Mutagenetix > Incidental Mutation

Incidental Mutation 'R9294:Fyco1'

704471

Institutional Source

Beutler Lab

Gene Symbol

Fyco1

Ensembl Gene

ENSMUSG00000025241

Gene Name

FYVE and coiled-coil domain containing 1

Synonyms

Mem2, ZFYVE7, 2810409M01Rik

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9294 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

123789500-123851899 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 123794813 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Glycine at position 1384 (C1384G)

Ref Sequence

ENSEMBL: ENSMUSP00000081764 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000084715] [ENSMUST00000167595]

AlphaFold

Q8VDC1

Predicted Effect

probably damaging
Transcript: ENSMUST00000084715
AA Change: C1384G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000081764
Gene: ENSMUSG00000025241
AA Change: C1384G

Domain	Start	End	E-Value	Type
Pfam:RUN	19	167	4.7e-12	PFAM
low complexity region	196	206	N/A	INTRINSIC
coiled coil region	223	270	N/A	INTRINSIC
coiled coil region	348	1110	N/A	INTRINSIC
FYVE	1124	1191	2.69e-16	SMART
PDB:1OLM\|E	1343	1428	1e-5	PDB

Predicted Effect

probably damaging
Transcript: ENSMUST00000167595
AA Change: C1384G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000133222
Gene: ENSMUSG00000025241
AA Change: C1384G

Domain	Start	End	E-Value	Type
Pfam:RUN	20	167	7.8e-12	PFAM
low complexity region	196	206	N/A	INTRINSIC
coiled coil region	223	270	N/A	INTRINSIC
coiled coil region	348	1110	N/A	INTRINSIC
FYVE	1124	1191	2.69e-16	SMART
PDB:1OLM\|E	1343	1428	1e-5	PDB

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that contains a RUN domain, FYVE-type zinc finger domain and Golgi dynamics (GOLD) domain. The encoded protein plays a role in microtubule plus end-directed transport of autophagic vesicles through interactions with the small GTPase Rab7, phosphatidylinositol-3-phosphate (PI3P) and the autophagosome marker LC3. Mutations in this gene are a cause of autosomal recessive congenital cataract-2 (CATC2). [provided by RefSeq, Dec 2011]

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610009O20Rik	T	G	18: 38,261,076	L442R	probably damaging	Het
1700067K01Rik	A	G	8: 84,003,379	Y165C	probably damaging	Het
2410089E03Rik	T	C	15: 8,203,327	V1110A	probably benign	Het
2810474O19Rik	T	A	6: 149,326,432	N325K	probably benign	Het
4930452B06Rik	A	G	14: 8,578,361	I127T	possibly damaging	Het
Abcb11	T	A	2: 69,265,496	K833N	possibly damaging	Het
Abcb1a	T	A	5: 8,686,171	M188K	probably benign	Het
Akap1	A	T	11: 88,837,140	V672D	probably damaging	Het
Anapc4	A	G	5: 52,864,525	T650A	possibly damaging	Het
Ash1l	C	A	3: 88,982,990	S725R	possibly damaging	Het
Axdnd1	T	A	1: 156,420,347	K28*	probably null	Het
C8b	C	A	4: 104,786,995	H286Q	probably benign	Het
Cacna2d1	A	G	5: 16,012,398	K34E	probably damaging	Het
Ccdc14	T	A	16: 34,697,358	H154Q	probably damaging	Het
Ccdc184	A	G	15: 98,168,512	D66G	probably damaging	Het
Ccdc62	A	G	5: 123,954,709	I586V	possibly damaging	Het
Chadl	A	T	15: 81,694,490	C313S	probably damaging	Het
Clec14a	C	A	12: 58,268,750	A29S	probably damaging	Het
Col26a1	C	T	5: 136,757,754	G161D	probably benign	Het
Ctbp2	A	G	7: 133,014,232	S325P	probably damaging	Het
Dcaf13	A	G	15: 39,130,292	D260G	possibly damaging	Het
Dhx37	G	A	5: 125,422,672	P575L	probably benign	Het
Dnajc6	T	C	4: 101,550,857		probably null	Het
Eapp	T	C	12: 54,690,276	T145A	unknown	Het
Efcab5	A	G	11: 77,121,238	M730T	probably benign	Het
Eif4g3	T	A	4: 138,190,657	D1305E	probably damaging	Het
Endou	A	T	15: 97,712,065	V450E	probably benign	Het
F10	A	T	8: 13,048,177	K127*	probably null	Het
Fbxw21	A	G	9: 109,143,762	F368S	probably damaging	Het
Fezf1	A	T	6: 23,245,798	L456Q	possibly damaging	Het
Foxo3	C	T	10: 42,197,025	V499M	probably damaging	Het
Galnt6	G	T	15: 100,704,151	S258R	possibly damaging	Het
Gemin5	A	G	11: 58,137,748	V882A	probably benign	Het
Gm10750	A	G	2: 149,016,187	L48P	unknown	Het
Gm11639	A	G	11: 104,831,300	I1913V	probably benign	Het
Gm16503	T	A	4: 147,541,114	F22I	unknown	Het
Hdac10	A	G	15: 89,126,277	C281R	probably damaging	Het
Hikeshi	T	C	7: 89,935,760	S79G	probably damaging	Het
Ifitm2	AG	A	7: 140,955,901		probably null	Het
Itpr3	A	G	17: 27,111,217	E1603G	probably damaging	Het
Lrrc37a	A	T	11: 103,504,533	V22E	probably benign	Het
Man1a	C	T	10: 53,933,491		probably null	Het
Mdga1	A	G	17: 29,839,897	L5P	probably damaging	Het
Mettl7a1	A	G	15: 100,313,133	E213G	probably damaging	Het
Mup6	A	G	4: 60,004,838	I76M	probably benign	Het
Nbea	A	T	3: 56,091,092	M98K	probably benign	Het
Nckap1l	A	G	15: 103,473,539	E454G	probably damaging	Het
Notch3	A	T	17: 32,143,691	L1320Q	probably benign	Het
Nrn1	A	T	13: 36,726,674	L128H	probably damaging	Het
Numa1	T	C	7: 101,995,416	S200P	possibly damaging	Het
Numa1	A	G	7: 102,012,796	D1898G	probably damaging	Het
Olfr1124	G	A	2: 87,434,666	A60T	probably benign	Het
Olfr152	A	C	2: 87,782,523		probably null	Het
Olfr366	T	C	2: 37,220,110	I207T	possibly damaging	Het
Olfr700	A	T	7: 106,806,398	S21R	possibly damaging	Het
P2ry6	A	T	7: 100,938,926	Y75*	probably null	Het
Pbrm1	T	A	14: 31,084,803	C1062*	probably null	Het
Pcdh15	A	G	10: 74,643,728	E557G	unknown	Het
Pcdh7	T	C	5: 57,721,335	L744P	probably benign	Het
Plekhg3	A	T	12: 76,562,278	I142L	possibly damaging	Het
Plk4	C	T	3: 40,811,891	H695Y	probably damaging	Het
Pms1	T	C	1: 53,208,057	H243R	probably benign	Het
Prdm14	T	C	1: 13,122,483	D344G	possibly damaging	Het
R3hdml	A	G	2: 163,502,332	I214V	probably benign	Het
Rab11fip5	T	C	6: 85,348,710	N238S	probably benign	Het
Sacs	T	A	14: 61,240,319	Y732N	possibly damaging	Het
Scfd1	T	A	12: 51,393,866	M187K	possibly damaging	Het
Serpina1d	A	G	12: 103,767,998	C16R	probably damaging	Het
Slc2a12	T	C	10: 22,665,095	I283T	possibly damaging	Het
Smarca5	A	G	8: 80,719,803	Y423H	probably damaging	Het
Srrm3	C	A	5: 135,868,261	A366E	unknown	Het
St7	A	T	6: 17,844,914	K134*	probably null	Het
St8sia5	T	G	18: 77,254,829	C412G	probably damaging	Het
Tanc2	A	T	11: 105,886,458	I821F	probably damaging	Het
Tbrg4	A	G	11: 6,624,204	M6T	probably benign	Het
Tcf20	A	T	15: 82,852,696	I1518N	probably benign	Het
Tctn3	A	G	19: 40,607,276	V355A	probably benign	Het
Tenm2	A	T	11: 36,024,500	F2070Y	probably damaging	Het
Tex2	A	G	11: 106,568,535	V23A	probably damaging	Het
Thrsp	C	G	7: 97,417,074	E144Q	probably damaging	Het
Top2a	A	C	11: 99,001,078	S1114A	probably benign	Het
Tpm1	A	G	9: 67,029,716	Y267H	probably benign	Het
Txndc2	G	T	17: 65,639,024	P53T	unknown	Het
Ugt2b36	A	T	5: 87,081,017	I389N	probably damaging	Het
Virma	C	T	4: 11,513,507	R454*	probably null	Het
Vwa3b	T	A	1: 37,035,801	H16Q	probably damaging	Het
Zbp1	A	G	2: 173,210,643	M240T	possibly damaging	Het

Other mutations in Fyco1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00578:Fyco1	APN	9	123838897	missense	probably damaging	1.00
IGL01407:Fyco1	APN	9	123828879	missense	probably damaging	1.00
IGL01621:Fyco1	APN	9	123827182	unclassified	probably benign
IGL01908:Fyco1	APN	9	123829230	missense	probably damaging	1.00
IGL02006:Fyco1	APN	9	123829831	nonsense	probably null
IGL02899:Fyco1	APN	9	123830331	missense	possibly damaging	0.47
IGL03166:Fyco1	APN	9	123828387	missense	probably benign	0.00
IGL03272:Fyco1	APN	9	123829603	missense	probably benign	0.00
BB009:Fyco1	UTSW	9	123828990	missense	possibly damaging	0.79
BB019:Fyco1	UTSW	9	123828990	missense	possibly damaging	0.79
PIT4480001:Fyco1	UTSW	9	123828650	nonsense	probably null
R0013:Fyco1	UTSW	9	123822406	missense	probably benign
R0025:Fyco1	UTSW	9	123829009	missense	probably damaging	1.00
R0349:Fyco1	UTSW	9	123797662	missense	probably damaging	0.98
R0751:Fyco1	UTSW	9	123819153	missense	probably damaging	1.00
R1184:Fyco1	UTSW	9	123819153	missense	probably damaging	1.00
R1563:Fyco1	UTSW	9	123827182	unclassified	probably benign
R1618:Fyco1	UTSW	9	123829281	missense	probably damaging	1.00
R1732:Fyco1	UTSW	9	123819092	missense	probably benign	0.32
R1873:Fyco1	UTSW	9	123823238	missense	probably benign
R1920:Fyco1	UTSW	9	123830413	missense	probably damaging	1.00
R2108:Fyco1	UTSW	9	123797516	critical splice donor site	probably null
R2849:Fyco1	UTSW	9	123834826	nonsense	probably null
R2944:Fyco1	UTSW	9	123826648	missense	probably benign	0.02
R4035:Fyco1	UTSW	9	123801283	missense	probably benign	0.00
R4120:Fyco1	UTSW	9	123825626	missense	probably benign	0.00
R4198:Fyco1	UTSW	9	123826634	missense	probably benign
R4534:Fyco1	UTSW	9	123838888	missense	probably damaging	1.00
R4535:Fyco1	UTSW	9	123838888	missense	probably damaging	1.00
R4536:Fyco1	UTSW	9	123838888	missense	probably damaging	1.00
R5408:Fyco1	UTSW	9	123829503	missense	probably damaging	0.99
R5522:Fyco1	UTSW	9	123794771	nonsense	probably null
R5755:Fyco1	UTSW	9	123828708	missense	possibly damaging	0.71
R5781:Fyco1	UTSW	9	123794833	missense	probably damaging	1.00
R5813:Fyco1	UTSW	9	123831348	missense	probably damaging	1.00
R7090:Fyco1	UTSW	9	123797719	missense	probably damaging	0.98
R7205:Fyco1	UTSW	9	123822426	missense	probably benign	0.00
R7932:Fyco1	UTSW	9	123828990	missense	possibly damaging	0.79
R8086:Fyco1	UTSW	9	123830406	missense	probably damaging	1.00
R8103:Fyco1	UTSW	9	123829388	missense	probably benign	0.17
R8504:Fyco1	UTSW	9	123830077	missense	probably benign	0.08
R8530:Fyco1	UTSW	9	123840540	critical splice donor site	probably null
R8822:Fyco1	UTSW	9	123819119	missense	probably damaging	1.00
R8899:Fyco1	UTSW	9	123826581	missense	probably benign	0.00
R8987:Fyco1	UTSW	9	123829074	missense	possibly damaging	0.68
R9227:Fyco1	UTSW	9	123819146	missense	probably damaging	1.00
R9239:Fyco1	UTSW	9	123797572	missense	probably damaging	1.00
R9347:Fyco1	UTSW	9	123831285	critical splice donor site	probably null
Z1177:Fyco1	UTSW	9	123828323	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- CTCAATGCTAGAGAATAGAGGCAAC -3'
(R):5'- TGGAGCAGCTTGACACCAAC -3'

Sequencing Primer
(F):5'- CAACGATGCATAGTCAGGTGG -3'
(R):5'- CTTGACACCAACATAGTCAGGGATG -3'

Posted On

2022-03-25