Mutagenetix > Incidental Mutation

Incidental Mutation 'R9297:Zkscan4'

704688

Institutional Source

Beutler Lab

Gene Symbol

Zkscan4

Ensembl Gene

ENSMUSG00000054931

Gene Name

zinc finger with KRAB and SCAN domains 4

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.060) question?

Stock #

R9297 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

21663019-21669677 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 21668201 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Arginine at position 246 (S246R)

Ref Sequence

ENSEMBL: ENSMUSP00000054604 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000062609] [ENSMUST00000076238] [ENSMUST00000225845]

AlphaFold

Q5SZT6

Predicted Effect

probably benign
Transcript: ENSMUST00000062609
AA Change: S246R

PolyPhen 2 Score 0.064 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000054604
Gene: ENSMUSG00000054931
AA Change: S246R

Domain	Start	End	E-Value	Type
SCAN	47	159	9.33e-69	SMART
ZnF_C2H2	253	275	4.11e-2	SMART
ZnF_C2H2	281	303	1.12e-3	SMART
ZnF_C2H2	309	331	6.52e-5	SMART
ZnF_C2H2	337	359	2.57e-3	SMART
ZnF_C2H2	365	387	1.98e-4	SMART
ZnF_C2H2	420	442	1.98e-4	SMART
ZnF_C2H2	448	470	2.09e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000076238

SMART Domains

Protein: ENSMUSP00000075589
Gene: ENSMUSG00000059459

Domain	Start	End	E-Value	Type
low complexity region	1	15	N/A	INTRINSIC
low complexity region	20	43	N/A	INTRINSIC
low complexity region	58	69	N/A	INTRINSIC
low complexity region	79	94	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000225845
AA Change: S217R

PolyPhen 2 Score 0.174 (Sensitivity: 0.92; Specificity: 0.87)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

99% (73/74)

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts1	T	C	16: 85,599,534 (GRCm39)	Q22R	probably benign	Het
Adamts20	A	G	15: 94,301,321 (GRCm39)	S68P	possibly damaging	Het
Adcy6	A	T	15: 98,491,466 (GRCm39)	N1044K	possibly damaging	Het
Ak9	T	G	10: 41,299,081 (GRCm39)	M1594R	unknown	Het
Alkbh3	A	G	2: 93,835,082 (GRCm39)	S88P	probably damaging	Het
Angpt1	A	G	15: 42,301,751 (GRCm39)	I419T	probably benign	Het
Ankrd31	A	T	13: 97,015,085 (GRCm39)	L1451F	probably benign	Het
Ap1b1	T	C	11: 4,990,157 (GRCm39)	I860T	probably benign	Het
Apcdd1	C	T	18: 63,055,731 (GRCm39)		probably benign	Het
Astn2	T	C	4: 65,460,960 (GRCm39)	D1058G	possibly damaging	Het
Atg3	A	G	16: 44,987,371 (GRCm39)	H48R	possibly damaging	Het
Bnc2	A	C	4: 84,474,136 (GRCm39)		probably benign	Het
Cadps2	A	G	6: 23,496,887 (GRCm39)	Y453H	probably benign	Het
Catsperg1	T	C	7: 28,891,085 (GRCm39)	T653A	probably benign	Het
Ccdc102a	A	G	8: 95,638,120 (GRCm39)	S249P	possibly damaging	Het
Ccdc125	A	G	13: 100,832,920 (GRCm39)	Y499C	probably damaging	Het
Ccdc141	A	G	2: 76,842,028 (GRCm39)	F1468L	probably benign	Het
Ccdc162	C	A	10: 41,506,110 (GRCm39)	M893I	probably benign	Het
Ccdc33	C	A	9: 57,993,876 (GRCm39)	W335L	possibly damaging	Het
Chn2	T	A	6: 54,272,840 (GRCm39)	Y355N	probably damaging	Het
Clec4g	A	G	8: 3,766,500 (GRCm39)	M267T	probably damaging	Het
Cpa6	A	T	1: 10,554,273 (GRCm39)	D111E	possibly damaging	Het
Crlf3	A	G	11: 79,950,031 (GRCm39)	C200R	probably damaging	Het
Cyp4a10	T	C	4: 115,378,375 (GRCm39)	S164P	probably damaging	Het
Def6	A	G	17: 28,436,714 (GRCm39)	N126S	probably damaging	Het
Diaph1	G	A	18: 38,022,828 (GRCm39)	T782I	probably benign	Het
Dnah5	A	C	15: 28,204,054 (GRCm39)		probably benign	Het
Eme1	A	T	11: 94,541,614 (GRCm39)	S69R	probably benign	Het
Fat3	A	T	9: 15,908,996 (GRCm39)	D2335E	probably damaging	Het
Fstl4	A	G	11: 53,024,973 (GRCm39)	K282E	possibly damaging	Het
Galnt7	T	C	8: 57,995,555 (GRCm39)	E380G	probably damaging	Het
Gm973	A	T	1: 59,583,829 (GRCm39)	Y204F	probably damaging	Het
Hace1	T	A	10: 45,528,769 (GRCm39)	S337T	probably benign	Het
Ipo8	C	A	6: 148,703,076 (GRCm39)	C416F	possibly damaging	Het
Kcnt2	T	C	1: 140,352,933 (GRCm39)	I214T	probably damaging	Het
Kdelr3	C	A	15: 79,411,275 (GRCm39)	L203I	probably benign	Het
Kif26b	C	T	1: 178,543,374 (GRCm39)	Q336*	probably null	Het
Krt36	A	G	11: 99,994,271 (GRCm39)	Y269H	probably damaging	Het
Lamc1	G	T	1: 153,127,746 (GRCm39)	R386S	probably damaging	Het
Lipc	T	A	9: 70,727,736 (GRCm39)	D122V	probably damaging	Het
Lrba	A	G	3: 86,280,873 (GRCm39)	T1841A	probably damaging	Het
Lrit1	T	A	14: 36,783,993 (GRCm39)	D440E	probably damaging	Het
Map4	T	C	9: 109,882,480 (GRCm39)	I448T	probably benign	Het
Megf8	G	T	7: 25,030,511 (GRCm39)	C488F	probably damaging	Het
Mllt6	A	G	11: 97,563,314 (GRCm39)	E299G	probably damaging	Het
Mpst	G	T	15: 78,294,642 (GRCm39)	V125L	probably damaging	Het
Msx1	G	A	5: 37,981,756 (GRCm39)		probably benign	Het
Muc2	A	G	7: 141,302,759 (GRCm39)	E473G		Het
Myo15a	A	G	11: 60,385,899 (GRCm39)	R602G	probably null	Het
Myod1	A	T	7: 46,026,356 (GRCm39)	H87L	probably damaging	Het
Nid1	T	C	13: 13,650,897 (GRCm39)	V478A	possibly damaging	Het
Obscn	A	T	11: 58,898,359 (GRCm39)	I6634N	unknown	Het
Or52ab7	T	A	7: 102,978,583 (GRCm39)	Y297N	probably damaging	Het
Or52e7	T	C	7: 104,684,830 (GRCm39)	Y142H	probably damaging	Het
Or8k22	A	G	2: 86,163,188 (GRCm39)	Y171H	probably benign	Het
Pdgfrl	C	T	8: 41,391,268 (GRCm39)	S66F	probably damaging	Het
Phf20	G	A	2: 156,115,690 (GRCm39)	R337H	probably benign	Het
Pkhd1	T	A	1: 20,293,118 (GRCm39)	Y2834F	probably benign	Het
Plekhg4	A	C	8: 106,105,907 (GRCm39)	E768A	probably damaging	Het
Prss37	A	T	6: 40,491,909 (GRCm39)	Y224N	probably damaging	Het
Ptprs	A	T	17: 56,765,257 (GRCm39)	V9E	probably damaging	Het
Ptprt	A	G	2: 161,417,698 (GRCm39)	L926S	probably benign	Het
Rgl1	G	A	1: 152,400,454 (GRCm39)	T649I	possibly damaging	Het
Serpinf1	A	G	11: 75,307,251 (GRCm39)	S29P	probably damaging	Het
Skint6	A	T	4: 112,668,717 (GRCm39)	D1119E	probably benign	Het
Snw1	T	C	12: 87,505,674 (GRCm39)	K255E	probably damaging	Het
Sox6	T	C	7: 115,261,557 (GRCm39)	I220V	probably benign	Het
Stimate	T	A	14: 30,588,639 (GRCm39)	V122E	probably damaging	Het
Tas2r114	A	G	6: 131,666,287 (GRCm39)	I247T	probably damaging	Het
Tmem145	C	T	7: 25,008,257 (GRCm39)	T280M	probably damaging	Het
Usp48	G	A	4: 137,340,996 (GRCm39)	G332E	probably benign	Het
Zfp219	T	C	14: 52,246,494 (GRCm39)	H211R	probably damaging	Het
Zfp42	T	C	8: 43,748,772 (GRCm39)	N243S	possibly damaging	Het

Other mutations in Zkscan4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01353:Zkscan4	APN	13	21,668,518 (GRCm39)	missense	probably damaging	1.00
IGL01358:Zkscan4	APN	13	21,668,475 (GRCm39)	missense	possibly damaging	0.82
R0107:Zkscan4	UTSW	13	21,668,751 (GRCm39)	missense	possibly damaging	0.62
R0637:Zkscan4	UTSW	13	21,665,477 (GRCm39)	missense	probably damaging	0.99
R0791:Zkscan4	UTSW	13	21,668,081 (GRCm39)	missense	probably benign	0.04
R1252:Zkscan4	UTSW	13	21,668,044 (GRCm39)	missense	probably benign	0.02
R1870:Zkscan4	UTSW	13	21,668,104 (GRCm39)	missense	probably benign	0.00
R4771:Zkscan4	UTSW	13	21,663,416 (GRCm39)	nonsense	probably null
R5080:Zkscan4	UTSW	13	21,665,498 (GRCm39)	missense	probably benign	0.02
R5987:Zkscan4	UTSW	13	21,668,623 (GRCm39)	missense	probably damaging	1.00
R6238:Zkscan4	UTSW	13	21,668,757 (GRCm39)	missense	possibly damaging	0.53
R6542:Zkscan4	UTSW	13	21,668,508 (GRCm39)	missense	probably damaging	1.00
R6954:Zkscan4	UTSW	13	21,668,535 (GRCm39)	missense	probably damaging	1.00
R7227:Zkscan4	UTSW	13	21,668,413 (GRCm39)	missense	probably benign	0.00
R7418:Zkscan4	UTSW	13	21,668,799 (GRCm39)	missense	probably damaging	1.00
R7462:Zkscan4	UTSW	13	21,668,044 (GRCm39)	missense	probably benign	0.02
R7549:Zkscan4	UTSW	13	21,668,419 (GRCm39)	missense	probably damaging	1.00
R7750:Zkscan4	UTSW	13	21,663,525 (GRCm39)	missense	probably damaging	1.00
R8051:Zkscan4	UTSW	13	21,668,823 (GRCm39)	missense	not run
R8942:Zkscan4	UTSW	13	21,668,680 (GRCm39)	missense	probably benign	0.00
R9040:Zkscan4	UTSW	13	21,668,229 (GRCm39)	missense	probably benign
R9304:Zkscan4	UTSW	13	21,665,570 (GRCm39)	missense	possibly damaging	0.75
RF049:Zkscan4	UTSW	13	21,668,881 (GRCm39)	frame shift	probably null
T0722:Zkscan4	UTSW	13	21,663,370 (GRCm39)	small deletion	probably benign
T0975:Zkscan4	UTSW	13	21,663,370 (GRCm39)	small deletion	probably benign
Z1088:Zkscan4	UTSW	13	21,668,067 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTCAGGGCTGGAAATGAAGC -3'
(R):5'- TGATGTTCAAGGAGGCTGC -3'

Sequencing Primer
(F):5'- CTGGAAATGAAGCCTGAGACC -3'
(R):5'- GAGTGAAGGTTTTCCCACAGTCATC -3'

Posted On

2022-03-25