Incidental Mutation 'R9294:Virma'
ID 704439
Institutional Source Beutler Lab
Gene Symbol Virma
Ensembl Gene ENSMUSG00000040720
Gene Name vir like m6A methyltransferase associated
Synonyms 1110037F02Rik
MMRRC Submission
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R9294 (G1)
Quality Score 225.009
Status Not validated
Chromosome 4
Chromosomal Location 11485958-11550684 bp(+) (GRCm38)
Type of Mutation nonsense
DNA Base Change (assembly) C to T at 11513507 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Arginine to Stop codon at position 454 (R454*)
Ref Sequence ENSEMBL: ENSMUSP00000063188 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000055372] [ENSMUST00000059914] [ENSMUST00000108307]
AlphaFold A2AIV2
Predicted Effect probably null
Transcript: ENSMUST00000055372
AA Change: R454*
SMART Domains Protein: ENSMUSP00000063188
Gene: ENSMUSG00000040720
AA Change: R454*

DomainStartEndE-ValueType
low complexity region 139 153 N/A INTRINSIC
low complexity region 172 198 N/A INTRINSIC
low complexity region 236 267 N/A INTRINSIC
low complexity region 276 297 N/A INTRINSIC
low complexity region 615 625 N/A INTRINSIC
low complexity region 1008 1020 N/A INTRINSIC
low complexity region 1112 1124 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000059914
AA Change: R454*
SMART Domains Protein: ENSMUSP00000058078
Gene: ENSMUSG00000040720
AA Change: R454*

DomainStartEndE-ValueType
low complexity region 139 153 N/A INTRINSIC
low complexity region 172 198 N/A INTRINSIC
low complexity region 236 267 N/A INTRINSIC
low complexity region 276 297 N/A INTRINSIC
low complexity region 615 625 N/A INTRINSIC
low complexity region 1008 1020 N/A INTRINSIC
low complexity region 1112 1124 N/A INTRINSIC
low complexity region 1224 1232 N/A INTRINSIC
low complexity region 1443 1458 N/A INTRINSIC
low complexity region 1460 1474 N/A INTRINSIC
low complexity region 1618 1634 N/A INTRINSIC
low complexity region 1684 1697 N/A INTRINSIC
low complexity region 1750 1757 N/A INTRINSIC
low complexity region 1796 1808 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000108307
AA Change: R454*
SMART Domains Protein: ENSMUSP00000103943
Gene: ENSMUSG00000040720
AA Change: R454*

DomainStartEndE-ValueType
Pfam:VIR_N 5 266 2e-110 PFAM
low complexity region 276 297 N/A INTRINSIC
low complexity region 615 625 N/A INTRINSIC
low complexity region 1058 1070 N/A INTRINSIC
low complexity region 1162 1174 N/A INTRINSIC
low complexity region 1274 1282 N/A INTRINSIC
low complexity region 1493 1508 N/A INTRINSIC
low complexity region 1510 1524 N/A INTRINSIC
low complexity region 1668 1684 N/A INTRINSIC
low complexity region 1734 1747 N/A INTRINSIC
low complexity region 1800 1807 N/A INTRINSIC
low complexity region 1846 1858 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 98.8%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 87 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
0610009O20Rik T G 18: 38,261,076 (GRCm38) L442R probably damaging Het
1700067K01Rik A G 8: 84,003,379 (GRCm38) Y165C probably damaging Het
2410089E03Rik T C 15: 8,203,327 (GRCm38) V1110A probably benign Het
2810474O19Rik T A 6: 149,326,432 (GRCm38) N325K probably benign Het
4930452B06Rik A G 14: 8,578,361 (GRCm38) I127T possibly damaging Het
Abcb11 T A 2: 69,265,496 (GRCm38) K833N possibly damaging Het
Abcb1a T A 5: 8,686,171 (GRCm38) M188K probably benign Het
Akap1 A T 11: 88,837,140 (GRCm38) V672D probably damaging Het
Anapc4 A G 5: 52,864,525 (GRCm38) T650A possibly damaging Het
Ash1l C A 3: 88,982,990 (GRCm38) S725R possibly damaging Het
Axdnd1 T A 1: 156,420,347 (GRCm38) K28* probably null Het
C8b C A 4: 104,786,995 (GRCm38) H286Q probably benign Het
Cacna2d1 A G 5: 16,012,398 (GRCm38) K34E probably damaging Het
Ccdc14 T A 16: 34,697,358 (GRCm38) H154Q probably damaging Het
Ccdc184 A G 15: 98,168,512 (GRCm38) D66G probably damaging Het
Ccdc62 A G 5: 123,954,709 (GRCm38) I586V possibly damaging Het
Chadl A T 15: 81,694,490 (GRCm38) C313S probably damaging Het
Clec14a C A 12: 58,268,750 (GRCm38) A29S probably damaging Het
Col26a1 C T 5: 136,757,754 (GRCm38) G161D probably benign Het
Ctbp2 A G 7: 133,014,232 (GRCm38) S325P probably damaging Het
Dcaf13 A G 15: 39,130,292 (GRCm38) D260G possibly damaging Het
Dhx37 G A 5: 125,422,672 (GRCm38) P575L probably benign Het
Dnajc6 T C 4: 101,550,857 (GRCm38) probably null Het
Eapp T C 12: 54,690,276 (GRCm38) T145A unknown Het
Efcab5 A G 11: 77,121,238 (GRCm38) M730T probably benign Het
Eif4g3 T A 4: 138,190,657 (GRCm38) D1305E probably damaging Het
Endou A T 15: 97,712,065 (GRCm38) V450E probably benign Het
F10 A T 8: 13,048,177 (GRCm38) K127* probably null Het
Fbxw21 A G 9: 109,143,762 (GRCm38) F368S probably damaging Het
Fezf1 A T 6: 23,245,798 (GRCm38) L456Q possibly damaging Het
Foxo3 C T 10: 42,197,025 (GRCm38) V499M probably damaging Het
Fyco1 A C 9: 123,794,813 (GRCm38) C1384G probably damaging Het
Galnt6 G T 15: 100,704,151 (GRCm38) S258R possibly damaging Het
Gemin5 A G 11: 58,137,748 (GRCm38) V882A probably benign Het
Gm10750 A G 2: 149,016,187 (GRCm38) L48P unknown Het
Gm11639 A G 11: 104,831,300 (GRCm38) I1913V probably benign Het
Gm16503 T A 4: 147,541,114 (GRCm38) F22I unknown Het
Hdac10 A G 15: 89,126,277 (GRCm38) C281R probably damaging Het
Hikeshi T C 7: 89,935,760 (GRCm38) S79G probably damaging Het
Ifitm2 AG A 7: 140,955,901 (GRCm38) probably null Het
Itpr3 A G 17: 27,111,217 (GRCm38) E1603G probably damaging Het
Lrrc37a A T 11: 103,504,533 (GRCm38) V22E probably benign Het
Man1a C T 10: 53,933,491 (GRCm38) probably null Het
Mdga1 A G 17: 29,839,897 (GRCm38) L5P probably damaging Het
Mettl7a1 A G 15: 100,313,133 (GRCm38) E213G probably damaging Het
Mup6 A G 4: 60,004,838 (GRCm38) I76M probably benign Het
Nbea A T 3: 56,091,092 (GRCm38) M98K probably benign Het
Nckap1l A G 15: 103,473,539 (GRCm38) E454G probably damaging Het
Notch3 A T 17: 32,143,691 (GRCm38) L1320Q probably benign Het
Nrn1 A T 13: 36,726,674 (GRCm38) L128H probably damaging Het
Numa1 A G 7: 102,012,796 (GRCm38) D1898G probably damaging Het
Numa1 T C 7: 101,995,416 (GRCm38) S200P possibly damaging Het
Olfr1124 G A 2: 87,434,666 (GRCm38) A60T probably benign Het
Olfr152 A C 2: 87,782,523 (GRCm38) probably null Het
Olfr366 T C 2: 37,220,110 (GRCm38) I207T possibly damaging Het
Olfr700 A T 7: 106,806,398 (GRCm38) S21R possibly damaging Het
P2ry6 A T 7: 100,938,926 (GRCm38) Y75* probably null Het
Pbrm1 T A 14: 31,084,803 (GRCm38) C1062* probably null Het
Pcdh15 A G 10: 74,643,728 (GRCm38) E557G unknown Het
Pcdh7 T C 5: 57,721,335 (GRCm38) L744P probably benign Het
Plekhg3 A T 12: 76,562,278 (GRCm38) I142L possibly damaging Het
Plk4 C T 3: 40,811,891 (GRCm38) H695Y probably damaging Het
Pms1 T C 1: 53,208,057 (GRCm38) H243R probably benign Het
Prdm14 T C 1: 13,122,483 (GRCm38) D344G possibly damaging Het
R3hdml A G 2: 163,502,332 (GRCm38) I214V probably benign Het
Rab11fip5 T C 6: 85,348,710 (GRCm38) N238S probably benign Het
Sacs T A 14: 61,240,319 (GRCm38) Y732N possibly damaging Het
Scfd1 T A 12: 51,393,866 (GRCm38) M187K possibly damaging Het
Serpina1d A G 12: 103,767,998 (GRCm38) C16R probably damaging Het
Slc2a12 T C 10: 22,665,095 (GRCm38) I283T possibly damaging Het
Smarca5 A G 8: 80,719,803 (GRCm38) Y423H probably damaging Het
Srrm3 C A 5: 135,868,261 (GRCm38) A366E unknown Het
St7 A T 6: 17,844,914 (GRCm38) K134* probably null Het
St8sia5 T G 18: 77,254,829 (GRCm38) C412G probably damaging Het
Tanc2 A T 11: 105,886,458 (GRCm38) I821F probably damaging Het
Tbrg4 A G 11: 6,624,204 (GRCm38) M6T probably benign Het
Tcf20 A T 15: 82,852,696 (GRCm38) I1518N probably benign Het
Tctn3 A G 19: 40,607,276 (GRCm38) V355A probably benign Het
Tenm2 A T 11: 36,024,500 (GRCm38) F2070Y probably damaging Het
Tex2 A G 11: 106,568,535 (GRCm38) V23A probably damaging Het
Thrsp C G 7: 97,417,074 (GRCm38) E144Q probably damaging Het
Top2a A C 11: 99,001,078 (GRCm38) S1114A probably benign Het
Tpm1 A G 9: 67,029,716 (GRCm38) Y267H probably benign Het
Txndc2 G T 17: 65,639,024 (GRCm38) P53T unknown Het
Ugt2b36 A T 5: 87,081,017 (GRCm38) I389N probably damaging Het
Vwa3b T A 1: 37,035,801 (GRCm38) H16Q probably damaging Het
Zbp1 A G 2: 173,210,643 (GRCm38) M240T possibly damaging Het
Other mutations in Virma
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00428:Virma APN 4 11,519,424 (GRCm38) splice site probably benign
IGL00477:Virma APN 4 11,519,006 (GRCm38) missense probably damaging 0.99
IGL01293:Virma APN 4 11,521,114 (GRCm38) missense probably damaging 1.00
IGL01410:Virma APN 4 11,518,929 (GRCm38) nonsense probably null
IGL01531:Virma APN 4 11,528,753 (GRCm38) missense probably damaging 1.00
IGL01672:Virma APN 4 11,527,792 (GRCm38) missense probably damaging 1.00
IGL01724:Virma APN 4 11,528,672 (GRCm38) missense probably damaging 1.00
IGL01747:Virma APN 4 11,526,877 (GRCm38) missense probably damaging 1.00
IGL01776:Virma APN 4 11,527,792 (GRCm38) missense probably damaging 1.00
IGL02064:Virma APN 4 11,513,163 (GRCm38) missense possibly damaging 0.87
IGL02243:Virma APN 4 11,546,031 (GRCm38) missense probably damaging 1.00
IGL02244:Virma APN 4 11,546,031 (GRCm38) missense probably damaging 1.00
IGL02445:Virma APN 4 11,527,029 (GRCm38) missense probably damaging 0.97
IGL02546:Virma APN 4 11,494,804 (GRCm38) missense probably damaging 0.99
IGL02807:Virma APN 4 11,507,079 (GRCm38) splice site probably benign
IGL02967:Virma APN 4 11,514,096 (GRCm38) missense probably benign 0.01
IGL03211:Virma APN 4 11,548,770 (GRCm38) nonsense probably null
IGL03242:Virma APN 4 11,527,669 (GRCm38) missense possibly damaging 0.70
IGL03256:Virma APN 4 11,542,207 (GRCm38) splice site probably benign
IGL03327:Virma APN 4 11,518,984 (GRCm38) missense probably benign 0.00
IGL03346:Virma APN 4 11,518,984 (GRCm38) missense probably benign 0.00
PIT4802001:Virma UTSW 4 11,546,008 (GRCm38) missense probably damaging 0.99
R0142:Virma UTSW 4 11,548,783 (GRCm38) missense probably benign 0.04
R0355:Virma UTSW 4 11,528,626 (GRCm38) nonsense probably null
R0522:Virma UTSW 4 11,519,416 (GRCm38) critical splice donor site probably null
R0600:Virma UTSW 4 11,498,769 (GRCm38) missense probably damaging 0.99
R1435:Virma UTSW 4 11,528,621 (GRCm38) missense probably damaging 1.00
R1489:Virma UTSW 4 11,521,164 (GRCm38) missense probably damaging 1.00
R1568:Virma UTSW 4 11,528,776 (GRCm38) missense probably damaging 0.99
R1616:Virma UTSW 4 11,544,954 (GRCm38) missense probably damaging 1.00
R1655:Virma UTSW 4 11,494,786 (GRCm38) missense probably damaging 1.00
R1695:Virma UTSW 4 11,494,814 (GRCm38) missense probably damaging 0.98
R1835:Virma UTSW 4 11,540,511 (GRCm38) missense probably benign 0.02
R1951:Virma UTSW 4 11,513,907 (GRCm38) missense probably benign 0.00
R1991:Virma UTSW 4 11,519,242 (GRCm38) missense probably benign 0.06
R2145:Virma UTSW 4 11,548,726 (GRCm38) splice site probably benign
R2172:Virma UTSW 4 11,527,843 (GRCm38) missense possibly damaging 0.82
R2217:Virma UTSW 4 11,544,924 (GRCm38) missense probably damaging 1.00
R2218:Virma UTSW 4 11,544,924 (GRCm38) missense probably damaging 1.00
R2248:Virma UTSW 4 11,518,927 (GRCm38) missense probably damaging 1.00
R2342:Virma UTSW 4 11,501,316 (GRCm38) missense probably damaging 1.00
R3424:Virma UTSW 4 11,513,177 (GRCm38) nonsense probably null
R4397:Virma UTSW 4 11,513,901 (GRCm38) missense possibly damaging 0.81
R4449:Virma UTSW 4 11,498,828 (GRCm38) critical splice donor site probably null
R4660:Virma UTSW 4 11,513,505 (GRCm38) missense probably damaging 1.00
R4698:Virma UTSW 4 11,528,636 (GRCm38) missense probably damaging 0.99
R4878:Virma UTSW 4 11,544,971 (GRCm38) missense probably damaging 1.00
R4937:Virma UTSW 4 11,521,147 (GRCm38) nonsense probably null
R5031:Virma UTSW 4 11,542,116 (GRCm38) nonsense probably null
R5040:Virma UTSW 4 11,528,746 (GRCm38) missense probably benign 0.01
R5061:Virma UTSW 4 11,494,840 (GRCm38) missense possibly damaging 0.95
R5091:Virma UTSW 4 11,519,392 (GRCm38) missense probably benign 0.00
R5137:Virma UTSW 4 11,546,297 (GRCm38) missense probably damaging 1.00
R5262:Virma UTSW 4 11,539,926 (GRCm38) missense probably benign 0.01
R5297:Virma UTSW 4 11,494,819 (GRCm38) missense probably damaging 1.00
R5730:Virma UTSW 4 11,542,154 (GRCm38) missense probably benign 0.44
R5818:Virma UTSW 4 11,513,319 (GRCm38) missense possibly damaging 0.92
R5835:Virma UTSW 4 11,514,036 (GRCm38) missense probably damaging 1.00
R6125:Virma UTSW 4 11,521,172 (GRCm38) missense probably damaging 0.98
R6197:Virma UTSW 4 11,505,498 (GRCm38) missense probably damaging 0.96
R6222:Virma UTSW 4 11,527,820 (GRCm38) missense probably damaging 1.00
R6793:Virma UTSW 4 11,539,968 (GRCm38) missense probably damaging 1.00
R7028:Virma UTSW 4 11,519,249 (GRCm38) missense possibly damaging 0.50
R7356:Virma UTSW 4 11,513,595 (GRCm38) missense probably damaging 0.99
R7383:Virma UTSW 4 11,514,026 (GRCm38) missense probably damaging 0.98
R7391:Virma UTSW 4 11,508,099 (GRCm38) missense probably damaging 0.99
R7425:Virma UTSW 4 11,546,211 (GRCm38) missense possibly damaging 0.95
R7556:Virma UTSW 4 11,518,927 (GRCm38) missense probably damaging 1.00
R7715:Virma UTSW 4 11,513,016 (GRCm38) splice site probably null
R7715:Virma UTSW 4 11,549,682 (GRCm38) missense probably damaging 1.00
R7986:Virma UTSW 4 11,540,023 (GRCm38) missense probably benign 0.01
R7990:Virma UTSW 4 11,513,983 (GRCm38) missense probably benign 0.00
R8048:Virma UTSW 4 11,539,918 (GRCm38) nonsense probably null
R8050:Virma UTSW 4 11,528,643 (GRCm38) missense probably benign 0.22
R8165:Virma UTSW 4 11,542,128 (GRCm38) missense probably benign 0.00
R8412:Virma UTSW 4 11,521,261 (GRCm38) critical splice donor site probably null
R8544:Virma UTSW 4 11,516,949 (GRCm38) missense probably benign
R8551:Virma UTSW 4 11,513,397 (GRCm38) missense probably damaging 1.00
R8699:Virma UTSW 4 11,528,678 (GRCm38) missense probably benign 0.04
R8739:Virma UTSW 4 11,540,643 (GRCm38) critical splice donor site probably null
R8950:Virma UTSW 4 11,519,047 (GRCm38) nonsense probably null
R9015:Virma UTSW 4 11,540,494 (GRCm38) missense probably benign 0.27
R9038:Virma UTSW 4 11,526,922 (GRCm38) missense possibly damaging 0.93
R9115:Virma UTSW 4 11,498,744 (GRCm38) missense probably benign 0.15
R9404:Virma UTSW 4 11,513,626 (GRCm38) missense probably benign 0.17
R9477:Virma UTSW 4 11,528,753 (GRCm38) missense probably damaging 1.00
R9532:Virma UTSW 4 11,507,078 (GRCm38) critical splice donor site probably null
R9649:Virma UTSW 4 11,486,045 (GRCm38) start codon destroyed probably null 0.08
R9657:Virma UTSW 4 11,544,898 (GRCm38) missense probably damaging 0.99
R9780:Virma UTSW 4 11,513,442 (GRCm38) missense possibly damaging 0.75
R9800:Virma UTSW 4 11,546,007 (GRCm38) missense probably damaging 0.99
X0020:Virma UTSW 4 11,486,055 (GRCm38) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- GAAGCCTCGGTGAAGTTAACTG -3'
(R):5'- ATGCTAATGACACTGTCCAAAGC -3'

Sequencing Primer
(F):5'- CTGAACTGCTAGACCTGTATCAG -3'
(R):5'- TGACACTGTCCAAAGCTTTAAAAG -3'
Posted On 2022-03-25