdn5	UTSW	15	102,237,024 (GRCm39)	missense	probably damaging	1.00
R7936:Pfdn5	UTSW	15	102,236,978 (GRCm39)	missense	possibly damaging	0.93
R9372:Pfdn5	UTSW	15	102,235,286 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- AATGCTCAAGAACCAGCTGGAC -3'
(R):5'- TTCTGTAGGCAACATGCGGG -3'

Sequencing Primer
(F):5'- TGGACCAGGTGAGGACC -3'
(R):5'- AACATGCGGGGGCTCCTG -3'

Posted On

2022-03-25